RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 SPRR5A0A1B0GTR4 108 aa5.07□□□□□ -1.6
HLA-DOB-208ENST00000475235 KRTAP6-3Q3LI67 103 aa5.05□□□□□ -1.6
HLA-DOB-208ENST00000475235 KRTAP10-5P60370 271 aa5.02□□□□□ -1.61
HLA-DOB-208ENST00000475235 KRTAP12-1P59990 96 aa4.89□□□□□ -1.63
HLA-DOB-208ENST00000475235 A0A0D9SG42 100 aa4.88□□□□□ -1.63
HLA-DOB-208ENST00000475235 NEBP20929 6669 aa4.88□□□□□ -1.63
HLA-DOB-208ENST00000475235 KRTAP13-4Q3LI77 160 aa4.87□□□□□ -1.63
HLA-DOB-208ENST00000475235 M0QZ58 72 aa4.87□□□□□ -1.63
HLA-DOB-208ENST00000475235 MUC12Q9UKN1 5478 aa4.87□□□□□ -1.63
HLA-DOB-208ENST00000475235 KRTAP5-9P26371 169 aa4.82□□□□□ -1.64
HLA-DOB-208ENST00000475235 LCE1AQ5T7P2 110 aa4.82□□□□□ -1.64
HLA-DOB-208ENST00000475235 MT1XP80297 61 aa4.81□□□□□ -1.64
HLA-DOB-208ENST00000475235 KMT2DO14686 5537 aa4.77□□□□□ -1.65
HLA-DOB-208ENST00000475235 MDN1Q9NU22 5596 aa4.75□□□□□ -1.65
HLA-DOB-208ENST00000475235 KRTAP8-1Q8IUC2 63 aa4.68□□□□□ -1.66
HLA-DOB-208ENST00000475235 SPRR2FQ96RM1 72 aa4.68□□□□□ -1.66
HLA-DOB-208ENST00000475235 KRTAP20-1Q3LI63 56 aa4.67□□□□□ -1.66
HLA-DOB-208ENST00000475235 SPRR2EP22531 72 aa4.61□□□□□ -1.67
HLA-DOB-208ENST00000475235 SPRR2BP35325 72 aa4.61□□□□□ -1.67
HLA-DOB-208ENST00000475235 SPRR2AP35326 72 aa4.61□□□□□ -1.67
HLA-DOB-208ENST00000475235 KRTAP10-7P60409 375 aaPredicted RBP4.58□□□□□ -1.68
HLA-DOB-208ENST00000475235 KRTAP10-12P60413 245 aa4.58□□□□□ -1.68
HLA-DOB-208ENST00000475235 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
HLA-DOB-208ENST00000475235 KRTAP2-4Q9BYR9 128 aa4.56□□□□□ -1.68
HLA-DOB-208ENST00000475235 KRTAP2-2Q9BYT5 123 aa4.47□□□□□ -1.69
HLA-DOB-208ENST00000475235 SPRR2DP22532 72 aa4.46□□□□□ -1.7
HLA-DOB-208ENST00000475235 KRTAP2-1Q9BYU5 128 aa4.41□□□□□ -1.7
HLA-DOB-208ENST00000475235 MT3P25713 68 aa4.33□□□□□ -1.72
HLA-DOB-208ENST00000475235 KRTAP19-7Q3SYF9 63 aa4.3□□□□□ -1.72
HLA-DOB-208ENST00000475235 MT1EP04732 61 aa4.27□□□□□ -1.73
HLA-DOB-208ENST00000475235 TNP1P09430 55 aa4.26□□□□□ -1.73
HLA-DOB-208ENST00000475235 KRTAP19-3Q7Z4W3 81 aa4.25□□□□□ -1.73
HLA-DOB-208ENST00000475235 KRTAP19-5Q3LI72 72 aa4.2□□□□□ -1.74
HLA-DOB-208ENST00000475235 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
HLA-DOB-208ENST00000475235 GPR98Q8WXG9 6306 aa4.16□□□□□ -1.74
HLA-DOB-208ENST00000475235 MT1GP13640 62 aa4.16□□□□□ -1.74
HLA-DOB-208ENST00000475235 LCE3AQ5TA76 89 aa4.11□□□□□ -1.75
HLA-DOB-208ENST00000475235 MT1LQ93083 61 aa4.08□□□□□ -1.76
HLA-DOB-208ENST00000475235 MT1MQ8N339 61 aa4.06□□□□□ -1.76
HLA-DOB-208ENST00000475235 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
HLA-DOB-208ENST00000475235 KRTAP5-11Q6L8G4 156 aa4.03□□□□□ -1.76
HLA-DOB-208ENST00000475235 KRTAP12-3P60328 96 aa3.98□□□□□ -1.77
HLA-DOB-208ENST00000475235 KRTAP4-3Q9BYR4 195 aa3.93□□□□□ -1.78
HLA-DOB-208ENST00000475235 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
HLA-DOB-208ENST00000475235 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.78
HLA-DOB-208ENST00000475235 MT4P47944 62 aa3.88□□□□□ -1.79
HLA-DOB-208ENST00000475235 HMCN1Q96RW7 5635 aa3.88□□□□□ -1.79
HLA-DOB-208ENST00000475235 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
HLA-DOB-208ENST00000475235 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
HLA-DOB-208ENST00000475235 KRTAP5-5Q701N2 237 aaPredicted RBP3.73□□□□□ -1.81
HLA-DOB-208ENST00000475235 AHNAK2Q8IVF2 5795 aa3.7□□□□□ -1.82
HLA-DOB-208ENST00000475235 KRTAP20-2Q3LI61 65 aa3.65□□□□□ -1.82
HLA-DOB-208ENST00000475235 LCE3CQ5T5A8 94 aa3.65□□□□□ -1.82
HLA-DOB-208ENST00000475235 KRTAP5-10Q6L8G5 202 aa3.64□□□□□ -1.83
HLA-DOB-208ENST00000475235 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
HLA-DOB-208ENST00000475235 SYNE1Q8NF91 8797 aaKnown RBP3.59□□□□□ -1.83
HLA-DOB-208ENST00000475235 KRTAP5-7Q6L8G8 165 aa3.5□□□□□ -1.85
HLA-DOB-208ENST00000475235 MT1AP04731 61 aa3.49□□□□□ -1.85
HLA-DOB-208ENST00000475235 KRTAP6-1Q3LI64 71 aa3.44□□□□□ -1.86
HLA-DOB-208ENST00000475235 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.86
HLA-DOB-208ENST00000475235 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
HLA-DOB-208ENST00000475235 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
HLA-DOB-208ENST00000475235 KRTAP6-2Q3LI66 62 aa3.29□□□□□ -1.88
HLA-DOB-208ENST00000475235 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
HLA-DOB-208ENST00000475235 KRTAP5-8O75690 187 aa3.21□□□□□ -1.9
HLA-DOB-208ENST00000475235 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
HLA-DOB-208ENST00000475235 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
HLA-DOB-208ENST00000475235 PRM1P04553 51 aa3.1□□□□□ -1.91
HLA-DOB-208ENST00000475235 MUC5BQ9HC84 5762 aaPredicted RBP3.06□□□□□ -1.92
HLA-DOB-208ENST00000475235 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
HLA-DOB-208ENST00000475235 LCE3DQ9BYE3 92 aa2.88□□□□□ -1.95
HLA-DOB-208ENST00000475235 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
HLA-DOB-208ENST00000475235 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
HLA-DOB-208ENST00000475235 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
HLA-DOB-208ENST00000475235 KRTAP21-2Q3LI59 83 aa2.27□□□□□ -2.05
HLA-DOB-208ENST00000475235 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
HLA-DOB-208ENST00000475235 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
HLA-DOB-208ENST00000475235 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 66.9 ms