RNA–Protein interactions for RNA: ENST00000462970.5

PSMD4-208, Transcript of proteasome 26S subunit, non-ATPase 4, human

TSL 5

Gene PSMD4, Length 900 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMD4-208	ENST00000462970		A8MU10	97 aa		3.86	□□□□□ -1.79
PSMD4-208	ENST00000462970	KRTAP10-7	P60409	375 aa	Predicted RBP	3.86	□□□□□ -1.79
PSMD4-208	ENST00000462970	SPRR2F	Q96RM1	72 aa		3.85	□□□□□ -1.79
PSMD4-208	ENST00000462970	KRTAP12-1	P59990	96 aa		3.8	□□□□□ -1.8
PSMD4-208	ENST00000462970	KRTAP10-12	P60413	245 aa		3.8	□□□□□ -1.8
PSMD4-208	ENST00000462970	SPRR2E	P22531	72 aa		3.79	□□□□□ -1.8
PSMD4-208	ENST00000462970	SPRR2B	P35325	72 aa		3.79	□□□□□ -1.8
PSMD4-208	ENST00000462970	SPRR2A	P35326	72 aa		3.79	□□□□□ -1.8
PSMD4-208	ENST00000462970	KRTAP2-3	P0C7H8	128 aa		3.78	□□□□□ -1.8
PSMD4-208	ENST00000462970	KRTAP2-4	Q9BYR9	128 aa		3.78	□□□□□ -1.8
PSMD4-208	ENST00000462970	UQCR11	O14957	56 aa		3.73	□□□□□ -1.81
PSMD4-208	ENST00000462970	MIR22HG	Q0VDD5	57 aa		3.71	□□□□□ -1.82
PSMD4-208	ENST00000462970	LCE1A	Q5T7P2	110 aa		3.71	□□□□□ -1.82
PSMD4-208	ENST00000462970	PRAC1	Q96KF2	57 aa		3.71	□□□□□ -1.82
PSMD4-208	ENST00000462970	SPRR2D	P22532	72 aa		3.66	□□□□□ -1.82
PSMD4-208	ENST00000462970	KRTAP2-2	Q9BYT5	123 aa		3.66	□□□□□ -1.82
PSMD4-208	ENST00000462970	KRTAP2-1	Q9BYU5	128 aa		3.66	□□□□□ -1.82
PSMD4-208	ENST00000462970	C10orf95	Q9H7T3	257 aa		3.63	□□□□□ -1.83
PSMD4-208	ENST00000462970	TNP1	P09430	55 aa		3.61	□□□□□ -1.83
PSMD4-208	ENST00000462970		K7ERS5	55 aa		3.58	□□□□□ -1.84
PSMD4-208	ENST00000462970	KRTAP19-5	Q3LI72	72 aa		3.57	□□□□□ -1.84
PSMD4-208	ENST00000462970	KRTAP19-7	Q3SYF9	63 aa		3.57	□□□□□ -1.84
PSMD4-208	ENST00000462970	MT1E	P04732	61 aa		3.56	□□□□□ -1.84
PSMD4-208	ENST00000462970	MT3	P25713	68 aa		3.55	□□□□□ -1.84
PSMD4-208	ENST00000462970	LCE3A	Q5TA76	89 aa		3.55	□□□□□ -1.84
PSMD4-208	ENST00000462970	KRTAP25-1	Q3LHN0	102 aa		3.54	□□□□□ -1.84
PSMD4-208	ENST00000462970	KRTAP19-3	Q7Z4W3	81 aa		3.5	□□□□□ -1.85
PSMD4-208	ENST00000462970	GPR98	Q8WXG9	6306 aa		3.49	□□□□□ -1.85
PSMD4-208	ENST00000462970	NDUFAF8	A1L188	74 aa		3.49	□□□□□ -1.85
PSMD4-208	ENST00000462970	ROMO1	P60602	79 aa		3.49	□□□□□ -1.85
PSMD4-208	ENST00000462970	DST	Q03001	7570 aa	Known RBP	3.49	□□□□□ -1.85
PSMD4-208	ENST00000462970	MT1G	P13640	62 aa		3.43	□□□□□ -1.86
PSMD4-208	ENST00000462970	PP632	Q6XCG6	107 aa		3.43	□□□□□ -1.86
PSMD4-208	ENST00000462970	MT1L	Q93083	61 aa		3.43	□□□□□ -1.86
PSMD4-208	ENST00000462970	KRTAP12-3	P60328	96 aa		3.41	□□□□□ -1.86
PSMD4-208	ENST00000462970	MT1M	Q8N339	61 aa		3.39	□□□□□ -1.87
PSMD4-208	ENST00000462970	KRTAP4-3	Q9BYR4	195 aa		3.34	□□□□□ -1.87
PSMD4-208	ENST00000462970	KRTAP5-3	Q6L8H2	238 aa		3.32	□□□□□ -1.88
PSMD4-208	ENST00000462970	MT4	P47944	62 aa		3.25	□□□□□ -1.89
PSMD4-208	ENST00000462970	HMCN1	Q96RW7	5635 aa		3.2	□□□□□ -1.9
PSMD4-208	ENST00000462970	AHNAK2	Q8IVF2	5795 aa		3.15	□□□□□ -1.9
PSMD4-208	ENST00000462970	LCE3C	Q5T5A8	94 aa		3.14	□□□□□ -1.91
PSMD4-208	ENST00000462970	LUZP6	Q538Z0	58 aa		3.11	□□□□□ -1.91
PSMD4-208	ENST00000462970	KRTAP5-4	Q6L8H1	288 aa		3.11	□□□□□ -1.91
PSMD4-208	ENST00000462970	LCE1F	Q5T754	118 aa		3.08	□□□□□ -1.92
PSMD4-208	ENST00000462970	KRTAP5-10	Q6L8G5	202 aa		3.07	□□□□□ -1.92
PSMD4-208	ENST00000462970	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.04	□□□□□ -1.92
PSMD4-208	ENST00000462970	KRTAP12-4	P60329	112 aa		3	□□□□□ -1.93
PSMD4-208	ENST00000462970	KRTAP20-2	Q3LI61	65 aa		2.97	□□□□□ -1.93
PSMD4-208	ENST00000462970	SPRR5	A0A1B0GTR4	108 aa		2.96	□□□□□ -1.94
PSMD4-208	ENST00000462970	KRTAP5-7	Q6L8G8	165 aa		2.96	□□□□□ -1.94
PSMD4-208	ENST00000462970	SYNE1	Q8NF91	8797 aa	Known RBP	2.95	□□□□□ -1.94
PSMD4-208	ENST00000462970	KRTAP9-6	A8MVA2	160 aa		2.94	□□□□□ -1.94
PSMD4-208	ENST00000462970	MT1A	P04731	61 aa		2.92	□□□□□ -1.94
PSMD4-208	ENST00000462970	LCE1E	Q5T753	118 aa		2.91	□□□□□ -1.94
PSMD4-208	ENST00000462970	KRTAP6-1	Q3LI64	71 aa		2.9	□□□□□ -1.95
PSMD4-208	ENST00000462970	KRTAP6-2	Q3LI66	62 aa		2.76	□□□□□ -1.97
PSMD4-208	ENST00000462970	INE1	O15225	51 aa		2.74	□□□□□ -1.97
PSMD4-208	ENST00000462970	KRTAP5-2	Q701N4	177 aa		2.74	□□□□□ -1.97
PSMD4-208	ENST00000462970	KRTAP5-11	Q6L8G4	156 aa		2.68	□□□□□ -1.98
PSMD4-208	ENST00000462970	OBSCN	Q5VST9	7968 aa		2.66	□□□□□ -1.98
PSMD4-208	ENST00000462970	KRTAP5-8	O75690	187 aa		2.65	□□□□□ -1.99
PSMD4-208	ENST00000462970	AHNAK	Q09666	5890 aa	Known RBP	2.64	□□□□□ -1.99
PSMD4-208	ENST00000462970	LCE3E	Q5T5B0	92 aa		2.63	□□□□□ -1.99
PSMD4-208	ENST00000462970	MUC5AC	P98088	5654 aa		2.61	□□□□□ -1.99
PSMD4-208	ENST00000462970	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.59	□□□□□ -1.99
PSMD4-208	ENST00000462970	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.49	□□□□□ -2.01
PSMD4-208	ENST00000462970	KRTAP5-1	Q6L8H4	278 aa		2.46	□□□□□ -2.02
PSMD4-208	ENST00000462970	LCE1B	Q5T7P3	118 aa		2.33	□□□□□ -2.04
PSMD4-208	ENST00000462970	LCE3D	Q9BYE3	92 aa		2.3	□□□□□ -2.04
PSMD4-208	ENST00000462970	LCE1C	Q5T751	118 aa		2.21	□□□□□ -2.06
PSMD4-208	ENST00000462970	KRTAP4-4	Q9BYR3	166 aa		2.05	□□□□□ -2.08
PSMD4-208	ENST00000462970	KRTAP21-2	Q3LI59	83 aa		1.88	□□□□□ -2.11
PSMD4-208	ENST00000462970	PHGR1	C9JFL3	82 aa		1.81	□□□□□ -2.12
PSMD4-208	ENST00000462970	PRM1	P04553	51 aa		1.79	□□□□□ -2.12
PSMD4-208	ENST00000462970	MUC19	Q7Z5P9	8384 aa		1.64	□□□□□ -2.15
PSMD4-208	ENST00000462970	KRTAP21-1	Q3LI58	79 aa		1.34	□□□□□ -2.19
PSMD4-208	ENST00000462970	MUC16	Q8WXI7	14507 aa		1.14	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 69.3 ms