RNA–Protein interactions for RNA: ENST00000440083.6

TNFRSF1A-204, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,034 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-204ENST00000440083 LCE1DQ5T752 114 aa5.71□□□□□ -1.5
TNFRSF1A-204ENST00000440083 LCE3AQ5TA76 89 aa5.7□□□□□ -1.5
TNFRSF1A-204ENST00000440083 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
TNFRSF1A-204ENST00000440083 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
TNFRSF1A-204ENST00000440083 MDN1Q9NU22 5596 aa5.63□□□□□ -1.51
TNFRSF1A-204ENST00000440083 SPRR2FQ96RM1 72 aa5.63□□□□□ -1.51
TNFRSF1A-204ENST00000440083 LCE4AQ5TA78 99 aa5.62□□□□□ -1.51
TNFRSF1A-204ENST00000440083 H3BS24 57 aa5.59□□□□□ -1.51
TNFRSF1A-204ENST00000440083 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
TNFRSF1A-204ENST00000440083 KRTAP4-9Q9BYQ8 210 aa5.54□□□□□ -1.52
TNFRSF1A-204ENST00000440083 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
TNFRSF1A-204ENST00000440083 SPRR2EP22531 72 aa5.49□□□□□ -1.53
TNFRSF1A-204ENST00000440083 SPRR2BP35325 72 aa5.49□□□□□ -1.53
TNFRSF1A-204ENST00000440083 SPRR2AP35326 72 aa5.49□□□□□ -1.53
TNFRSF1A-204ENST00000440083 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
TNFRSF1A-204ENST00000440083 KRTAP12-3P60328 96 aa5.48□□□□□ -1.53
TNFRSF1A-204ENST00000440083 LCE1AQ5T7P2 110 aa5.46□□□□□ -1.54
TNFRSF1A-204ENST00000440083 KRTAP15-1Q3LI76 137 aa5.44□□□□□ -1.54
TNFRSF1A-204ENST00000440083 KRTAP4-2Q9BYR5 136 aa5.43□□□□□ -1.54
TNFRSF1A-204ENST00000440083 KRTAP19-5Q3LI72 72 aa5.4□□□□□ -1.54
TNFRSF1A-204ENST00000440083 KRTAP19-7Q3SYF9 63 aa5.39□□□□□ -1.55
TNFRSF1A-204ENST00000440083 KRTAP4-11Q9BYQ6 195 aa5.35□□□□□ -1.55
TNFRSF1A-204ENST00000440083 MT1EP04732 61 aa5.33□□□□□ -1.56
TNFRSF1A-204ENST00000440083 KRTAP2-2Q9BYT5 123 aa5.33□□□□□ -1.56
TNFRSF1A-204ENST00000440083 KRTAP2-1Q9BYU5 128 aa5.33□□□□□ -1.56
TNFRSF1A-204ENST00000440083 SPRR2DP22532 72 aa5.3□□□□□ -1.56
TNFRSF1A-204ENST00000440083 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
TNFRSF1A-204ENST00000440083 SPRR5A0A1B0GTR4 108 aa5.21□□□□□ -1.58
TNFRSF1A-204ENST00000440083 LUZP6Q538Z0 58 aa5.21□□□□□ -1.58
TNFRSF1A-204ENST00000440083 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
TNFRSF1A-204ENST00000440083 GPR98Q8WXG9 6306 aa5.2□□□□□ -1.58
TNFRSF1A-204ENST00000440083 MT1LQ93083 61 aa5.14□□□□□ -1.59
TNFRSF1A-204ENST00000440083 NDUFAF8A1L188 74 aa5.11□□□□□ -1.59
TNFRSF1A-204ENST00000440083 LCE3CQ5T5A8 94 aa5.11□□□□□ -1.59
TNFRSF1A-204ENST00000440083 MT1GP13640 62 aa5.07□□□□□ -1.6
TNFRSF1A-204ENST00000440083 MT1MQ8N339 61 aa5.05□□□□□ -1.6
TNFRSF1A-204ENST00000440083 KRTAP4-3Q9BYR4 195 aa4.99□□□□□ -1.61
TNFRSF1A-204ENST00000440083 DSTQ03001 7570 aaKnown RBP4.99□□□□□ -1.61
TNFRSF1A-204ENST00000440083 KRTAP5-3Q6L8H2 238 aa4.79□□□□□ -1.64
TNFRSF1A-204ENST00000440083 KRTAP9-6A8MVA2 160 aa4.77□□□□□ -1.65
TNFRSF1A-204ENST00000440083 MT4P47944 62 aa4.65□□□□□ -1.67
TNFRSF1A-204ENST00000440083 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.67
TNFRSF1A-204ENST00000440083 HMCN1Q96RW7 5635 aa4.62□□□□□ -1.67
TNFRSF1A-204ENST00000440083 KRTAP5-5Q701N2 237 aaPredicted RBP4.6□□□□□ -1.67
TNFRSF1A-204ENST00000440083 A0A0A0MQY5 61 aa4.58□□□□□ -1.68
TNFRSF1A-204ENST00000440083 KRTAP5-10Q6L8G5 202 aa4.55□□□□□ -1.68
TNFRSF1A-204ENST00000440083 AHNAK2Q8IVF2 5795 aa4.53□□□□□ -1.68
TNFRSF1A-204ENST00000440083 KRTAP5-7Q6L8G8 165 aa4.47□□□□□ -1.69
TNFRSF1A-204ENST00000440083 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
TNFRSF1A-204ENST00000440083 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
TNFRSF1A-204ENST00000440083 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
TNFRSF1A-204ENST00000440083 MT1AP04731 61 aa4.36□□□□□ -1.71
TNFRSF1A-204ENST00000440083 KRTAP6-1Q3LI64 71 aa4.34□□□□□ -1.71
TNFRSF1A-204ENST00000440083 INE1O15225 51 aa4.24□□□□□ -1.73
TNFRSF1A-204ENST00000440083 KRTAP5-2Q701N4 177 aa4.12□□□□□ -1.75
TNFRSF1A-204ENST00000440083 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
TNFRSF1A-204ENST00000440083 MT3P25713 68 aa3.96□□□□□ -1.78
TNFRSF1A-204ENST00000440083 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
TNFRSF1A-204ENST00000440083 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
TNFRSF1A-204ENST00000440083 MUC5ACP98088 5654 aa3.86□□□□□ -1.79
TNFRSF1A-204ENST00000440083 MUC5BQ9HC84 5762 aaPredicted RBP3.81□□□□□ -1.8
TNFRSF1A-204ENST00000440083 KRTAP5-8O75690 187 aa3.8□□□□□ -1.8
TNFRSF1A-204ENST00000440083 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
TNFRSF1A-204ENST00000440083 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
TNFRSF1A-204ENST00000440083 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
TNFRSF1A-204ENST00000440083 KRTAP5-11Q6L8G4 156 aa3.62□□□□□ -1.83
TNFRSF1A-204ENST00000440083 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
TNFRSF1A-204ENST00000440083 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
TNFRSF1A-204ENST00000440083 LCE1BQ5T7P3 118 aa3.39□□□□□ -1.87
TNFRSF1A-204ENST00000440083 PRM1P04553 51 aa3.35□□□□□ -1.87
TNFRSF1A-204ENST00000440083 LCE1CQ5T751 118 aa3.29□□□□□ -1.88
TNFRSF1A-204ENST00000440083 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
TNFRSF1A-204ENST00000440083 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
TNFRSF1A-204ENST00000440083 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
TNFRSF1A-204ENST00000440083 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
TNFRSF1A-204ENST00000440083 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
TNFRSF1A-204ENST00000440083 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
TNFRSF1A-204ENST00000440083 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 7.7 ms