RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 MT1HP80294 61 aa1.91□□□□□ -2.1
HMGB3-203ENST00000430118 H1FX-AS1Q4G0G2 97 aa1.89□□□□□ -2.11
HMGB3-203ENST00000430118 MUC12Q9UKN1 5478 aa1.86□□□□□ -2.11
HMGB3-203ENST00000430118 SPINK1P00995 79 aa1.86□□□□□ -2.11
HMGB3-203ENST00000430118 CRIPTQ9P021 101 aa1.86□□□□□ -2.11
HMGB3-203ENST00000430118 RPL37P61927 97 aaKnown RBP1.85□□□□□ -2.11
HMGB3-203ENST00000430118 RPS29P62273 56 aaKnown RBP1.85□□□□□ -2.11
HMGB3-203ENST00000430118 KRTAP4-1Q9BYQ7 146 aa1.85□□□□□ -2.11
HMGB3-203ENST00000430118 NEBP20929 6669 aa1.84□□□□□ -2.11
HMGB3-203ENST00000430118 FLGP20930 4061 aaPredicted RBP1.83□□□□□ -2.12
HMGB3-203ENST00000430118 KRTAP19-2Q3LHN2 52 aa1.83□□□□□ -2.12
HMGB3-203ENST00000430118 PP632Q6XCG6 107 aa1.83□□□□□ -2.12
HMGB3-203ENST00000430118 PRLHP81277 87 aa1.82□□□□□ -2.12
HMGB3-203ENST00000430118 PLAC4Q8WY50 150 aa1.82□□□□□ -2.12
HMGB3-203ENST00000430118 KRTAP6-3Q3LI67 103 aa1.81□□□□□ -2.12
HMGB3-203ENST00000430118 KRTAP13-1Q8IUC0 172 aa1.81□□□□□ -2.12
HMGB3-203ENST00000430118 KRTAP20-1Q3LI63 56 aa1.8□□□□□ -2.12
HMGB3-203ENST00000430118 KRTAP5-5Q701N2 237 aaPredicted RBP1.8□□□□□ -2.12
HMGB3-203ENST00000430118 MDN1Q9NU22 5596 aa1.79□□□□□ -2.12
HMGB3-203ENST00000430118 C9orf92A6NGG3 77 aa1.78□□□□□ -2.12
HMGB3-203ENST00000430118 INE1O15225 51 aa1.78□□□□□ -2.12
HMGB3-203ENST00000430118 C10orf95Q9H7T3 257 aa1.77□□□□□ -2.13
HMGB3-203ENST00000430118 KRTAP19-6Q3LI70 58 aa1.74□□□□□ -2.13
HMGB3-203ENST00000430118 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
HMGB3-203ENST00000430118 LCE1BQ5T7P3 118 aa1.74□□□□□ -2.13
HMGB3-203ENST00000430118 S4R3F8 94 aa1.74□□□□□ -2.13
HMGB3-203ENST00000430118 KRTAP13-4Q3LI77 160 aa1.73□□□□□ -2.13
HMGB3-203ENST00000430118 MT2AP02795 61 aa1.71□□□□□ -2.14
HMGB3-203ENST00000430118 KMT2DO14686 5537 aa1.7□□□□□ -2.14
HMGB3-203ENST00000430118 MT1FP04733 61 aa1.69□□□□□ -2.14
HMGB3-203ENST00000430118 KRTAP2-3P0C7H8 128 aa1.69□□□□□ -2.14
HMGB3-203ENST00000430118 KRTAP2-4Q9BYR9 128 aa1.69□□□□□ -2.14
HMGB3-203ENST00000430118 GPR98Q8WXG9 6306 aa1.67□□□□□ -2.14
HMGB3-203ENST00000430118 KRTAP12-1P59990 96 aa1.67□□□□□ -2.14
HMGB3-203ENST00000430118 A0A0D9SG42 100 aa1.64□□□□□ -2.15
HMGB3-203ENST00000430118 M0QZ58 72 aa1.64□□□□□ -2.15
HMGB3-203ENST00000430118 KRTAP2-1Q9BYU5 128 aa1.63□□□□□ -2.15
HMGB3-203ENST00000430118 KRTAP5-8O75690 187 aa1.61□□□□□ -2.15
HMGB3-203ENST00000430118 KRTAP12-3P60328 96 aa1.61□□□□□ -2.15
HMGB3-203ENST00000430118 SPRR2EP22531 72 aa1.59□□□□□ -2.15
HMGB3-203ENST00000430118 SPRR2BP35325 72 aa1.59□□□□□ -2.15
HMGB3-203ENST00000430118 SPRR2AP35326 72 aa1.59□□□□□ -2.15
HMGB3-203ENST00000430118 SPRR2FQ96RM1 72 aa1.57□□□□□ -2.16
HMGB3-203ENST00000430118 KRTAP12-4P60329 112 aa1.56□□□□□ -2.16
HMGB3-203ENST00000430118 SPRR2DP22532 72 aa1.55□□□□□ -2.16
HMGB3-203ENST00000430118 DSTQ03001 7570 aaKnown RBP1.54□□□□□ -2.16
HMGB3-203ENST00000430118 KRTAP8-1Q8IUC2 63 aa1.5□□□□□ -2.17
HMGB3-203ENST00000430118 MT1BP07438 61 aa1.48□□□□□ -2.17
HMGB3-203ENST00000430118 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
HMGB3-203ENST00000430118 KRTAP19-8Q3LI54 63 aa1.47□□□□□ -2.17
HMGB3-203ENST00000430118 SPRR2GQ9BYE4 73 aa1.47□□□□□ -2.17
HMGB3-203ENST00000430118 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
HMGB3-203ENST00000430118 TNP1P09430 55 aa1.46□□□□□ -2.18
HMGB3-203ENST00000430118 MUC19Q7Z5P9 8384 aa1.44□□□□□ -2.18
HMGB3-203ENST00000430118 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
HMGB3-203ENST00000430118 KRTAP5-10Q6L8G5 202 aa1.38□□□□□ -2.19
HMGB3-203ENST00000430118 MT4P47944 62 aa1.35□□□□□ -2.19
HMGB3-203ENST00000430118 MT1XP80297 61 aa1.35□□□□□ -2.19
HMGB3-203ENST00000430118 KRTAP19-3Q7Z4W3 81 aa1.29□□□□□ -2.2
HMGB3-203ENST00000430118 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
HMGB3-203ENST00000430118 MUC5BQ9HC84 5762 aaPredicted RBP1.24□□□□□ -2.21
HMGB3-203ENST00000430118 KRTAP21-2Q3LI59 83 aa1.24□□□□□ -2.21
HMGB3-203ENST00000430118 MUC5ACP98088 5654 aa1.23□□□□□ -2.21
HMGB3-203ENST00000430118 MT1GP13640 62 aa1.23□□□□□ -2.21
HMGB3-203ENST00000430118 MT1EP04732 61 aa1.22□□□□□ -2.21
HMGB3-203ENST00000430118 KRTAP20-2Q3LI61 65 aa1.2□□□□□ -2.22
HMGB3-203ENST00000430118 KRTAP19-7Q3SYF9 63 aa1.2□□□□□ -2.22
HMGB3-203ENST00000430118 MT1MQ8N339 61 aa1.18□□□□□ -2.22
HMGB3-203ENST00000430118 KRTAP19-5Q3LI72 72 aa1.13□□□□□ -2.23
HMGB3-203ENST00000430118 MT1LQ93083 61 aa1.13□□□□□ -2.23
HMGB3-203ENST00000430118 SYNE1Q8NF91 8797 aaKnown RBP1.1□□□□□ -2.23
HMGB3-203ENST00000430118 MT1AP04731 61 aa1.03□□□□□ -2.24
HMGB3-203ENST00000430118 PRM1P04553 51 aa1.02□□□□□ -2.25
HMGB3-203ENST00000430118 KRTAP6-2Q3LI66 62 aa0.96□□□□□ -2.26
HMGB3-203ENST00000430118 KRTAP6-1Q3LI64 71 aa0.95□□□□□ -2.26
HMGB3-203ENST00000430118 PHGR1C9JFL3 82 aa0.85□□□□□ -2.27
HMGB3-203ENST00000430118 KRTAP21-1Q3LI58 79 aa0.75□□□□□ -2.29
HMGB3-203ENST00000430118 MUC16Q8WXI7 14507 aa0.65□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 41.9 ms