RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CDC42SE1Q9NRR8 79 aa8.28□□□□□ -1.08
CCDC28B-203ENST00000461819 LCE3BQ5TA77 95 aa8.23□□□□□ -1.09
CCDC28B-203ENST00000461819 KRTAP2-2Q9BYT5 123 aa8.2□□□□□ -1.1
CCDC28B-203ENST00000461819 KRTAP2-1Q9BYU5 128 aa8.2□□□□□ -1.1
CCDC28B-203ENST00000461819 MT1GP13640 62 aa8.16□□□□□ -1.1
CCDC28B-203ENST00000461819 MT1LQ93083 61 aa8.15□□□□□ -1.1
CCDC28B-203ENST00000461819 KRTAP12-3P60328 96 aa8.14□□□□□ -1.11
CCDC28B-203ENST00000461819 PP632Q6XCG6 107 aa8.14□□□□□ -1.11
CCDC28B-203ENST00000461819 ROMO1P60602 79 aa8.09□□□□□ -1.11
CCDC28B-203ENST00000461819 DSTQ03001 7570 aaKnown RBP8.05□□□□□ -1.12
CCDC28B-203ENST00000461819 MT1MQ8N339 61 aa8.04□□□□□ -1.12
CCDC28B-203ENST00000461819 KRTAP23-1A1A580 65 aa8.01□□□□□ -1.13
CCDC28B-203ENST00000461819 KRTAP4-3Q9BYR4 195 aa7.84□□□□□ -1.15
CCDC28B-203ENST00000461819 BRK1Q8WUW1 75 aa7.82□□□□□ -1.16
CCDC28B-203ENST00000461819 KRTAP4-7Q9BYR0 210 aa7.77□□□□□ -1.17
CCDC28B-203ENST00000461819 KRTAP15-1Q3LI76 137 aa7.73□□□□□ -1.17
CCDC28B-203ENST00000461819 KRTAP19-4Q3LI73 84 aa7.66□□□□□ -1.18
CCDC28B-203ENST00000461819 KRTAP4-9Q9BYQ8 210 aa7.54□□□□□ -1.2
CCDC28B-203ENST00000461819 LCE3CQ5T5A8 94 aa7.52□□□□□ -1.21
CCDC28B-203ENST00000461819 LCE4AQ5TA78 99 aa7.51□□□□□ -1.21
CCDC28B-203ENST00000461819 LCE1DQ5T752 114 aa7.42□□□□□ -1.22
CCDC28B-203ENST00000461819 MT4P47944 62 aa7.41□□□□□ -1.22
CCDC28B-203ENST00000461819 KRTAP5-4Q6L8H1 288 aa7.41□□□□□ -1.22
CCDC28B-203ENST00000461819 PMAIP1Q13794 54 aa7.36□□□□□ -1.23
CCDC28B-203ENST00000461819 LOC100996750A0A140TA64 210 aa7.35□□□□□ -1.23
CCDC28B-203ENST00000461819 SVIPQ8NHG7 77 aa7.32□□□□□ -1.24
CCDC28B-203ENST00000461819 HMCN1Q96RW7 5635 aa7.31□□□□□ -1.24
CCDC28B-203ENST00000461819 KRTAP5-5Q701N2 237 aaPredicted RBP7.3□□□□□ -1.24
CCDC28B-203ENST00000461819 KRTAP4-6Q9BYQ5 205 aa7.2□□□□□ -1.26
CCDC28B-203ENST00000461819 PRO0628Q9UI54 55 aa7.1□□□□□ -1.27
CCDC28B-203ENST00000461819 KRTAP12-4P60329 112 aa7.07□□□□□ -1.28
CCDC28B-203ENST00000461819 KRTAP9-6A8MVA2 160 aa7.06□□□□□ -1.28
CCDC28B-203ENST00000461819 GPR98Q8WXG9 6306 aa7.03□□□□□ -1.28
CCDC28B-203ENST00000461819 SPRR5A0A1B0GTR4 108 aa7□□□□□ -1.29
CCDC28B-203ENST00000461819 KRTAP20-2Q3LI61 65 aa7□□□□□ -1.29
CCDC28B-203ENST00000461819 PRAC1Q96KF2 57 aa7□□□□□ -1.29
CCDC28B-203ENST00000461819 SYNE1Q8NF91 8797 aaKnown RBP6.95□□□□□ -1.3
CCDC28B-203ENST00000461819 MT1AP04731 61 aa6.95□□□□□ -1.3
CCDC28B-203ENST00000461819 AHNAK2Q8IVF2 5795 aa6.94□□□□□ -1.3
CCDC28B-203ENST00000461819 KRTAP6-1Q3LI64 71 aa6.88□□□□□ -1.31
CCDC28B-203ENST00000461819 KRTAP5-3Q6L8H2 238 aa6.75□□□□□ -1.33
CCDC28B-203ENST00000461819 KTN1-AS1Q86SY8 53 aa6.73□□□□□ -1.33
CCDC28B-203ENST00000461819 KRTAP5-10Q6L8G5 202 aa6.67□□□□□ -1.34
CCDC28B-203ENST00000461819 KRTAP9-4Q9BYQ2 154 aa6.67□□□□□ -1.34
CCDC28B-203ENST00000461819 KRTAP5-2Q701N4 177 aa6.56□□□□□ -1.36
CCDC28B-203ENST00000461819 KRTAP6-2Q3LI66 62 aa6.51□□□□□ -1.37
CCDC28B-203ENST00000461819 KRTAP5-7Q6L8G8 165 aa6.36□□□□□ -1.39
CCDC28B-203ENST00000461819 MT3P25713 68 aa6.35□□□□□ -1.39
CCDC28B-203ENST00000461819 KRTAP4-11Q9BYQ6 195 aa6.29□□□□□ -1.4
CCDC28B-203ENST00000461819 OBSCNQ5VST9 7968 aa6.14□□□□□ -1.43
CCDC28B-203ENST00000461819 KRTAP5-8O75690 187 aa6.06□□□□□ -1.44
CCDC28B-203ENST00000461819 LUZP6Q538Z0 58 aa5.89□□□□□ -1.47
CCDC28B-203ENST00000461819 KRTAP5-1Q6L8H4 278 aa5.81□□□□□ -1.48
CCDC28B-203ENST00000461819 MUC5ACP98088 5654 aa5.72□□□□□ -1.49
CCDC28B-203ENST00000461819 LCE1EQ5T753 118 aa5.71□□□□□ -1.5
CCDC28B-203ENST00000461819 KRTAP9-9Q9BYP9 154 aa5.71□□□□□ -1.5
CCDC28B-203ENST00000461819 MUC5BQ9HC84 5762 aaPredicted RBP5.62□□□□□ -1.51
CCDC28B-203ENST00000461819 AHNAKQ09666 5890 aaKnown RBP5.59□□□□□ -1.51
CCDC28B-203ENST00000461819 LCE3DQ9BYE3 92 aa5.51□□□□□ -1.53
CCDC28B-203ENST00000461819 LCE1BQ5T7P3 118 aa5.4□□□□□ -1.54
CCDC28B-203ENST00000461819 KRTAP4-2Q9BYR5 136 aa5.35□□□□□ -1.55
CCDC28B-203ENST00000461819 LCE1CQ5T751 118 aa5.3□□□□□ -1.56
CCDC28B-203ENST00000461819 LCE3EQ5T5B0 92 aa5.24□□□□□ -1.57
CCDC28B-203ENST00000461819 NDUFAF8A1L188 74 aa5.05□□□□□ -1.6
CCDC28B-203ENST00000461819 H3BS24 57 aa4.97□□□□□ -1.61
CCDC28B-203ENST00000461819 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.86□□□□□ -1.63
CCDC28B-203ENST00000461819 KRTAP5-11Q6L8G4 156 aa4.77□□□□□ -1.65
CCDC28B-203ENST00000461819 KRTAP4-12Q9BQ66 201 aa4.75□□□□□ -1.65
CCDC28B-203ENST00000461819 LCE1FQ5T754 118 aa4.55□□□□□ -1.68
CCDC28B-203ENST00000461819 KRTAP21-2Q3LI59 83 aa4.51□□□□□ -1.69
CCDC28B-203ENST00000461819 A0A0A0MQY5 61 aa4.35□□□□□ -1.71
CCDC28B-203ENST00000461819 PRM1P04553 51 aa4.16□□□□□ -1.74
CCDC28B-203ENST00000461819 PHGR1C9JFL3 82 aa4.11□□□□□ -1.75
CCDC28B-203ENST00000461819 INE1O15225 51 aa4.11□□□□□ -1.75
CCDC28B-203ENST00000461819 KRTAP4-4Q9BYR3 166 aa4.11□□□□□ -1.75
CCDC28B-203ENST00000461819 MUC19Q7Z5P9 8384 aa3.75□□□□□ -1.81
CCDC28B-203ENST00000461819 KRTAP21-1Q3LI58 79 aa2.94□□□□□ -1.94
CCDC28B-203ENST00000461819 MUC16Q8WXI7 14507 aa2.66□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 272.2 ms