RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SPATA8Q6RVD6 105 aa5.18□□□□□ -1.58
COL28A1-206ENST00000465339 A0A0D9SG42 100 aa5.16□□□□□ -1.58
COL28A1-206ENST00000465339 SPRR2EP22531 72 aa5.12□□□□□ -1.59
COL28A1-206ENST00000465339 SPRR2BP35325 72 aa5.12□□□□□ -1.59
COL28A1-206ENST00000465339 SPRR2AP35326 72 aa5.12□□□□□ -1.59
COL28A1-206ENST00000465339 SPINT4Q6UDR6 99 aa5.1□□□□□ -1.59
COL28A1-206ENST00000465339 MDN1Q9NU22 5596 aa5.09□□□□□ -1.59
COL28A1-206ENST00000465339 KRTAP12-1P59990 96 aa5.07□□□□□ -1.6
COL28A1-206ENST00000465339 PRR15LQ9BU68 103 aa5.07□□□□□ -1.6
COL28A1-206ENST00000465339 LUZP6Q538Z0 58 aa5.04□□□□□ -1.6
COL28A1-206ENST00000465339 KRTAP2-3P0C7H8 128 aa5.03□□□□□ -1.6
COL28A1-206ENST00000465339 KRTAP2-4Q9BYR9 128 aa5.03□□□□□ -1.6
COL28A1-206ENST00000465339 K7ERS5 55 aa5.02□□□□□ -1.61
COL28A1-206ENST00000465339 LINC01558Q9Y6Z2 57 aa5.02□□□□□ -1.61
COL28A1-206ENST00000465339 A8MU10 97 aa4.99□□□□□ -1.61
COL28A1-206ENST00000465339 KRTAP5-11Q6L8G4 156 aa4.96□□□□□ -1.62
COL28A1-206ENST00000465339 SPRR2DP22532 72 aa4.95□□□□□ -1.62
COL28A1-206ENST00000465339 A6NED7 52 aa4.93□□□□□ -1.62
COL28A1-206ENST00000465339 UQCR11O14957 56 aa4.9□□□□□ -1.63
COL28A1-206ENST00000465339 LCE1EQ5T753 118 aa4.9□□□□□ -1.63
COL28A1-206ENST00000465339 Q1T7F1 81 aa4.88□□□□□ -1.63
COL28A1-206ENST00000465339 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
COL28A1-206ENST00000465339 KRTAP2-1Q9BYU5 128 aa4.87□□□□□ -1.63
COL28A1-206ENST00000465339 TNP1P09430 55 aa4.84□□□□□ -1.63
COL28A1-206ENST00000465339 C10orf95Q9H7T3 257 aa4.84□□□□□ -1.63
COL28A1-206ENST00000465339 MT1EP04732 61 aa4.83□□□□□ -1.64
COL28A1-206ENST00000465339 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.81□□□□□ -1.64
COL28A1-206ENST00000465339 ROMO1P60602 79 aa4.79□□□□□ -1.64
COL28A1-206ENST00000465339 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
COL28A1-206ENST00000465339 MIR22HGQ0VDD5 57 aa4.78□□□□□ -1.64
COL28A1-206ENST00000465339 KRTAP19-3Q7Z4W3 81 aa4.78□□□□□ -1.64
COL28A1-206ENST00000465339 LCE1FQ5T754 118 aa4.75□□□□□ -1.65
COL28A1-206ENST00000465339 LCE3AQ5TA76 89 aa4.73□□□□□ -1.65
COL28A1-206ENST00000465339 MT1GP13640 62 aa4.72□□□□□ -1.65
COL28A1-206ENST00000465339 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
COL28A1-206ENST00000465339 PP632Q6XCG6 107 aa4.68□□□□□ -1.66
COL28A1-206ENST00000465339 MT1LQ93083 61 aa4.64□□□□□ -1.67
COL28A1-206ENST00000465339 KRTAP25-1Q3LHN0 102 aa4.62□□□□□ -1.67
COL28A1-206ENST00000465339 DSTQ03001 7570 aaKnown RBP4.59□□□□□ -1.67
COL28A1-206ENST00000465339 MT1MQ8N339 61 aa4.59□□□□□ -1.67
COL28A1-206ENST00000465339 KRTAP12-3P60328 96 aa4.58□□□□□ -1.68
COL28A1-206ENST00000465339 GPR98Q8WXG9 6306 aa4.53□□□□□ -1.68
COL28A1-206ENST00000465339 KRTAP4-3Q9BYR4 195 aa4.46□□□□□ -1.7
COL28A1-206ENST00000465339 LCE3CQ5T5A8 94 aa4.45□□□□□ -1.7
COL28A1-206ENST00000465339 KRTAP9-6A8MVA2 160 aa4.41□□□□□ -1.7
COL28A1-206ENST00000465339 KRTAP5-4Q6L8H1 288 aa4.33□□□□□ -1.72
COL28A1-206ENST00000465339 MT4P47944 62 aa4.3□□□□□ -1.72
COL28A1-206ENST00000465339 KRTAP5-1Q6L8H4 278 aa4.22□□□□□ -1.73
COL28A1-206ENST00000465339 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
COL28A1-206ENST00000465339 KRTAP5-5Q701N2 237 aaPredicted RBP4.2□□□□□ -1.74
COL28A1-206ENST00000465339 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
COL28A1-206ENST00000465339 KRTAP5-10Q6L8G5 202 aa4.11□□□□□ -1.75
COL28A1-206ENST00000465339 SPRR5A0A1B0GTR4 108 aa4.1□□□□□ -1.75
COL28A1-206ENST00000465339 KRTAP12-4P60329 112 aa4.1□□□□□ -1.75
COL28A1-206ENST00000465339 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
COL28A1-206ENST00000465339 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
COL28A1-206ENST00000465339 KRTAP4-4Q9BYR3 166 aa4.01□□□□□ -1.77
COL28A1-206ENST00000465339 KRTAP5-7Q6L8G8 165 aa3.97□□□□□ -1.77
COL28A1-206ENST00000465339 MT1AP04731 61 aa3.96□□□□□ -1.78
COL28A1-206ENST00000465339 SYNE1Q8NF91 8797 aaKnown RBP3.95□□□□□ -1.78
COL28A1-206ENST00000465339 INE1O15225 51 aa3.92□□□□□ -1.78
COL28A1-206ENST00000465339 KRTAP6-1Q3LI64 71 aa3.91□□□□□ -1.78
COL28A1-206ENST00000465339 KRTAP5-2Q701N4 177 aa3.81□□□□□ -1.8
COL28A1-206ENST00000465339 OBSCNQ5VST9 7968 aa3.76□□□□□ -1.81
COL28A1-206ENST00000465339 KRTAP6-2Q3LI66 62 aa3.72□□□□□ -1.81
COL28A1-206ENST00000465339 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
COL28A1-206ENST00000465339 LCE3DQ9BYE3 92 aa3.5□□□□□ -1.85
COL28A1-206ENST00000465339 AHNAKQ09666 5890 aaKnown RBP3.49□□□□□ -1.85
COL28A1-206ENST00000465339 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
COL28A1-206ENST00000465339 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
COL28A1-206ENST00000465339 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
COL28A1-206ENST00000465339 LCE1BQ5T7P3 118 aa3.24□□□□□ -1.89
COL28A1-206ENST00000465339 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
COL28A1-206ENST00000465339 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
COL28A1-206ENST00000465339 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
COL28A1-206ENST00000465339 PRM1P04553 51 aa2.23□□□□□ -2.05
COL28A1-206ENST00000465339 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
COL28A1-206ENST00000465339 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 60.6 ms