RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 MT1FP04733 61 aa3.01□□□□□ -1.93
COL28A1-202ENST00000430711 MT1HP80294 61 aa3□□□□□ -1.93
COL28A1-202ENST00000430711 NEBP20929 6669 aa2.99□□□□□ -1.93
COL28A1-202ENST00000430711 SYNE2Q8WXH0 6885 aaKnown RBP2.98□□□□□ -1.93
COL28A1-202ENST00000430711 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
COL28A1-202ENST00000430711 SPRR2GQ9BYE4 73 aa2.98□□□□□ -1.93
COL28A1-202ENST00000430711 MT2AP02795 61 aa2.97□□□□□ -1.93
COL28A1-202ENST00000430711 TNP1P09430 55 aa2.97□□□□□ -1.93
COL28A1-202ENST00000430711 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
COL28A1-202ENST00000430711 LCE3AQ5TA76 89 aa2.97□□□□□ -1.93
COL28A1-202ENST00000430711 PP632Q6XCG6 107 aa2.97□□□□□ -1.93
COL28A1-202ENST00000430711 MACF1Q9UPN3 7388 aaKnown RBP2.95□□□□□ -1.94
COL28A1-202ENST00000430711 M0R2T5 61 aa2.94□□□□□ -1.94
COL28A1-202ENST00000430711 SPRR5A0A1B0GTR4 108 aa2.93□□□□□ -1.94
COL28A1-202ENST00000430711 KMT2DO14686 5537 aa2.92□□□□□ -1.94
COL28A1-202ENST00000430711 KRTAP10-10P60014 251 aa2.92□□□□□ -1.94
COL28A1-202ENST00000430711 LCE1EQ5T753 118 aa2.91□□□□□ -1.94
COL28A1-202ENST00000430711 MT1BP07438 61 aa2.9□□□□□ -1.95
COL28A1-202ENST00000430711 KRTAP10-5P60370 271 aa2.89□□□□□ -1.95
COL28A1-202ENST00000430711 LUZP6Q538Z0 58 aa2.89□□□□□ -1.95
COL28A1-202ENST00000430711 MT1XP80297 61 aa2.88□□□□□ -1.95
COL28A1-202ENST00000430711 KRTAP4-3Q9BYR4 195 aa2.88□□□□□ -1.95
COL28A1-202ENST00000430711 KRTAP19-8Q3LI54 63 aa2.84□□□□□ -1.95
COL28A1-202ENST00000430711 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
COL28A1-202ENST00000430711 KRTAP2-3P0C7H8 128 aa2.82□□□□□ -1.96
COL28A1-202ENST00000430711 KRTAP2-4Q9BYR9 128 aa2.82□□□□□ -1.96
COL28A1-202ENST00000430711 KRTAP19-6Q3LI70 58 aa2.8□□□□□ -1.96
COL28A1-202ENST00000430711 KRTAP8-1Q8IUC2 63 aa2.8□□□□□ -1.96
COL28A1-202ENST00000430711 KRTAP10-12P60413 245 aa2.76□□□□□ -1.97
COL28A1-202ENST00000430711 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
COL28A1-202ENST00000430711 KRTAP12-3P60328 96 aa2.75□□□□□ -1.97
COL28A1-202ENST00000430711 MUC12Q9UKN1 5478 aa2.74□□□□□ -1.97
COL28A1-202ENST00000430711 KRTAP19-5Q3LI72 72 aa2.7□□□□□ -1.98
COL28A1-202ENST00000430711 KRTAP2-1Q9BYU5 128 aa2.69□□□□□ -1.98
COL28A1-202ENST00000430711 KRTAP9-6A8MVA2 160 aa2.67□□□□□ -1.98
COL28A1-202ENST00000430711 LCE1FQ5T754 118 aa2.6□□□□□ -1.99
COL28A1-202ENST00000430711 MDN1Q9NU22 5596 aa2.6□□□□□ -1.99
COL28A1-202ENST00000430711 LCE3CQ5T5A8 94 aa2.59□□□□□ -1.99
COL28A1-202ENST00000430711 KRTAP19-7Q3SYF9 63 aa2.58□□□□□ -2
COL28A1-202ENST00000430711 MT3P25713 68 aa2.55□□□□□ -2
COL28A1-202ENST00000430711 PRO2289Q9P1D8 64 aa2.55□□□□□ -2
COL28A1-202ENST00000430711 SPRR2EP22531 72 aa2.5□□□□□ -2.01
COL28A1-202ENST00000430711 SPRR2BP35325 72 aa2.5□□□□□ -2.01
COL28A1-202ENST00000430711 SPRR2AP35326 72 aa2.5□□□□□ -2.01
COL28A1-202ENST00000430711 OBSCNQ5VST9 7968 aa2.48□□□□□ -2.01
COL28A1-202ENST00000430711 MT1LQ93083 61 aa2.47□□□□□ -2.01
COL28A1-202ENST00000430711 INE1O15225 51 aa2.46□□□□□ -2.02
COL28A1-202ENST00000430711 MT1EP04732 61 aa2.46□□□□□ -2.02
COL28A1-202ENST00000430711 DSTQ03001 7570 aaKnown RBP2.45□□□□□ -2.02
COL28A1-202ENST00000430711 AHNAK2Q8IVF2 5795 aa2.43□□□□□ -2.02
COL28A1-202ENST00000430711 SPRR2DP22532 72 aa2.43□□□□□ -2.02
COL28A1-202ENST00000430711 KRTAP5-7Q6L8G8 165 aa2.42□□□□□ -2.02
COL28A1-202ENST00000430711 KRTAP5-10Q6L8G5 202 aa2.41□□□□□ -2.02
COL28A1-202ENST00000430711 SPRR2FQ96RM1 72 aa2.38□□□□□ -2.03
COL28A1-202ENST00000430711 MT1GP13640 62 aa2.37□□□□□ -2.03
COL28A1-202ENST00000430711 SYNE1Q8NF91 8797 aaKnown RBP2.32□□□□□ -2.04
COL28A1-202ENST00000430711 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
COL28A1-202ENST00000430711 MT1MQ8N339 61 aa2.3□□□□□ -2.04
COL28A1-202ENST00000430711 LCE3EQ5T5B0 92 aa2.27□□□□□ -2.05
COL28A1-202ENST00000430711 KRTAP19-3Q7Z4W3 81 aa2.26□□□□□ -2.05
COL28A1-202ENST00000430711 AHNAKQ09666 5890 aaKnown RBP2.24□□□□□ -2.05
COL28A1-202ENST00000430711 KRTAP12-4P60329 112 aa2.18□□□□□ -2.06
COL28A1-202ENST00000430711 KRTAP6-1Q3LI64 71 aa2.16□□□□□ -2.06
COL28A1-202ENST00000430711 MT4P47944 62 aa2.12□□□□□ -2.07
COL28A1-202ENST00000430711 MUC5ACP98088 5654 aa2.07□□□□□ -2.08
COL28A1-202ENST00000430711 KRTAP5-5Q701N2 237 aaPredicted RBP2.05□□□□□ -2.08
COL28A1-202ENST00000430711 MT1AP04731 61 aa2.02□□□□□ -2.09
COL28A1-202ENST00000430711 LCE3DQ9BYE3 92 aa1.99□□□□□ -2.09
COL28A1-202ENST00000430711 PRM1P04553 51 aa1.97□□□□□ -2.09
COL28A1-202ENST00000430711 KRTAP20-2Q3LI61 65 aa1.91□□□□□ -2.1
COL28A1-202ENST00000430711 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
COL28A1-202ENST00000430711 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
COL28A1-202ENST00000430711 LCE1BQ5T7P3 118 aa1.74□□□□□ -2.13
COL28A1-202ENST00000430711 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.18
COL28A1-202ENST00000430711 PHGR1C9JFL3 82 aa1.4□□□□□ -2.19
COL28A1-202ENST00000430711 KRTAP21-2Q3LI59 83 aa1.37□□□□□ -2.19
COL28A1-202ENST00000430711 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
COL28A1-202ENST00000430711 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 88.5 ms