RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 A6NED7 52 aa2.75□□□□□ -1.97
LIMD1-204ENST00000474665 CDC42SE1Q9NRR8 79 aa2.75□□□□□ -1.97
LIMD1-204ENST00000474665 LCE1DQ5T752 114 aa2.73□□□□□ -1.97
LIMD1-204ENST00000474665 MIR22HGQ0VDD5 57 aa2.72□□□□□ -1.97
LIMD1-204ENST00000474665 C10orf95Q9H7T3 257 aa2.72□□□□□ -1.97
LIMD1-204ENST00000474665 PRO0628Q9UI54 55 aa2.72□□□□□ -1.97
LIMD1-204ENST00000474665 BRK1Q8WUW1 75 aa2.69□□□□□ -1.98
LIMD1-204ENST00000474665 K7ERS5 55 aa2.68□□□□□ -1.98
LIMD1-204ENST00000474665 MT4P47944 62 aa2.65□□□□□ -1.99
LIMD1-204ENST00000474665 KRTAP19-7Q3SYF9 63 aa2.64□□□□□ -1.99
LIMD1-204ENST00000474665 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
LIMD1-204ENST00000474665 TNP1P09430 55 aa2.6□□□□□ -1.99
LIMD1-204ENST00000474665 LCE3AQ5TA76 89 aa2.6□□□□□ -1.99
LIMD1-204ENST00000474665 MT1EP04732 61 aa2.59□□□□□ -1.99
LIMD1-204ENST00000474665 KRTAP19-5Q3LI72 72 aa2.59□□□□□ -1.99
LIMD1-204ENST00000474665 PMAIP1Q13794 54 aa2.57□□□□□ -2
LIMD1-204ENST00000474665 KRTAP25-1Q3LHN0 102 aa2.54□□□□□ -2
LIMD1-204ENST00000474665 LCE4AQ5TA78 99 aa2.54□□□□□ -2
LIMD1-204ENST00000474665 LCE5AQ5TCM9 118 aa2.53□□□□□ -2
LIMD1-204ENST00000474665 KRTAP4-6Q9BYQ5 205 aa2.53□□□□□ -2
LIMD1-204ENST00000474665 KRTAP19-3Q7Z4W3 81 aa2.52□□□□□ -2.01
LIMD1-204ENST00000474665 KTN1-AS1Q86SY8 53 aa2.51□□□□□ -2.01
LIMD1-204ENST00000474665 MT1LQ93083 61 aa2.51□□□□□ -2.01
LIMD1-204ENST00000474665 ROMO1P60602 79 aa2.5□□□□□ -2.01
LIMD1-204ENST00000474665 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
LIMD1-204ENST00000474665 KRTAP12-3P60328 96 aa2.49□□□□□ -2.01
LIMD1-204ENST00000474665 MT1GP13640 62 aa2.47□□□□□ -2.01
LIMD1-204ENST00000474665 KRTAP23-1A1A580 65 aa2.46□□□□□ -2.02
LIMD1-204ENST00000474665 MT1MQ8N339 61 aa2.45□□□□□ -2.02
LIMD1-204ENST00000474665 PP632Q6XCG6 107 aa2.42□□□□□ -2.02
LIMD1-204ENST00000474665 KRTAP4-7Q9BYR0 210 aa2.42□□□□□ -2.02
LIMD1-204ENST00000474665 KRTAP4-3Q9BYR4 195 aa2.42□□□□□ -2.02
LIMD1-204ENST00000474665 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
LIMD1-204ENST00000474665 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
LIMD1-204ENST00000474665 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
LIMD1-204ENST00000474665 KRTAP15-1Q3LI76 137 aa2.37□□□□□ -2.03
LIMD1-204ENST00000474665 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
LIMD1-204ENST00000474665 KRTAP19-4Q3LI73 84 aa2.31□□□□□ -2.04
LIMD1-204ENST00000474665 LCE3CQ5T5A8 94 aa2.31□□□□□ -2.04
LIMD1-204ENST00000474665 PRAC1Q96KF2 57 aa2.31□□□□□ -2.04
LIMD1-204ENST00000474665 LOC100996750A0A140TA64 210 aa2.28□□□□□ -2.04
LIMD1-204ENST00000474665 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
LIMD1-204ENST00000474665 KRTAP5-5Q701N2 237 aaPredicted RBP2.26□□□□□ -2.05
LIMD1-204ENST00000474665 KRTAP9-6A8MVA2 160 aa2.25□□□□□ -2.05
LIMD1-204ENST00000474665 KRTAP4-11Q9BYQ6 195 aa2.25□□□□□ -2.05
LIMD1-204ENST00000474665 SYNE1Q8NF91 8797 aaKnown RBP2.17□□□□□ -2.06
LIMD1-204ENST00000474665 KRTAP9-9Q9BYP9 154 aa2.17□□□□□ -2.06
LIMD1-204ENST00000474665 H3BS24 57 aa2.16□□□□□ -2.06
LIMD1-204ENST00000474665 KRTAP12-4P60329 112 aa2.13□□□□□ -2.07
LIMD1-204ENST00000474665 KRTAP6-1Q3LI64 71 aa2.13□□□□□ -2.07
LIMD1-204ENST00000474665 MT1AP04731 61 aa2.12□□□□□ -2.07
LIMD1-204ENST00000474665 KRTAP5-2Q701N4 177 aa2.1□□□□□ -2.07
LIMD1-204ENST00000474665 LUZP6Q538Z0 58 aa2.04□□□□□ -2.08
LIMD1-204ENST00000474665 A0A0A0MQY5 61 aa2.03□□□□□ -2.08
LIMD1-204ENST00000474665 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
LIMD1-204ENST00000474665 KRTAP6-2Q3LI66 62 aa1.98□□□□□ -2.09
LIMD1-204ENST00000474665 OBSCNQ5VST9 7968 aa1.96□□□□□ -2.1
LIMD1-204ENST00000474665 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
LIMD1-204ENST00000474665 MT3P25713 68 aa1.9□□□□□ -2.11
LIMD1-204ENST00000474665 NDUFAF8A1L188 74 aa1.87□□□□□ -2.11
LIMD1-204ENST00000474665 KRTAP4-2Q9BYR5 136 aa1.77□□□□□ -2.13
LIMD1-204ENST00000474665 LCE1EQ5T753 118 aa1.73□□□□□ -2.13
LIMD1-204ENST00000474665 KRTAP4-12Q9BQ66 201 aa1.71□□□□□ -2.14
LIMD1-204ENST00000474665 INE1O15225 51 aa1.68□□□□□ -2.14
LIMD1-204ENST00000474665 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
LIMD1-204ENST00000474665 PHGR1C9JFL3 82 aa1.67□□□□□ -2.14
LIMD1-204ENST00000474665 LCE1BQ5T7P3 118 aa1.62□□□□□ -2.15
LIMD1-204ENST00000474665 LCE1CQ5T751 118 aa1.61□□□□□ -2.15
LIMD1-204ENST00000474665 LCE3EQ5T5B0 92 aa1.6□□□□□ -2.15
LIMD1-204ENST00000474665 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
LIMD1-204ENST00000474665 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.5□□□□□ -2.17
LIMD1-204ENST00000474665 LCE1FQ5T754 118 aa1.47□□□□□ -2.17
LIMD1-204ENST00000474665 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
LIMD1-204ENST00000474665 PRM1P04553 51 aa1.3□□□□□ -2.2
LIMD1-204ENST00000474665 KRTAP4-4Q9BYR3 166 aa1.26□□□□□ -2.21
LIMD1-204ENST00000474665 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
LIMD1-204ENST00000474665 MUC19Q7Z5P9 8384 aa1.24□□□□□ -2.21
LIMD1-204ENST00000474665 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 70.7 ms