RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 LCE3BQ5TA77 95 aa6.5□□□□□ -1.37
LIME1-202ENST00000444951 KRTAP19-5Q3LI72 72 aa6.42□□□□□ -1.38
LIME1-202ENST00000444951 KRTAP19-7Q3SYF9 63 aa6.39□□□□□ -1.39
LIME1-202ENST00000444951 PMAIP1Q13794 54 aa6.36□□□□□ -1.39
LIME1-202ENST00000444951 GPR98Q8WXG9 6306 aa6.35□□□□□ -1.39
LIME1-202ENST00000444951 MT1EP04732 61 aa6.32□□□□□ -1.4
LIME1-202ENST00000444951 PRO0628Q9UI54 55 aa6.31□□□□□ -1.4
LIME1-202ENST00000444951 DSTQ03001 7570 aaKnown RBP6.3□□□□□ -1.4
LIME1-202ENST00000444951 KRTAP23-1A1A580 65 aa6.28□□□□□ -1.4
LIME1-202ENST00000444951 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
LIME1-202ENST00000444951 PP632Q6XCG6 107 aa6.21□□□□□ -1.42
LIME1-202ENST00000444951 LCE5AQ5TCM9 118 aa6.19□□□□□ -1.42
LIME1-202ENST00000444951 KRTAP19-3Q7Z4W3 81 aa6.16□□□□□ -1.42
LIME1-202ENST00000444951 KRTAP4-9Q9BYQ8 210 aa6.16□□□□□ -1.42
LIME1-202ENST00000444951 MT1LQ93083 61 aa6.14□□□□□ -1.43
LIME1-202ENST00000444951 MT1GP13640 62 aa6.06□□□□□ -1.44
LIME1-202ENST00000444951 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
LIME1-202ENST00000444951 KRTAP15-1Q3LI76 137 aa6.02□□□□□ -1.45
LIME1-202ENST00000444951 HMCN1Q96RW7 5635 aa5.99□□□□□ -1.45
LIME1-202ENST00000444951 MT1MQ8N339 61 aa5.99□□□□□ -1.45
LIME1-202ENST00000444951 LCE1DQ5T752 114 aa5.97□□□□□ -1.45
LIME1-202ENST00000444951 AHNAK2Q8IVF2 5795 aa5.95□□□□□ -1.46
LIME1-202ENST00000444951 KTN1-AS1Q86SY8 53 aa5.92□□□□□ -1.46
LIME1-202ENST00000444951 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
LIME1-202ENST00000444951 KRTAP4-3Q9BYR4 195 aa5.9□□□□□ -1.46
LIME1-202ENST00000444951 MT4P47944 62 aa5.87□□□□□ -1.47
LIME1-202ENST00000444951 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
LIME1-202ENST00000444951 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
LIME1-202ENST00000444951 LCE3CQ5T5A8 94 aa5.81□□□□□ -1.48
LIME1-202ENST00000444951 KRTAP5-4Q6L8H1 288 aa5.73□□□□□ -1.49
LIME1-202ENST00000444951 KRTAP4-6Q9BYQ5 205 aa5.7□□□□□ -1.5
LIME1-202ENST00000444951 SVIPQ8NHG7 77 aa5.69□□□□□ -1.5
LIME1-202ENST00000444951 KRTAP5-10Q6L8G5 202 aa5.67□□□□□ -1.5
LIME1-202ENST00000444951 LOC100996750A0A140TA64 210 aa5.59□□□□□ -1.51
LIME1-202ENST00000444951 KRTAP9-6A8MVA2 160 aa5.48□□□□□ -1.53
LIME1-202ENST00000444951 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
LIME1-202ENST00000444951 KRTAP5-7Q6L8G8 165 aa5.46□□□□□ -1.54
LIME1-202ENST00000444951 KRTAP20-2Q3LI61 65 aa5.43□□□□□ -1.54
LIME1-202ENST00000444951 KRTAP5-5Q701N2 237 aaPredicted RBP5.42□□□□□ -1.54
LIME1-202ENST00000444951 SYNE1Q8NF91 8797 aaKnown RBP5.39□□□□□ -1.55
LIME1-202ENST00000444951 SPRR5A0A1B0GTR4 108 aa5.33□□□□□ -1.56
LIME1-202ENST00000444951 KRTAP12-4P60329 112 aa5.25□□□□□ -1.57
LIME1-202ENST00000444951 MT1AP04731 61 aa5.21□□□□□ -1.58
LIME1-202ENST00000444951 KRTAP6-1Q3LI64 71 aa5.18□□□□□ -1.58
LIME1-202ENST00000444951 KRTAP4-11Q9BYQ6 195 aa5.01□□□□□ -1.61
LIME1-202ENST00000444951 KRTAP5-2Q701N4 177 aa4.99□□□□□ -1.61
LIME1-202ENST00000444951 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
LIME1-202ENST00000444951 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
LIME1-202ENST00000444951 AHNAKQ09666 5890 aaKnown RBP4.96□□□□□ -1.62
LIME1-202ENST00000444951 MUC5BQ9HC84 5762 aaPredicted RBP4.9□□□□□ -1.62
LIME1-202ENST00000444951 KRTAP6-2Q3LI66 62 aa4.87□□□□□ -1.63
LIME1-202ENST00000444951 KRTAP5-8O75690 187 aa4.86□□□□□ -1.63
LIME1-202ENST00000444951 MUC5ACP98088 5654 aa4.86□□□□□ -1.63
LIME1-202ENST00000444951 OBSCNQ5VST9 7968 aa4.8□□□□□ -1.64
LIME1-202ENST00000444951 MT3P25713 68 aa4.75□□□□□ -1.65
LIME1-202ENST00000444951 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
LIME1-202ENST00000444951 NDUFAF8A1L188 74 aa4.55□□□□□ -1.68
LIME1-202ENST00000444951 KRTAP5-1Q6L8H4 278 aa4.52□□□□□ -1.69
LIME1-202ENST00000444951 LCE3DQ9BYE3 92 aa4.3□□□□□ -1.72
LIME1-202ENST00000444951 LCE1EQ5T753 118 aa4.18□□□□□ -1.74
LIME1-202ENST00000444951 LCE3EQ5T5B0 92 aa4.13□□□□□ -1.75
LIME1-202ENST00000444951 KRTAP4-2Q9BYR5 136 aa4.05□□□□□ -1.76
LIME1-202ENST00000444951 LCE1BQ5T7P3 118 aa4.03□□□□□ -1.76
LIME1-202ENST00000444951 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
LIME1-202ENST00000444951 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
LIME1-202ENST00000444951 KRTAP4-12Q9BQ66 201 aa3.78□□□□□ -1.8
LIME1-202ENST00000444951 INE1O15225 51 aa3.68□□□□□ -1.82
LIME1-202ENST00000444951 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
LIME1-202ENST00000444951 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
LIME1-202ENST00000444951 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
LIME1-202ENST00000444951 PRM1P04553 51 aa3.43□□□□□ -1.86
LIME1-202ENST00000444951 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
LIME1-202ENST00000444951 PHGR1C9JFL3 82 aa3.29□□□□□ -1.88
LIME1-202ENST00000444951 H3BS24 57 aa3.25□□□□□ -1.89
LIME1-202ENST00000444951 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
LIME1-202ENST00000444951 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
LIME1-202ENST00000444951 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
LIME1-202ENST00000444951 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 82.8 ms