RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 CAMK2N1Q7Z7J9 78 aa6.25□□□□□ -1.41
VIM-204ENST00000478746 UQCR11O14957 56 aa6.23□□□□□ -1.41
VIM-204ENST00000478746 PP632Q6XCG6 107 aa6.23□□□□□ -1.41
VIM-204ENST00000478746 KRTAP5-7Q6L8G8 165 aa6.21□□□□□ -1.42
VIM-204ENST00000478746 KRTAP4-6Q9BYQ5 205 aa6.2□□□□□ -1.42
VIM-204ENST00000478746 A8MU10 97 aa6.18□□□□□ -1.42
VIM-204ENST00000478746 KRTAP5-4Q6L8H1 288 aa6.18□□□□□ -1.42
VIM-204ENST00000478746 SPINT4Q6UDR6 99 aa6.17□□□□□ -1.42
VIM-204ENST00000478746 MT1MQ8N339 61 aa6.15□□□□□ -1.42
VIM-204ENST00000478746 KRTAP19-5Q3LI72 72 aa6.14□□□□□ -1.43
VIM-204ENST00000478746 KRTAP12-1P59990 96 aa6.13□□□□□ -1.43
VIM-204ENST00000478746 MIR22HGQ0VDD5 57 aa6.13□□□□□ -1.43
VIM-204ENST00000478746 KRTAP5-3Q6L8H2 238 aa6.11□□□□□ -1.43
VIM-204ENST00000478746 A6NED7 52 aa6.09□□□□□ -1.43
VIM-204ENST00000478746 MT1LQ93083 61 aa6.04□□□□□ -1.44
VIM-204ENST00000478746 KRTAP4-3Q9BYR4 195 aa6.04□□□□□ -1.44
VIM-204ENST00000478746 SPRR5A0A1B0GTR4 108 aa6.01□□□□□ -1.45
VIM-204ENST00000478746 K7ERS5 55 aa5.97□□□□□ -1.45
VIM-204ENST00000478746 CDC42SE1Q9NRR8 79 aa5.89□□□□□ -1.47
VIM-204ENST00000478746 KRTAP20-2Q3LI61 65 aa5.88□□□□□ -1.47
VIM-204ENST00000478746 C10orf95Q9H7T3 257 aa5.82□□□□□ -1.48
VIM-204ENST00000478746 TNP1P09430 55 aa5.76□□□□□ -1.49
VIM-204ENST00000478746 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
VIM-204ENST00000478746 KRTAP4-7Q9BYR0 210 aa5.73□□□□□ -1.49
VIM-204ENST00000478746 KRTAP12-4P60329 112 aa5.72□□□□□ -1.49
VIM-204ENST00000478746 BRK1Q8WUW1 75 aa5.72□□□□□ -1.49
VIM-204ENST00000478746 KRTAP5-5Q701N2 237 aaPredicted RBP5.67□□□□□ -1.5
VIM-204ENST00000478746 KRTAP25-1Q3LHN0 102 aa5.64□□□□□ -1.51
VIM-204ENST00000478746 ROMO1P60602 79 aa5.62□□□□□ -1.51
VIM-204ENST00000478746 SYNE1Q8NF91 8797 aaKnown RBP5.58□□□□□ -1.52
VIM-204ENST00000478746 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
VIM-204ENST00000478746 KRTAP4-11Q9BYQ6 195 aa5.52□□□□□ -1.53
VIM-204ENST00000478746 AHNAKQ09666 5890 aaKnown RBP5.48□□□□□ -1.53
VIM-204ENST00000478746 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
VIM-204ENST00000478746 MUC5ACP98088 5654 aa5.43□□□□□ -1.54
VIM-204ENST00000478746 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
VIM-204ENST00000478746 PMAIP1Q13794 54 aa5.39□□□□□ -1.55
VIM-204ENST00000478746 PRO0628Q9UI54 55 aa5.38□□□□□ -1.55
VIM-204ENST00000478746 MUC5BQ9HC84 5762 aaPredicted RBP5.38□□□□□ -1.55
VIM-204ENST00000478746 KRTAP5-8O75690 187 aa5.34□□□□□ -1.55
VIM-204ENST00000478746 KRTAP5-2Q701N4 177 aa5.3□□□□□ -1.56
VIM-204ENST00000478746 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
VIM-204ENST00000478746 SVIPQ8NHG7 77 aa5.19□□□□□ -1.58
VIM-204ENST00000478746 KRTAP9-9Q9BYP9 154 aa5.19□□□□□ -1.58
VIM-204ENST00000478746 KRTAP19-4Q3LI73 84 aa5.18□□□□□ -1.58
VIM-204ENST00000478746 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
VIM-204ENST00000478746 KRTAP6-1Q3LI64 71 aa5.14□□□□□ -1.59
VIM-204ENST00000478746 MT1AP04731 61 aa5.12□□□□□ -1.59
VIM-204ENST00000478746 PRAC1Q96KF2 57 aa5.08□□□□□ -1.6
VIM-204ENST00000478746 KRTAP9-4Q9BYQ2 154 aa5.04□□□□□ -1.6
VIM-204ENST00000478746 KRTAP6-2Q3LI66 62 aa5.03□□□□□ -1.6
VIM-204ENST00000478746 LCE3CQ5T5A8 94 aa5.03□□□□□ -1.6
VIM-204ENST00000478746 KTN1-AS1Q86SY8 53 aa5.03□□□□□ -1.6
VIM-204ENST00000478746 KRTAP5-1Q6L8H4 278 aa4.88□□□□□ -1.63
VIM-204ENST00000478746 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
VIM-204ENST00000478746 MT3P25713 68 aa4.74□□□□□ -1.65
VIM-204ENST00000478746 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
VIM-204ENST00000478746 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
VIM-204ENST00000478746 KRTAP4-2Q9BYR5 136 aa4.27□□□□□ -1.73
VIM-204ENST00000478746 LUZP6Q538Z0 58 aa4.25□□□□□ -1.73
VIM-204ENST00000478746 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
VIM-204ENST00000478746 KRTAP4-12Q9BQ66 201 aa4.11□□□□□ -1.75
VIM-204ENST00000478746 KRTAP5-11Q6L8G4 156 aa3.87□□□□□ -1.79
VIM-204ENST00000478746 NDUFAF8A1L188 74 aa3.84□□□□□ -1.79
VIM-204ENST00000478746 LCE1FQ5T754 118 aa3.84□□□□□ -1.79
VIM-204ENST00000478746 H3BS24 57 aa3.83□□□□□ -1.8
VIM-204ENST00000478746 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
VIM-204ENST00000478746 A0A0A0MQY5 61 aa3.73□□□□□ -1.81
VIM-204ENST00000478746 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
VIM-204ENST00000478746 LCE3DQ9BYE3 92 aa3.68□□□□□ -1.82
VIM-204ENST00000478746 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
VIM-204ENST00000478746 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
VIM-204ENST00000478746 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
VIM-204ENST00000478746 INE1O15225 51 aa3.24□□□□□ -1.89
VIM-204ENST00000478746 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
VIM-204ENST00000478746 PRM1P04553 51 aa2.89□□□□□ -1.95
VIM-204ENST00000478746 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
VIM-204ENST00000478746 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 88.6 ms