RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	SPINT4	Q6UDR6	99 aa		4.12	□□□□□ -1.75
PTPN7-204	ENST00000462815	AHNAK2	Q8IVF2	5795 aa		4.1	□□□□□ -1.75
PTPN7-204	ENST00000462815	MT4	P47944	62 aa		4.1	□□□□□ -1.75
PTPN7-204	ENST00000462815	CDC42SE1	Q9NRR8	79 aa		4.09	□□□□□ -1.75
PTPN7-204	ENST00000462815	LCE4A	Q5TA78	99 aa		4.06	□□□□□ -1.76
PTPN7-204	ENST00000462815	MT1G	P13640	62 aa		4.04	□□□□□ -1.76
PTPN7-204	ENST00000462815	CAMK2N1	Q7Z7J9	78 aa		4.04	□□□□□ -1.76
PTPN7-204	ENST00000462815	KRTAP5-10	Q6L8G5	202 aa		4.03	□□□□□ -1.76
PTPN7-204	ENST00000462815	KRTAP19-5	Q3LI72	72 aa		4.02	□□□□□ -1.77
PTPN7-204	ENST00000462815	KRTAP5-4	Q6L8H1	288 aa		4.02	□□□□□ -1.77
PTPN7-204	ENST00000462815	MT1M	Q8N339	61 aa		4.01	□□□□□ -1.77
PTPN7-204	ENST00000462815		K7ERS5	55 aa		3.99	□□□□□ -1.77
PTPN7-204	ENST00000462815	C10orf95	Q9H7T3	257 aa		3.98	□□□□□ -1.77
PTPN7-204	ENST00000462815	BRK1	Q8WUW1	75 aa		3.97	□□□□□ -1.77
PTPN7-204	ENST00000462815	MT1L	Q93083	61 aa		3.97	□□□□□ -1.77
PTPN7-204	ENST00000462815	PP632	Q6XCG6	107 aa		3.96	□□□□□ -1.78
PTPN7-204	ENST00000462815	KRTAP4-6	Q9BYQ5	205 aa		3.95	□□□□□ -1.78
PTPN7-204	ENST00000462815	KRTAP4-3	Q9BYR4	195 aa		3.93	□□□□□ -1.78
PTPN7-204	ENST00000462815	KRTAP5-7	Q6L8G8	165 aa		3.89	□□□□□ -1.79
PTPN7-204	ENST00000462815	KRTAP5-3	Q6L8H2	238 aa		3.85	□□□□□ -1.79
PTPN7-204	ENST00000462815	TNP1	P09430	55 aa		3.84	□□□□□ -1.79
PTPN7-204	ENST00000462815	ROMO1	P60602	79 aa		3.84	□□□□□ -1.79
PTPN7-204	ENST00000462815	SPRR5	A0A1B0GTR4	108 aa		3.8	□□□□□ -1.8
PTPN7-204	ENST00000462815	KRTAP25-1	Q3LHN0	102 aa		3.8	□□□□□ -1.8
PTPN7-204	ENST00000462815	LCE3A	Q5TA76	89 aa		3.8	□□□□□ -1.8
PTPN7-204	ENST00000462815	PRO0628	Q9UI54	55 aa		3.8	□□□□□ -1.8
PTPN7-204	ENST00000462815	KRTAP20-2	Q3LI61	65 aa		3.77	□□□□□ -1.81
PTPN7-204	ENST00000462815	KRTAP4-7	Q9BYR0	210 aa		3.77	□□□□□ -1.81
PTPN7-204	ENST00000462815	PMAIP1	Q13794	54 aa		3.76	□□□□□ -1.81
PTPN7-204	ENST00000462815	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.76	□□□□□ -1.81
PTPN7-204	ENST00000462815	KRTAP23-1	A1A580	65 aa		3.7	□□□□□ -1.82
PTPN7-204	ENST00000462815	SYNE1	Q8NF91	8797 aa	Known RBP	3.67	□□□□□ -1.82
PTPN7-204	ENST00000462815	KRTAP12-3	P60328	96 aa		3.62	□□□□□ -1.83
PTPN7-204	ENST00000462815	KRTAP12-4	P60329	112 aa		3.61	□□□□□ -1.83
PTPN7-204	ENST00000462815	LOC100996750	A0A140TA64	210 aa		3.58	□□□□□ -1.84
PTPN7-204	ENST00000462815	PRAC1	Q96KF2	57 aa		3.56	□□□□□ -1.84
PTPN7-204	ENST00000462815	KTN1-AS1	Q86SY8	53 aa		3.54	□□□□□ -1.84
PTPN7-204	ENST00000462815	KRTAP4-11	Q9BYQ6	195 aa		3.49	□□□□□ -1.85
PTPN7-204	ENST00000462815	KRTAP5-2	Q701N4	177 aa		3.48	□□□□□ -1.85
PTPN7-204	ENST00000462815	KRTAP15-1	Q3LI76	137 aa		3.47	□□□□□ -1.85
PTPN7-204	ENST00000462815	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.44	□□□□□ -1.86
PTPN7-204	ENST00000462815	MUC5AC	P98088	5654 aa		3.43	□□□□□ -1.86
PTPN7-204	ENST00000462815	AHNAK	Q09666	5890 aa	Known RBP	3.43	□□□□□ -1.86
PTPN7-204	ENST00000462815	KRTAP5-8	O75690	187 aa		3.42	□□□□□ -1.86
PTPN7-204	ENST00000462815	KRTAP19-4	Q3LI73	84 aa		3.4	□□□□□ -1.87
PTPN7-204	ENST00000462815	KRTAP6-1	Q3LI64	71 aa		3.37	□□□□□ -1.87
PTPN7-204	ENST00000462815	MT1A	P04731	61 aa		3.35	□□□□□ -1.87
PTPN7-204	ENST00000462815	LCE3C	Q5T5A8	94 aa		3.35	□□□□□ -1.87
PTPN7-204	ENST00000462815	OBSCN	Q5VST9	7968 aa		3.31	□□□□□ -1.88
PTPN7-204	ENST00000462815	SVIP	Q8NHG7	77 aa		3.29	□□□□□ -1.88
PTPN7-204	ENST00000462815	KRTAP9-4	Q9BYQ2	154 aa		3.27	□□□□□ -1.89
PTPN7-204	ENST00000462815	KRTAP9-9	Q9BYP9	154 aa		3.26	□□□□□ -1.89
PTPN7-204	ENST00000462815	KRTAP6-2	Q3LI66	62 aa		3.25	□□□□□ -1.89
PTPN7-204	ENST00000462815	KRTAP9-6	A8MVA2	160 aa		3.22	□□□□□ -1.89
PTPN7-204	ENST00000462815	KRTAP5-1	Q6L8H4	278 aa		3.17	□□□□□ -1.9
PTPN7-204	ENST00000462815	MT3	P25713	68 aa		3.04	□□□□□ -1.92
PTPN7-204	ENST00000462815	LCE1E	Q5T753	118 aa		2.89	□□□□□ -1.95
PTPN7-204	ENST00000462815	LUZP6	Q538Z0	58 aa		2.88	□□□□□ -1.95
PTPN7-204	ENST00000462815		H3BS24	57 aa		2.83	□□□□□ -1.96
PTPN7-204	ENST00000462815	KRTAP4-2	Q9BYR5	136 aa		2.81	□□□□□ -1.96
PTPN7-204	ENST00000462815	LCE1B	Q5T7P3	118 aa		2.75	□□□□□ -1.97
PTPN7-204	ENST00000462815	NDUFAF8	A1L188	74 aa		2.7	□□□□□ -1.98
PTPN7-204	ENST00000462815	LCE1C	Q5T751	118 aa		2.7	□□□□□ -1.98
PTPN7-204	ENST00000462815	KRTAP4-12	Q9BQ66	201 aa		2.64	□□□□□ -1.99
PTPN7-204	ENST00000462815	KRTAP5-11	Q6L8G4	156 aa		2.51	□□□□□ -2.01
PTPN7-204	ENST00000462815	LCE3D	Q9BYE3	92 aa		2.47	□□□□□ -2.01
PTPN7-204	ENST00000462815	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.45	□□□□□ -2.02
PTPN7-204	ENST00000462815		A0A0A0MQY5	61 aa		2.44	□□□□□ -2.02
PTPN7-204	ENST00000462815	LCE1F	Q5T754	118 aa		2.44	□□□□□ -2.02
PTPN7-204	ENST00000462815	LCE3E	Q5T5B0	92 aa		2.39	□□□□□ -2.03
PTPN7-204	ENST00000462815	PHGR1	C9JFL3	82 aa		2.37	□□□□□ -2.03
PTPN7-204	ENST00000462815	KRTAP21-2	Q3LI59	83 aa		2.25	□□□□□ -2.05
PTPN7-204	ENST00000462815	INE1	O15225	51 aa		2.23	□□□□□ -2.05
PTPN7-204	ENST00000462815	KRTAP4-4	Q9BYR3	166 aa		2.09	□□□□□ -2.07
PTPN7-204	ENST00000462815	MUC19	Q7Z5P9	8384 aa		2.04	□□□□□ -2.08
PTPN7-204	ENST00000462815	PRM1	P04553	51 aa		1.99	□□□□□ -2.09
PTPN7-204	ENST00000462815	KRTAP21-1	Q3LI58	79 aa		1.77	□□□□□ -2.13
PTPN7-204	ENST00000462815	MUC16	Q8WXI7	14507 aa		1.45	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 94.4 ms