RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 BRK1Q8WUW1 75 aa5.5□□□□□ -1.53
COL9A3-209ENST00000469852 SPRR2DP22532 72 aa5.48□□□□□ -1.53
COL9A3-209ENST00000469852 MT1EP04732 61 aa5.47□□□□□ -1.53
COL9A3-209ENST00000469852 ROMO1P60602 79 aa5.47□□□□□ -1.53
COL9A3-209ENST00000469852 LCE3BQ5TA77 95 aa5.36□□□□□ -1.55
COL9A3-209ENST00000469852 KRTAP19-3Q7Z4W3 81 aa5.33□□□□□ -1.56
COL9A3-209ENST00000469852 KRTAP12-3P60328 96 aa5.32□□□□□ -1.56
COL9A3-209ENST00000469852 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
COL9A3-209ENST00000469852 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
COL9A3-209ENST00000469852 MT1LQ93083 61 aa5.3□□□□□ -1.56
COL9A3-209ENST00000469852 MT1GP13640 62 aa5.22□□□□□ -1.57
COL9A3-209ENST00000469852 PP632Q6XCG6 107 aa5.18□□□□□ -1.58
COL9A3-209ENST00000469852 MT1MQ8N339 61 aa5.18□□□□□ -1.58
COL9A3-209ENST00000469852 PMAIP1Q13794 54 aa5.17□□□□□ -1.58
COL9A3-209ENST00000469852 GPR98Q8WXG9 6306 aa5.14□□□□□ -1.59
COL9A3-209ENST00000469852 PRO0628Q9UI54 55 aa5.12□□□□□ -1.59
COL9A3-209ENST00000469852 KRTAP4-7Q9BYR0 210 aa5.11□□□□□ -1.59
COL9A3-209ENST00000469852 KRTAP4-3Q9BYR4 195 aa5.11□□□□□ -1.59
COL9A3-209ENST00000469852 KRTAP15-1Q3LI76 137 aa5.09□□□□□ -1.59
COL9A3-209ENST00000469852 KRTAP4-9Q9BYQ8 210 aa5.08□□□□□ -1.6
COL9A3-209ENST00000469852 DSTQ03001 7570 aaKnown RBP5.08□□□□□ -1.6
COL9A3-209ENST00000469852 PRAC1Q96KF2 57 aa4.97□□□□□ -1.61
COL9A3-209ENST00000469852 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
COL9A3-209ENST00000469852 KRTAP19-4Q3LI73 84 aa4.94□□□□□ -1.62
COL9A3-209ENST00000469852 LCE1DQ5T752 114 aa4.93□□□□□ -1.62
COL9A3-209ENST00000469852 HMCN1Q96RW7 5635 aa4.84□□□□□ -1.64
COL9A3-209ENST00000469852 LOC100996750A0A140TA64 210 aa4.82□□□□□ -1.64
COL9A3-209ENST00000469852 MT4P47944 62 aa4.82□□□□□ -1.64
COL9A3-209ENST00000469852 LCE4AQ5TA78 99 aa4.82□□□□□ -1.64
COL9A3-209ENST00000469852 KTN1-AS1Q86SY8 53 aa4.81□□□□□ -1.64
COL9A3-209ENST00000469852 KRTAP5-10Q6L8G5 202 aa4.74□□□□□ -1.65
COL9A3-209ENST00000469852 AHNAK2Q8IVF2 5795 aa4.74□□□□□ -1.65
COL9A3-209ENST00000469852 KRTAP9-6A8MVA2 160 aa4.73□□□□□ -1.65
COL9A3-209ENST00000469852 KRTAP5-4Q6L8H1 288 aa4.73□□□□□ -1.65
COL9A3-209ENST00000469852 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
COL9A3-209ENST00000469852 KRTAP4-6Q9BYQ5 205 aa4.69□□□□□ -1.66
COL9A3-209ENST00000469852 KRTAP5-7Q6L8G8 165 aa4.59□□□□□ -1.67
COL9A3-209ENST00000469852 KRTAP5-3Q6L8H2 238 aa4.55□□□□□ -1.68
COL9A3-209ENST00000469852 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
COL9A3-209ENST00000469852 MT1AP04731 61 aa4.49□□□□□ -1.69
COL9A3-209ENST00000469852 SPRR5A0A1B0GTR4 108 aa4.48□□□□□ -1.69
COL9A3-209ENST00000469852 KRTAP6-1Q3LI64 71 aa4.48□□□□□ -1.69
COL9A3-209ENST00000469852 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
COL9A3-209ENST00000469852 KRTAP12-4P60329 112 aa4.43□□□□□ -1.7
COL9A3-209ENST00000469852 KRTAP9-4Q9BYQ2 154 aa4.3□□□□□ -1.72
COL9A3-209ENST00000469852 H3BS24 57 aa4.25□□□□□ -1.73
COL9A3-209ENST00000469852 KRTAP5-2Q701N4 177 aa4.2□□□□□ -1.74
COL9A3-209ENST00000469852 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
COL9A3-209ENST00000469852 KRTAP4-11Q9BYQ6 195 aa4.14□□□□□ -1.75
COL9A3-209ENST00000469852 MT3P25713 68 aa4.06□□□□□ -1.76
COL9A3-209ENST00000469852 KRTAP5-8O75690 187 aa4.03□□□□□ -1.76
COL9A3-209ENST00000469852 LUZP6Q538Z0 58 aa4□□□□□ -1.77
COL9A3-209ENST00000469852 MUC5ACP98088 5654 aa3.97□□□□□ -1.77
COL9A3-209ENST00000469852 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
COL9A3-209ENST00000469852 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
COL9A3-209ENST00000469852 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
COL9A3-209ENST00000469852 A0A0A0MQY5 61 aa3.83□□□□□ -1.8
COL9A3-209ENST00000469852 KRTAP9-9Q9BYP9 154 aa3.82□□□□□ -1.8
COL9A3-209ENST00000469852 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
COL9A3-209ENST00000469852 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
COL9A3-209ENST00000469852 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
COL9A3-209ENST00000469852 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
COL9A3-209ENST00000469852 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
COL9A3-209ENST00000469852 KRTAP4-2Q9BYR5 136 aa3.46□□□□□ -1.86
COL9A3-209ENST00000469852 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
COL9A3-209ENST00000469852 LCE1CQ5T751 118 aa3.38□□□□□ -1.87
COL9A3-209ENST00000469852 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.13□□□□□ -1.91
COL9A3-209ENST00000469852 KRTAP4-12Q9BQ66 201 aa3.08□□□□□ -1.92
COL9A3-209ENST00000469852 KRTAP5-11Q6L8G4 156 aa3.04□□□□□ -1.92
COL9A3-209ENST00000469852 KRTAP21-2Q3LI59 83 aa2.95□□□□□ -1.94
COL9A3-209ENST00000469852 INE1O15225 51 aa2.94□□□□□ -1.94
COL9A3-209ENST00000469852 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
COL9A3-209ENST00000469852 PRM1P04553 51 aa2.85□□□□□ -1.95
COL9A3-209ENST00000469852 PHGR1C9JFL3 82 aa2.75□□□□□ -1.97
COL9A3-209ENST00000469852 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
COL9A3-209ENST00000469852 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
COL9A3-209ENST00000469852 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
COL9A3-209ENST00000469852 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 69.9 ms