RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 A0A0D9SG42 100 aa3.91□□□□□ -1.78
HDAC1-202ENST00000428704 KRTAP12-1P59990 96 aa3.91□□□□□ -1.78
HDAC1-202ENST00000428704 DSTQ03001 7570 aaKnown RBP3.91□□□□□ -1.78
HDAC1-202ENST00000428704 ROMO1P60602 79 aa3.89□□□□□ -1.79
HDAC1-202ENST00000428704 R4GN34 69 aa3.89□□□□□ -1.79
HDAC1-202ENST00000428704 KRTAP12-2P59991 146 aa3.88□□□□□ -1.79
HDAC1-202ENST00000428704 PRAC1Q96KF2 57 aa3.88□□□□□ -1.79
HDAC1-202ENST00000428704 CRIPTQ9P021 101 aa3.87□□□□□ -1.79
HDAC1-202ENST00000428704 KRTAP10-7P60409 375 aaPredicted RBP3.84□□□□□ -1.79
HDAC1-202ENST00000428704 SPINT4Q6UDR6 99 aa3.84□□□□□ -1.79
HDAC1-202ENST00000428704 SPRR2FQ96RM1 72 aa3.84□□□□□ -1.79
HDAC1-202ENST00000428704 MT1BP07438 61 aa3.82□□□□□ -1.8
HDAC1-202ENST00000428704 KRTAP25-1Q3LHN0 102 aa3.82□□□□□ -1.8
HDAC1-202ENST00000428704 SPRR2GQ9BYE4 73 aa3.82□□□□□ -1.8
HDAC1-202ENST00000428704 SPRR2DP22532 72 aa3.8□□□□□ -1.8
HDAC1-202ENST00000428704 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
HDAC1-202ENST00000428704 KRTAP19-8Q3LI54 63 aa3.8□□□□□ -1.8
HDAC1-202ENST00000428704 LINC01554Q52M75 96 aa3.77□□□□□ -1.81
HDAC1-202ENST00000428704 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
HDAC1-202ENST00000428704 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.82
HDAC1-202ENST00000428704 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
HDAC1-202ENST00000428704 KRTAP5-11Q6L8G4 156 aa3.7□□□□□ -1.82
HDAC1-202ENST00000428704 C10orf95Q9H7T3 257 aa3.69□□□□□ -1.82
HDAC1-202ENST00000428704 HMCN1Q96RW7 5635 aa3.66□□□□□ -1.82
HDAC1-202ENST00000428704 NDUFAF8A1L188 74 aa3.65□□□□□ -1.83
HDAC1-202ENST00000428704 CAMK2N1Q7Z7J9 78 aa3.65□□□□□ -1.83
HDAC1-202ENST00000428704 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.83
HDAC1-202ENST00000428704 KRTAP10-12P60413 245 aa3.62□□□□□ -1.83
HDAC1-202ENST00000428704 PLAC4Q8WY50 150 aa3.6□□□□□ -1.83
HDAC1-202ENST00000428704 PP632Q6XCG6 107 aa3.59□□□□□ -1.83
HDAC1-202ENST00000428704 MT1XP80297 61 aa3.58□□□□□ -1.84
HDAC1-202ENST00000428704 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.57□□□□□ -1.84
HDAC1-202ENST00000428704 TNP1P09430 55 aa3.55□□□□□ -1.84
HDAC1-202ENST00000428704 PRO2289Q9P1D8 64 aa3.51□□□□□ -1.85
HDAC1-202ENST00000428704 KRTAP5-10Q6L8G5 202 aa3.46□□□□□ -1.86
HDAC1-202ENST00000428704 LCE3CQ5T5A8 94 aa3.45□□□□□ -1.86
HDAC1-202ENST00000428704 SPRR5A0A1B0GTR4 108 aa3.41□□□□□ -1.86
HDAC1-202ENST00000428704 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
HDAC1-202ENST00000428704 KRTAP9-6A8MVA2 160 aa3.37□□□□□ -1.87
HDAC1-202ENST00000428704 MT4P47944 62 aa3.37□□□□□ -1.87
HDAC1-202ENST00000428704 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
HDAC1-202ENST00000428704 AHNAKQ09666 5890 aaKnown RBP3.28□□□□□ -1.88
HDAC1-202ENST00000428704 KRTAP12-3P60328 96 aa3.22□□□□□ -1.89
HDAC1-202ENST00000428704 KRTAP19-7Q3SYF9 63 aa3.21□□□□□ -1.9
HDAC1-202ENST00000428704 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
HDAC1-202ENST00000428704 MT1EP04732 61 aa3.16□□□□□ -1.9
HDAC1-202ENST00000428704 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
HDAC1-202ENST00000428704 KRTAP19-3Q7Z4W3 81 aa3.15□□□□□ -1.91
HDAC1-202ENST00000428704 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
HDAC1-202ENST00000428704 KRTAP19-5Q3LI72 72 aa3.12□□□□□ -1.91
HDAC1-202ENST00000428704 MUC5BQ9HC84 5762 aaPredicted RBP3.12□□□□□ -1.91
HDAC1-202ENST00000428704 KRTAP5-4Q6L8H1 288 aa3.11□□□□□ -1.91
HDAC1-202ENST00000428704 KRTAP5-1Q6L8H4 278 aa3.11□□□□□ -1.91
HDAC1-202ENST00000428704 MT1GP13640 62 aa3.03□□□□□ -1.92
HDAC1-202ENST00000428704 MT1LQ93083 61 aa3.02□□□□□ -1.93
HDAC1-202ENST00000428704 MT1MQ8N339 61 aa3.01□□□□□ -1.93
HDAC1-202ENST00000428704 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
HDAC1-202ENST00000428704 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
HDAC1-202ENST00000428704 KRTAP4-3Q9BYR4 195 aa2.95□□□□□ -1.94
HDAC1-202ENST00000428704 SYNE1Q8NF91 8797 aaKnown RBP2.92□□□□□ -1.94
HDAC1-202ENST00000428704 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
HDAC1-202ENST00000428704 KRTAP12-4P60329 112 aa2.84□□□□□ -1.95
HDAC1-202ENST00000428704 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
HDAC1-202ENST00000428704 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
HDAC1-202ENST00000428704 INE1O15225 51 aa2.71□□□□□ -1.98
HDAC1-202ENST00000428704 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
HDAC1-202ENST00000428704 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
HDAC1-202ENST00000428704 MT1AP04731 61 aa2.57□□□□□ -2
HDAC1-202ENST00000428704 KRTAP6-1Q3LI64 71 aa2.56□□□□□ -2
HDAC1-202ENST00000428704 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
HDAC1-202ENST00000428704 LCE1BQ5T7P3 118 aa2.49□□□□□ -2.01
HDAC1-202ENST00000428704 KRTAP6-2Q3LI66 62 aa2.43□□□□□ -2.02
HDAC1-202ENST00000428704 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
HDAC1-202ENST00000428704 PRM1P04553 51 aa2.01□□□□□ -2.09
HDAC1-202ENST00000428704 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
HDAC1-202ENST00000428704 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
HDAC1-202ENST00000428704 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
HDAC1-202ENST00000428704 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 64.1 ms