RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
LIMD1-203ENST00000465039 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
LIMD1-203ENST00000465039 MT1GP13640 62 aa4.95□□□□□ -1.62
LIMD1-203ENST00000465039 PP632Q6XCG6 107 aa4.94□□□□□ -1.62
LIMD1-203ENST00000465039 KRTAP2-2Q9BYT5 123 aa4.92□□□□□ -1.62
LIMD1-203ENST00000465039 KRTAP2-1Q9BYU5 128 aa4.92□□□□□ -1.62
LIMD1-203ENST00000465039 KRTAP12-3P60328 96 aa4.91□□□□□ -1.62
LIMD1-203ENST00000465039 ROMO1P60602 79 aa4.9□□□□□ -1.63
LIMD1-203ENST00000465039 MT1LQ93083 61 aa4.9□□□□□ -1.63
LIMD1-203ENST00000465039 LCE3BQ5TA77 95 aa4.89□□□□□ -1.63
LIMD1-203ENST00000465039 DSTQ03001 7570 aaKnown RBP4.84□□□□□ -1.63
LIMD1-203ENST00000465039 KRTAP19-4Q3LI73 84 aa4.82□□□□□ -1.64
LIMD1-203ENST00000465039 MT1MQ8N339 61 aa4.82□□□□□ -1.64
LIMD1-203ENST00000465039 BRK1Q8WUW1 75 aa4.7□□□□□ -1.66
LIMD1-203ENST00000465039 KRTAP15-1Q3LI76 137 aa4.67□□□□□ -1.66
LIMD1-203ENST00000465039 KRTAP4-3Q9BYR4 195 aa4.6□□□□□ -1.67
LIMD1-203ENST00000465039 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
LIMD1-203ENST00000465039 LCE4AQ5TA78 99 aa4.55□□□□□ -1.68
LIMD1-203ENST00000465039 LCE3CQ5T5A8 94 aa4.54□□□□□ -1.68
LIMD1-203ENST00000465039 KRTAP5-4Q6L8H1 288 aa4.51□□□□□ -1.69
LIMD1-203ENST00000465039 PMAIP1Q13794 54 aa4.45□□□□□ -1.7
LIMD1-203ENST00000465039 KRTAP5-5Q701N2 237 aaPredicted RBP4.43□□□□□ -1.7
LIMD1-203ENST00000465039 HMCN1Q96RW7 5635 aa4.41□□□□□ -1.7
LIMD1-203ENST00000465039 LCE1DQ5T752 114 aa4.41□□□□□ -1.7
LIMD1-203ENST00000465039 KRTAP4-9Q9BYQ8 210 aa4.41□□□□□ -1.7
LIMD1-203ENST00000465039 PRO0628Q9UI54 55 aa4.37□□□□□ -1.71
LIMD1-203ENST00000465039 GPR98Q8WXG9 6306 aa4.35□□□□□ -1.71
LIMD1-203ENST00000465039 MT4P47944 62 aa4.35□□□□□ -1.71
LIMD1-203ENST00000465039 LOC100996750A0A140TA64 210 aa4.31□□□□□ -1.72
LIMD1-203ENST00000465039 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
LIMD1-203ENST00000465039 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
LIMD1-203ENST00000465039 KRTAP4-6Q9BYQ5 205 aa4.26□□□□□ -1.73
LIMD1-203ENST00000465039 KRTAP9-6A8MVA2 160 aa4.22□□□□□ -1.73
LIMD1-203ENST00000465039 MT1AP04731 61 aa4.2□□□□□ -1.74
LIMD1-203ENST00000465039 KRTAP20-2Q3LI61 65 aa4.2□□□□□ -1.74
LIMD1-203ENST00000465039 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
LIMD1-203ENST00000465039 AHNAK2Q8IVF2 5795 aa4.16□□□□□ -1.74
LIMD1-203ENST00000465039 PRAC1Q96KF2 57 aa4.14□□□□□ -1.75
LIMD1-203ENST00000465039 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
LIMD1-203ENST00000465039 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.75
LIMD1-203ENST00000465039 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
LIMD1-203ENST00000465039 KRTAP5-10Q6L8G5 202 aa4.03□□□□□ -1.76
LIMD1-203ENST00000465039 KRTAP9-4Q9BYQ2 154 aa4.01□□□□□ -1.77
LIMD1-203ENST00000465039 KRTAP5-2Q701N4 177 aa4□□□□□ -1.77
LIMD1-203ENST00000465039 KRTAP5-7Q6L8G8 165 aa3.89□□□□□ -1.79
LIMD1-203ENST00000465039 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
LIMD1-203ENST00000465039 SVIPQ8NHG7 77 aa3.85□□□□□ -1.79
LIMD1-203ENST00000465039 MT3P25713 68 aa3.84□□□□□ -1.79
LIMD1-203ENST00000465039 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
LIMD1-203ENST00000465039 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
LIMD1-203ENST00000465039 KRTAP5-8O75690 187 aa3.64□□□□□ -1.83
LIMD1-203ENST00000465039 LUZP6Q538Z0 58 aa3.59□□□□□ -1.83
LIMD1-203ENST00000465039 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
LIMD1-203ENST00000465039 KRTAP5-1Q6L8H4 278 aa3.51□□□□□ -1.85
LIMD1-203ENST00000465039 MUC5ACP98088 5654 aa3.47□□□□□ -1.85
LIMD1-203ENST00000465039 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
LIMD1-203ENST00000465039 AHNAKQ09666 5890 aaKnown RBP3.43□□□□□ -1.86
LIMD1-203ENST00000465039 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
LIMD1-203ENST00000465039 LCE3DQ9BYE3 92 aa3.33□□□□□ -1.88
LIMD1-203ENST00000465039 LCE1CQ5T751 118 aa3.25□□□□□ -1.89
LIMD1-203ENST00000465039 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
LIMD1-203ENST00000465039 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
LIMD1-203ENST00000465039 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
LIMD1-203ENST00000465039 NDUFAF8A1L188 74 aa3.02□□□□□ -1.93
LIMD1-203ENST00000465039 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
LIMD1-203ENST00000465039 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
LIMD1-203ENST00000465039 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
LIMD1-203ENST00000465039 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
LIMD1-203ENST00000465039 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
LIMD1-203ENST00000465039 A0A0A0MQY5 61 aa2.58□□□□□ -2
LIMD1-203ENST00000465039 INE1O15225 51 aa2.58□□□□□ -2
LIMD1-203ENST00000465039 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
LIMD1-203ENST00000465039 PRM1P04553 51 aa2.47□□□□□ -2.01
LIMD1-203ENST00000465039 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
LIMD1-203ENST00000465039 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
LIMD1-203ENST00000465039 H3BS24 57 aa1.89□□□□□ -2.11
LIMD1-203ENST00000465039 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
LIMD1-203ENST00000465039 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 84.9 ms