RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 LCE3BQ5TA77 95 aa6.03□□□□□ -1.44
SF3A1-204ENST00000447376 LCE3AQ5TA76 89 aa6.02□□□□□ -1.45
SF3A1-204ENST00000447376 KRTAP19-3Q7Z4W3 81 aa6.01□□□□□ -1.45
SF3A1-204ENST00000447376 LCE5AQ5TCM9 118 aa5.97□□□□□ -1.45
SF3A1-204ENST00000447376 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
SF3A1-204ENST00000447376 MT1GP13640 62 aa5.91□□□□□ -1.46
SF3A1-204ENST00000447376 ROMO1P60602 79 aa5.89□□□□□ -1.47
SF3A1-204ENST00000447376 DSTQ03001 7570 aaKnown RBP5.86□□□□□ -1.47
SF3A1-204ENST00000447376 KRTAP23-1A1A580 65 aa5.84□□□□□ -1.47
SF3A1-204ENST00000447376 KRTAP12-3P60328 96 aa5.83□□□□□ -1.48
SF3A1-204ENST00000447376 MT1LQ93083 61 aa5.82□□□□□ -1.48
SF3A1-204ENST00000447376 MT1MQ8N339 61 aa5.77□□□□□ -1.49
SF3A1-204ENST00000447376 BRK1Q8WUW1 75 aa5.77□□□□□ -1.49
SF3A1-204ENST00000447376 KRTAP19-4Q3LI73 84 aa5.6□□□□□ -1.51
SF3A1-204ENST00000447376 KRTAP4-3Q9BYR4 195 aa5.57□□□□□ -1.52
SF3A1-204ENST00000447376 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
SF3A1-204ENST00000447376 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
SF3A1-204ENST00000447376 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
SF3A1-204ENST00000447376 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
SF3A1-204ENST00000447376 PMAIP1Q13794 54 aa5.46□□□□□ -1.54
SF3A1-204ENST00000447376 LCE1DQ5T752 114 aa5.43□□□□□ -1.54
SF3A1-204ENST00000447376 MT4P47944 62 aa5.41□□□□□ -1.54
SF3A1-204ENST00000447376 LCE3CQ5T5A8 94 aa5.39□□□□□ -1.55
SF3A1-204ENST00000447376 KRTAP5-4Q6L8H1 288 aa5.37□□□□□ -1.55
SF3A1-204ENST00000447376 HMCN1Q96RW7 5635 aa5.34□□□□□ -1.55
SF3A1-204ENST00000447376 PRO0628Q9UI54 55 aa5.31□□□□□ -1.56
SF3A1-204ENST00000447376 GPR98Q8WXG9 6306 aa5.28□□□□□ -1.56
SF3A1-204ENST00000447376 KRTAP5-5Q701N2 237 aaPredicted RBP5.23□□□□□ -1.57
SF3A1-204ENST00000447376 KRTAP4-6Q9BYQ5 205 aa5.22□□□□□ -1.57
SF3A1-204ENST00000447376 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
SF3A1-204ENST00000447376 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
SF3A1-204ENST00000447376 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
SF3A1-204ENST00000447376 PRAC1Q96KF2 57 aa5.1□□□□□ -1.59
SF3A1-204ENST00000447376 AHNAK2Q8IVF2 5795 aa5.1□□□□□ -1.59
SF3A1-204ENST00000447376 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
SF3A1-204ENST00000447376 SYNE1Q8NF91 8797 aaKnown RBP5.01□□□□□ -1.61
SF3A1-204ENST00000447376 KTN1-AS1Q86SY8 53 aa5.01□□□□□ -1.61
SF3A1-204ENST00000447376 KRTAP9-6A8MVA2 160 aa5□□□□□ -1.61
SF3A1-204ENST00000447376 MT1AP04731 61 aa4.98□□□□□ -1.61
SF3A1-204ENST00000447376 KRTAP5-10Q6L8G5 202 aa4.92□□□□□ -1.62
SF3A1-204ENST00000447376 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.63
SF3A1-204ENST00000447376 KRTAP5-3Q6L8H2 238 aa4.89□□□□□ -1.63
SF3A1-204ENST00000447376 KRTAP9-4Q9BYQ2 154 aa4.79□□□□□ -1.64
SF3A1-204ENST00000447376 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
SF3A1-204ENST00000447376 KRTAP5-7Q6L8G8 165 aa4.73□□□□□ -1.65
SF3A1-204ENST00000447376 KRTAP5-2Q701N4 177 aa4.72□□□□□ -1.65
SF3A1-204ENST00000447376 KRTAP6-2Q3LI66 62 aa4.68□□□□□ -1.66
SF3A1-204ENST00000447376 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
SF3A1-204ENST00000447376 MT3P25713 68 aa4.59□□□□□ -1.67
SF3A1-204ENST00000447376 OBSCNQ5VST9 7968 aa4.49□□□□□ -1.69
SF3A1-204ENST00000447376 KRTAP5-8O75690 187 aa4.42□□□□□ -1.7
SF3A1-204ENST00000447376 LUZP6Q538Z0 58 aa4.39□□□□□ -1.71
SF3A1-204ENST00000447376 KRTAP9-9Q9BYP9 154 aa4.25□□□□□ -1.73
SF3A1-204ENST00000447376 H3BS24 57 aa4.24□□□□□ -1.73
SF3A1-204ENST00000447376 KRTAP5-1Q6L8H4 278 aa4.2□□□□□ -1.74
SF3A1-204ENST00000447376 AHNAKQ09666 5890 aaKnown RBP4.19□□□□□ -1.74
SF3A1-204ENST00000447376 MUC5BQ9HC84 5762 aaPredicted RBP4.17□□□□□ -1.74
SF3A1-204ENST00000447376 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
SF3A1-204ENST00000447376 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
SF3A1-204ENST00000447376 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
SF3A1-204ENST00000447376 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
SF3A1-204ENST00000447376 LCE1CQ5T751 118 aa3.84□□□□□ -1.79
SF3A1-204ENST00000447376 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
SF3A1-204ENST00000447376 LCE3EQ5T5B0 92 aa3.79□□□□□ -1.8
SF3A1-204ENST00000447376 NDUFAF8A1L188 74 aa3.75□□□□□ -1.81
SF3A1-204ENST00000447376 KRTAP4-12Q9BQ66 201 aa3.53□□□□□ -1.84
SF3A1-204ENST00000447376 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
SF3A1-204ENST00000447376 KRTAP5-11Q6L8G4 156 aa3.46□□□□□ -1.86
SF3A1-204ENST00000447376 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
SF3A1-204ENST00000447376 A0A0A0MQY5 61 aa3.21□□□□□ -1.9
SF3A1-204ENST00000447376 KRTAP21-2Q3LI59 83 aa3.21□□□□□ -1.9
SF3A1-204ENST00000447376 INE1O15225 51 aa3.13□□□□□ -1.91
SF3A1-204ENST00000447376 PRM1P04553 51 aa3.01□□□□□ -1.93
SF3A1-204ENST00000447376 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
SF3A1-204ENST00000447376 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
SF3A1-204ENST00000447376 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
SF3A1-204ENST00000447376 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
SF3A1-204ENST00000447376 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 163.1 ms