RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CFAP54Q96N23 3096 aa-2.07□□□□□ -2.74
CCDC88A-212ENST00000474059 SMIM2Q9BVW6 85 aa-2.08□□□□□ -2.74
CCDC88A-212ENST00000474059 ADCY10Q96PN6 1610 aa-2.09□□□□□ -2.74
CCDC88A-212ENST00000474059 CLTCL1P53675 1640 aa-2.09□□□□□ -2.74
CCDC88A-212ENST00000474059 CEP350Q5VT06 3117 aa-2.11□□□□□ -2.75
CCDC88A-212ENST00000474059 CENPEQ02224 2701 aa-2.11□□□□□ -2.75
CCDC88A-212ENST00000474059 WDFY3Q8IZQ1 3526 aa-2.12□□□□□ -2.75
CCDC88A-212ENST00000474059 ABCC8Q09428 1581 aa-2.12□□□□□ -2.75
CCDC88A-212ENST00000474059 NFAT5O94916 1531 aa-2.12□□□□□ -2.75
CCDC88A-212ENST00000474059 TRPM2O94759 1503 aa-2.13□□□□□ -2.75
CCDC88A-212ENST00000474059 FANCD2Q9BXW9 1451 aa-2.17□□□□□ -2.76
CCDC88A-212ENST00000474059 PCNTO95613 3336 aa-2.19□□□□□ -2.76
CCDC88A-212ENST00000474059 CMC2Q9NRP2 79 aa-2.19□□□□□ -2.76
CCDC88A-212ENST00000474059 SMIM31A0A1B0GVY4 71 aa-2.21□□□□□ -2.76
CCDC88A-212ENST00000474059 FRYLO94915 3013 aa-2.22□□□□□ -2.76
CCDC88A-212ENST00000474059 CEP250Q9BV73 2442 aa-2.26□□□□□ -2.77
CCDC88A-212ENST00000474059 WDFY4Q6ZS81 3184 aa-2.27□□□□□ -2.77
CCDC88A-212ENST00000474059 NDUFA1O15239 70 aa-2.27□□□□□ -2.77
CCDC88A-212ENST00000474059 TTTY10Q9BZA0 68 aa-2.29□□□□□ -2.78
CCDC88A-212ENST00000474059 EP400Q96L91 3159 aa-2.3□□□□□ -2.78
CCDC88A-212ENST00000474059 MUC3AQ02505 3323 aa-2.31□□□□□ -2.78
CCDC88A-212ENST00000474059 DCHS1Q96JQ0 3298 aa-2.32□□□□□ -2.78
CCDC88A-212ENST00000474059 SZT2Q5T011 3432 aa-2.33□□□□□ -2.78
CCDC88A-212ENST00000474059 ERICH3Q5RHP9 1530 aa-2.39□□□□□ -2.79
CCDC88A-212ENST00000474059 DNAH14Q0VDD8 3507 aa-2.4□□□□□ -2.79
CCDC88A-212ENST00000474059 MKI67P46013 3256 aaKnown RBP-2.41□□□□□ -2.8
CCDC88A-212ENST00000474059 CFAP47Q6ZTR5 3102 aa-2.42□□□□□ -2.8
CCDC88A-212ENST00000474059 TOMM7Q9P0U1 55 aa-2.44□□□□□ -2.8
CCDC88A-212ENST00000474059 USP34Q70CQ2 3546 aa-2.5□□□□□ -2.81
CCDC88A-212ENST00000474059 DNAH12Q6ZR08 3092 aa-2.51□□□□□ -2.81
CCDC88A-212ENST00000474059 LINC01590Q5TEZ4 76 aa-2.51□□□□□ -2.81
CCDC88A-212ENST00000474059 RHPN1-AS1Q9BWJ2 59 aa-2.55□□□□□ -2.82
CCDC88A-212ENST00000474059 UNC80Q8N2C7 3258 aa-2.55□□□□□ -2.82
CCDC88A-212ENST00000474059 SNRPGP15A8MWD9 76 aa-2.56□□□□□ -2.82
CCDC88A-212ENST00000474059 DEFB133Q30KQ1 61 aa-2.57□□□□□ -2.82
CCDC88A-212ENST00000474059 DUOX1Q9NRD9 1551 aa-2.58□□□□□ -2.82
CCDC88A-212ENST00000474059 CD52P31358 61 aa-2.59□□□□□ -2.82
CCDC88A-212ENST00000474059 SAMD9LQ8IVG5 1584 aa-2.59□□□□□ -2.82
CCDC88A-212ENST00000474059 XIRP2A4UGR9 3374 aa-2.61□□□□□ -2.83
CCDC88A-212ENST00000474059 IQGAP2Q13576 1575 aa-2.64□□□□□ -2.83
CCDC88A-212ENST00000474059 LOC400499M0QZD8 3231 aa-2.64□□□□□ -2.83
CCDC88A-212ENST00000474059 RPL39P62891 51 aaKnown RBP-2.65□□□□□ -2.83
CCDC88A-212ENST00000474059 HTN1P15515 57 aa-2.66□□□□□ -2.84
CCDC88A-212ENST00000474059 CENPFP49454 3210 aa-2.66□□□□□ -2.84
CCDC88A-212ENST00000474059 ASPMQ8IZT6 3477 aa-2.67□□□□□ -2.84
CCDC88A-212ENST00000474059 A0A096LNI7 61 aa-2.68□□□□□ -2.84
CCDC88A-212ENST00000474059 KRTAP19-2Q3LHN2 52 aa-2.68□□□□□ -2.84
CCDC88A-212ENST00000474059 VCANP13611 3396 aa-2.69□□□□□ -2.84
CCDC88A-212ENST00000474059 ATP7AQ04656 1500 aa-2.73□□□□□ -2.85
CCDC88A-212ENST00000474059 TOP2AP11388 1531 aaKnown RBP-2.76□□□□□ -2.85
CCDC88A-212ENST00000474059 CDH23Q9H251 3354 aa-2.77□□□□□ -2.85
CCDC88A-212ENST00000474059 RPL39LQ96EH5 51 aaKnown RBP-2.77□□□□□ -2.85
CCDC88A-212ENST00000474059 BRCA2P51587 3418 aa-2.77□□□□□ -2.85
CCDC88A-212ENST00000474059 MROH2BQ7Z745 1585 aa-2.78□□□□□ -2.86
CCDC88A-212ENST00000474059 TOMM5Q8N4H5 51 aa-2.8□□□□□ -2.86
CCDC88A-212ENST00000474059 DEFB124Q8NES8 71 aa-2.83□□□□□ -2.86
CCDC88A-212ENST00000474059 VPS13AQ96RL7 3174 aa-2.87□□□□□ -2.87
CCDC88A-212ENST00000474059 DEFB104AQ8WTQ1 72 aa-2.94□□□□□ -2.88
CCDC88A-212ENST00000474059 LINC01556Q5JQF7 62 aa-2.98□□□□□ -2.89
CCDC88A-212ENST00000474059 UTRNP46939 3433 aa-3.07□□□□□ -2.9
CCDC88A-212ENST00000474059 H3BUX3 64 aa-3.12□□□□□ -2.91
CCDC88A-212ENST00000474059 K7EIM0 57 aa-3.25□□□□□ -2.93
CCDC88A-212ENST00000474059 APELAP0DMC3 54 aa-3.3□□□□□ -2.94
CCDC88A-212ENST00000474059 GCC2Q8IWJ2 1684 aa-3.31□□□□□ -2.94
CCDC88A-212ENST00000474059 A0A096LPF7 62 aa-3.36□□□□□ -2.95
CCDC88A-212ENST00000474059 ARHGAP5-AS1Q96IT6 56 aa-3.36□□□□□ -2.95
CCDC88A-212ENST00000474059 HTN3P15516 51 aa-3.42□□□□□ -2.96
CCDC88A-212ENST00000474059 GOLGB1Q14789 3259 aaKnown RBP-3.43□□□□□ -2.96
CCDC88A-212ENST00000474059 PRCDQ00LT1 54 aa-3.43□□□□□ -2.96
CCDC88A-212ENST00000474059 SNRPGP62308 76 aaKnown RBP-3.45□□□□□ -2.96
CCDC88A-212ENST00000474059 TMEM167AQ8TBQ9 72 aa-3.55□□□□□ -2.98
CCDC88A-212ENST00000474059 Q9Y3F1 56 aa-3.64□□□□□ -2.99
CCDC88A-212ENST00000474059 H3BSH0 61 aa-3.68□□□□□ -3
CCDC88A-212ENST00000474059 RPL39P5Q59GN2 51 aa-3.77□□□□□ -3.01
CCDC88A-212ENST00000474059 COX14Q96I36 57 aa-3.86□□□□□ -3.03
CCDC88A-212ENST00000474059 DEFB108AA8MXU0 73 aa-3.87□□□□□ -3.03
CCDC88A-212ENST00000474059 DEFB108BQ8NET1 73 aa-4.13□□□□□ -3.07
CCDC88A-212ENST00000474059 STATHP02808 62 aa-4.28□□□□□ -3.09
Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms