RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 KRTAP13-4Q3LI77 160 aa4.58□□□□□ -1.68
LMCD1-206ENST00000456506 SPATA8Q6RVD6 105 aa4.58□□□□□ -1.68
LMCD1-206ENST00000456506 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
LMCD1-206ENST00000456506 A6NED7 52 aa4.54□□□□□ -1.68
LMCD1-206ENST00000456506 MIR22HGQ0VDD5 57 aa4.53□□□□□ -1.68
LMCD1-206ENST00000456506 BRK1Q8WUW1 75 aa4.53□□□□□ -1.68
LMCD1-206ENST00000456506 KRTAP19-7Q3SYF9 63 aa4.52□□□□□ -1.69
LMCD1-206ENST00000456506 CDC42SE1Q9NRR8 79 aa4.51□□□□□ -1.69
LMCD1-206ENST00000456506 MT1EP04732 61 aa4.47□□□□□ -1.69
LMCD1-206ENST00000456506 KRTAP19-3Q7Z4W3 81 aa4.47□□□□□ -1.69
LMCD1-206ENST00000456506 A8MU10 97 aa4.45□□□□□ -1.7
LMCD1-206ENST00000456506 KRTAP12-1P59990 96 aa4.43□□□□□ -1.7
LMCD1-206ENST00000456506 HMCN1Q96RW7 5635 aa4.42□□□□□ -1.7
LMCD1-206ENST00000456506 A0A0D9SG42 100 aa4.41□□□□□ -1.7
LMCD1-206ENST00000456506 AHNAK2Q8IVF2 5795 aa4.37□□□□□ -1.71
LMCD1-206ENST00000456506 PMAIP1Q13794 54 aa4.35□□□□□ -1.71
LMCD1-206ENST00000456506 K7ERS5 55 aa4.34□□□□□ -1.71
LMCD1-206ENST00000456506 MT1GP13640 62 aa4.33□□□□□ -1.72
LMCD1-206ENST00000456506 MT4P47944 62 aa4.33□□□□□ -1.72
LMCD1-206ENST00000456506 SPINT4Q6UDR6 99 aa4.33□□□□□ -1.72
LMCD1-206ENST00000456506 KRTAP5-10Q6L8G5 202 aa4.32□□□□□ -1.72
LMCD1-206ENST00000456506 KRTAP5-4Q6L8H1 288 aa4.29□□□□□ -1.72
LMCD1-206ENST00000456506 KRTAP19-5Q3LI72 72 aa4.27□□□□□ -1.73
LMCD1-206ENST00000456506 MT1MQ8N339 61 aa4.27□□□□□ -1.73
LMCD1-206ENST00000456506 CAMK2N1Q7Z7J9 78 aa4.26□□□□□ -1.73
LMCD1-206ENST00000456506 KTN1-AS1Q86SY8 53 aa4.25□□□□□ -1.73
LMCD1-206ENST00000456506 PP632Q6XCG6 107 aa4.23□□□□□ -1.73
LMCD1-206ENST00000456506 MT1LQ93083 61 aa4.21□□□□□ -1.74
LMCD1-206ENST00000456506 KRTAP4-3Q9BYR4 195 aa4.2□□□□□ -1.74
LMCD1-206ENST00000456506 C10orf95Q9H7T3 257 aa4.19□□□□□ -1.74
LMCD1-206ENST00000456506 KRTAP5-7Q6L8G8 165 aa4.18□□□□□ -1.74
LMCD1-206ENST00000456506 ROMO1P60602 79 aa4.16□□□□□ -1.74
LMCD1-206ENST00000456506 KRTAP25-1Q3LHN0 102 aa4.1□□□□□ -1.75
LMCD1-206ENST00000456506 TNP1P09430 55 aa4.07□□□□□ -1.76
LMCD1-206ENST00000456506 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
LMCD1-206ENST00000456506 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
LMCD1-206ENST00000456506 LCE3AQ5TA76 89 aa4.03□□□□□ -1.76
LMCD1-206ENST00000456506 KRTAP5-5Q701N2 237 aaPredicted RBP3.99□□□□□ -1.77
LMCD1-206ENST00000456506 SPRR5A0A1B0GTR4 108 aa3.97□□□□□ -1.77
LMCD1-206ENST00000456506 SYNE1Q8NF91 8797 aaKnown RBP3.93□□□□□ -1.78
LMCD1-206ENST00000456506 KRTAP19-4Q3LI73 84 aa3.93□□□□□ -1.78
LMCD1-206ENST00000456506 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
LMCD1-206ENST00000456506 KRTAP12-3P60328 96 aa3.85□□□□□ -1.79
LMCD1-206ENST00000456506 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
LMCD1-206ENST00000456506 KRTAP5-2Q701N4 177 aa3.72□□□□□ -1.81
LMCD1-206ENST00000456506 KRTAP15-1Q3LI76 137 aa3.69□□□□□ -1.82
LMCD1-206ENST00000456506 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
LMCD1-206ENST00000456506 MUC5ACP98088 5654 aa3.67□□□□□ -1.82
LMCD1-206ENST00000456506 KRTAP5-8O75690 187 aa3.66□□□□□ -1.82
LMCD1-206ENST00000456506 AHNAKQ09666 5890 aaKnown RBP3.64□□□□□ -1.83
LMCD1-206ENST00000456506 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
LMCD1-206ENST00000456506 KRTAP6-1Q3LI64 71 aa3.59□□□□□ -1.83
LMCD1-206ENST00000456506 MT1AP04731 61 aa3.57□□□□□ -1.84
LMCD1-206ENST00000456506 OBSCNQ5VST9 7968 aa3.57□□□□□ -1.84
LMCD1-206ENST00000456506 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
LMCD1-206ENST00000456506 H3BS24 57 aa3.51□□□□□ -1.85
LMCD1-206ENST00000456506 KRTAP6-2Q3LI66 62 aa3.47□□□□□ -1.85
LMCD1-206ENST00000456506 KRTAP9-6A8MVA2 160 aa3.42□□□□□ -1.86
LMCD1-206ENST00000456506 KRTAP5-11Q6L8G4 156 aa3.39□□□□□ -1.87
LMCD1-206ENST00000456506 KRTAP5-1Q6L8H4 278 aa3.38□□□□□ -1.87
LMCD1-206ENST00000456506 A0A0A0MQY5 61 aa3.36□□□□□ -1.87
LMCD1-206ENST00000456506 NDUFAF8A1L188 74 aa3.34□□□□□ -1.87
LMCD1-206ENST00000456506 LUZP6Q538Z0 58 aa3.28□□□□□ -1.88
LMCD1-206ENST00000456506 MT3P25713 68 aa3.24□□□□□ -1.89
LMCD1-206ENST00000456506 LCE1EQ5T753 118 aa3.09□□□□□ -1.91
LMCD1-206ENST00000456506 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
LMCD1-206ENST00000456506 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
LMCD1-206ENST00000456506 INE1O15225 51 aa2.87□□□□□ -1.95
LMCD1-206ENST00000456506 LCE1CQ5T751 118 aa2.87□□□□□ -1.95
LMCD1-206ENST00000456506 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
LMCD1-206ENST00000456506 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
LMCD1-206ENST00000456506 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
LMCD1-206ENST00000456506 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
LMCD1-206ENST00000456506 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
LMCD1-206ENST00000456506 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
LMCD1-206ENST00000456506 PRM1P04553 51 aa2.13□□□□□ -2.07
LMCD1-206ENST00000456506 KRTAP21-1Q3LI58 79 aa1.87□□□□□ -2.11
LMCD1-206ENST00000456506 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 206.7 ms