RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 SPRR2AP35326 72 aa6.56□□□□□ -1.36
SCAF11-206ENST00000474828 PSPHP1O15172 72 aa6.49□□□□□ -1.37
SCAF11-206ENST00000474828 MIR22HGQ0VDD5 57 aa6.49□□□□□ -1.37
SCAF11-206ENST00000474828 C10orf95Q9H7T3 257 aa6.47□□□□□ -1.37
SCAF11-206ENST00000474828 LCE1AQ5T7P2 110 aa6.46□□□□□ -1.38
SCAF11-206ENST00000474828 KRTAP15-1Q3LI76 137 aa6.44□□□□□ -1.38
SCAF11-206ENST00000474828 KRTAP2-2Q9BYT5 123 aa6.41□□□□□ -1.38
SCAF11-206ENST00000474828 KRTAP2-1Q9BYU5 128 aa6.41□□□□□ -1.38
SCAF11-206ENST00000474828 KRTAP19-7Q3SYF9 63 aa6.39□□□□□ -1.39
SCAF11-206ENST00000474828 TNP1P09430 55 aa6.35□□□□□ -1.39
SCAF11-206ENST00000474828 SPRR2DP22532 72 aa6.35□□□□□ -1.39
SCAF11-206ENST00000474828 MT1EP04732 61 aa6.3□□□□□ -1.4
SCAF11-206ENST00000474828 A6NED7 52 aa6.29□□□□□ -1.4
SCAF11-206ENST00000474828 K7ERS5 55 aa6.27□□□□□ -1.41
SCAF11-206ENST00000474828 KRTAP19-5Q3LI72 72 aa6.23□□□□□ -1.41
SCAF11-206ENST00000474828 LCE3AQ5TA76 89 aa6.23□□□□□ -1.41
SCAF11-206ENST00000474828 KRTAP25-1Q3LHN0 102 aa6.19□□□□□ -1.42
SCAF11-206ENST00000474828 KRTAP5-3Q6L8H2 238 aa6.19□□□□□ -1.42
SCAF11-206ENST00000474828 KRTAP19-3Q7Z4W3 81 aa6.17□□□□□ -1.42
SCAF11-206ENST00000474828 CDC42SE1Q9NRR8 79 aa6.14□□□□□ -1.43
SCAF11-206ENST00000474828 MT1GP13640 62 aa6.08□□□□□ -1.44
SCAF11-206ENST00000474828 MT1LQ93083 61 aa6.06□□□□□ -1.44
SCAF11-206ENST00000474828 KRTAP12-3P60328 96 aa6.01□□□□□ -1.45
SCAF11-206ENST00000474828 PP632Q6XCG6 107 aa5.97□□□□□ -1.45
SCAF11-206ENST00000474828 ROMO1P60602 79 aa5.96□□□□□ -1.46
SCAF11-206ENST00000474828 MT1MQ8N339 61 aa5.96□□□□□ -1.46
SCAF11-206ENST00000474828 GPR98Q8WXG9 6306 aa5.89□□□□□ -1.47
SCAF11-206ENST00000474828 DSTQ03001 7570 aaKnown RBP5.87□□□□□ -1.47
SCAF11-206ENST00000474828 KRTAP4-3Q9BYR4 195 aa5.76□□□□□ -1.49
SCAF11-206ENST00000474828 BRK1Q8WUW1 75 aa5.7□□□□□ -1.5
SCAF11-206ENST00000474828 KRTAP5-4Q6L8H1 288 aa5.59□□□□□ -1.51
SCAF11-206ENST00000474828 MT4P47944 62 aa5.58□□□□□ -1.52
SCAF11-206ENST00000474828 LCE3CQ5T5A8 94 aa5.58□□□□□ -1.52
SCAF11-206ENST00000474828 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
SCAF11-206ENST00000474828 HMCN1Q96RW7 5635 aa5.51□□□□□ -1.53
SCAF11-206ENST00000474828 AHNAK2Q8IVF2 5795 aa5.44□□□□□ -1.54
SCAF11-206ENST00000474828 PMAIP1Q13794 54 aa5.39□□□□□ -1.55
SCAF11-206ENST00000474828 KRTAP5-10Q6L8G5 202 aa5.38□□□□□ -1.55
SCAF11-206ENST00000474828 KRTAP9-6A8MVA2 160 aa5.29□□□□□ -1.56
SCAF11-206ENST00000474828 PRO0628Q9UI54 55 aa5.29□□□□□ -1.56
SCAF11-206ENST00000474828 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
SCAF11-206ENST00000474828 KRTAP5-7Q6L8G8 165 aa5.21□□□□□ -1.58
SCAF11-206ENST00000474828 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
SCAF11-206ENST00000474828 KRTAP20-2Q3LI61 65 aa5.19□□□□□ -1.58
SCAF11-206ENST00000474828 MT1AP04731 61 aa5.17□□□□□ -1.58
SCAF11-206ENST00000474828 SYNE1Q8NF91 8797 aaKnown RBP5.14□□□□□ -1.59
SCAF11-206ENST00000474828 SVIPQ8NHG7 77 aa5.13□□□□□ -1.59
SCAF11-206ENST00000474828 PRAC1Q96KF2 57 aa5.11□□□□□ -1.59
SCAF11-206ENST00000474828 KRTAP6-1Q3LI64 71 aa5.1□□□□□ -1.59
SCAF11-206ENST00000474828 A0A0A0MQY5 61 aa5.01□□□□□ -1.61
SCAF11-206ENST00000474828 KTN1-AS1Q86SY8 53 aa4.98□□□□□ -1.61
SCAF11-206ENST00000474828 KRTAP5-2Q701N4 177 aa4.97□□□□□ -1.61
SCAF11-206ENST00000474828 MT3P25713 68 aa4.95□□□□□ -1.62
SCAF11-206ENST00000474828 KRTAP5-11Q6L8G4 156 aa4.83□□□□□ -1.64
SCAF11-206ENST00000474828 KRTAP6-2Q3LI66 62 aa4.8□□□□□ -1.64
SCAF11-206ENST00000474828 LCE1EQ5T753 118 aa4.79□□□□□ -1.64
SCAF11-206ENST00000474828 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.74□□□□□ -1.65
SCAF11-206ENST00000474828 KRTAP5-8O75690 187 aa4.6□□□□□ -1.67
SCAF11-206ENST00000474828 AHNAKQ09666 5890 aaKnown RBP4.53□□□□□ -1.68
SCAF11-206ENST00000474828 MUC5ACP98088 5654 aa4.53□□□□□ -1.68
SCAF11-206ENST00000474828 LCE1FQ5T754 118 aa4.49□□□□□ -1.69
SCAF11-206ENST00000474828 MUC5BQ9HC84 5762 aaPredicted RBP4.48□□□□□ -1.69
SCAF11-206ENST00000474828 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
SCAF11-206ENST00000474828 KRTAP5-1Q6L8H4 278 aa4.37□□□□□ -1.71
SCAF11-206ENST00000474828 LUZP6Q538Z0 58 aa4.25□□□□□ -1.73
SCAF11-206ENST00000474828 NDUFAF8A1L188 74 aa4.13□□□□□ -1.75
SCAF11-206ENST00000474828 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
SCAF11-206ENST00000474828 LCE1CQ5T751 118 aa4□□□□□ -1.77
SCAF11-206ENST00000474828 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
SCAF11-206ENST00000474828 KRTAP4-4Q9BYR3 166 aa3.93□□□□□ -1.78
SCAF11-206ENST00000474828 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
SCAF11-206ENST00000474828 KRTAP21-2Q3LI59 83 aa3.4□□□□□ -1.87
SCAF11-206ENST00000474828 PHGR1C9JFL3 82 aa3.17□□□□□ -1.9
SCAF11-206ENST00000474828 INE1O15225 51 aa3.06□□□□□ -1.92
SCAF11-206ENST00000474828 PRM1P04553 51 aa3.04□□□□□ -1.92
SCAF11-206ENST00000474828 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
SCAF11-206ENST00000474828 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
SCAF11-206ENST00000474828 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms