RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 MIR22HGQ0VDD5 57 aa3.7□□□□□ -1.82
PDGFC-202ENST00000422544 KRTAP10-12P60413 245 aa3.68□□□□□ -1.82
PDGFC-202ENST00000422544 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
PDGFC-202ENST00000422544 KRTAP2-1Q9BYU5 128 aa3.68□□□□□ -1.82
PDGFC-202ENST00000422544 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.83
PDGFC-202ENST00000422544 A6NED7 52 aa3.63□□□□□ -1.83
PDGFC-202ENST00000422544 SPRR2EP22531 72 aa3.63□□□□□ -1.83
PDGFC-202ENST00000422544 SPRR2BP35325 72 aa3.63□□□□□ -1.83
PDGFC-202ENST00000422544 SPRR2AP35326 72 aa3.63□□□□□ -1.83
PDGFC-202ENST00000422544 LCE1AQ5T7P2 110 aa3.63□□□□□ -1.83
PDGFC-202ENST00000422544 C10orf95Q9H7T3 257 aa3.61□□□□□ -1.83
PDGFC-202ENST00000422544 SPRR2FQ96RM1 72 aa3.59□□□□□ -1.83
PDGFC-202ENST00000422544 K7ERS5 55 aa3.57□□□□□ -1.84
PDGFC-202ENST00000422544 TNP1P09430 55 aa3.54□□□□□ -1.84
PDGFC-202ENST00000422544 SPRR2DP22532 72 aa3.51□□□□□ -1.85
PDGFC-202ENST00000422544 CDC42SE1Q9NRR8 79 aa3.5□□□□□ -1.85
PDGFC-202ENST00000422544 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
PDGFC-202ENST00000422544 KRTAP19-7Q3SYF9 63 aa3.47□□□□□ -1.85
PDGFC-202ENST00000422544 LCE3AQ5TA76 89 aa3.47□□□□□ -1.85
PDGFC-202ENST00000422544 KRTAP19-5Q3LI72 72 aa3.45□□□□□ -1.86
PDGFC-202ENST00000422544 AHNAK2Q8IVF2 5795 aa3.44□□□□□ -1.86
PDGFC-202ENST00000422544 MT1EP04732 61 aa3.43□□□□□ -1.86
PDGFC-202ENST00000422544 KRTAP25-1Q3LHN0 102 aa3.43□□□□□ -1.86
PDGFC-202ENST00000422544 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.86
PDGFC-202ENST00000422544 ROMO1P60602 79 aa3.38□□□□□ -1.87
PDGFC-202ENST00000422544 KRTAP19-3Q7Z4W3 81 aa3.35□□□□□ -1.87
PDGFC-202ENST00000422544 BRK1Q8WUW1 75 aa3.35□□□□□ -1.87
PDGFC-202ENST00000422544 MT3P25713 68 aa3.33□□□□□ -1.88
PDGFC-202ENST00000422544 KRTAP12-3P60328 96 aa3.33□□□□□ -1.88
PDGFC-202ENST00000422544 MT1LQ93083 61 aa3.31□□□□□ -1.88
PDGFC-202ENST00000422544 MT1GP13640 62 aa3.3□□□□□ -1.88
PDGFC-202ENST00000422544 KRTAP5-10Q6L8G5 202 aa3.28□□□□□ -1.88
PDGFC-202ENST00000422544 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
PDGFC-202ENST00000422544 PP632Q6XCG6 107 aa3.25□□□□□ -1.89
PDGFC-202ENST00000422544 MT1MQ8N339 61 aa3.25□□□□□ -1.89
PDGFC-202ENST00000422544 KRTAP4-3Q9BYR4 195 aa3.19□□□□□ -1.9
PDGFC-202ENST00000422544 PMAIP1Q13794 54 aa3.16□□□□□ -1.9
PDGFC-202ENST00000422544 KRTAP5-7Q6L8G8 165 aa3.16□□□□□ -1.9
PDGFC-202ENST00000422544 MT4P47944 62 aa3.12□□□□□ -1.91
PDGFC-202ENST00000422544 NDUFAF8A1L188 74 aa3.1□□□□□ -1.91
PDGFC-202ENST00000422544 LCE3CQ5T5A8 94 aa3.09□□□□□ -1.91
PDGFC-202ENST00000422544 PRO0628Q9UI54 55 aa3.09□□□□□ -1.91
PDGFC-202ENST00000422544 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
PDGFC-202ENST00000422544 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
PDGFC-202ENST00000422544 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
PDGFC-202ENST00000422544 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
PDGFC-202ENST00000422544 SPRR5A0A1B0GTR4 108 aa2.94□□□□□ -1.94
PDGFC-202ENST00000422544 KRTAP9-6A8MVA2 160 aa2.92□□□□□ -1.94
PDGFC-202ENST00000422544 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
PDGFC-202ENST00000422544 AHNAKQ09666 5890 aaKnown RBP2.9□□□□□ -1.94
PDGFC-202ENST00000422544 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.9□□□□□ -1.95
PDGFC-202ENST00000422544 KTN1-AS1Q86SY8 53 aa2.9□□□□□ -1.95
PDGFC-202ENST00000422544 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
PDGFC-202ENST00000422544 MUC5BQ9HC84 5762 aaPredicted RBP2.86□□□□□ -1.95
PDGFC-202ENST00000422544 MUC5ACP98088 5654 aa2.85□□□□□ -1.95
PDGFC-202ENST00000422544 SYNE1Q8NF91 8797 aaKnown RBP2.85□□□□□ -1.95
PDGFC-202ENST00000422544 KRTAP12-4P60329 112 aa2.83□□□□□ -1.96
PDGFC-202ENST00000422544 MT1AP04731 61 aa2.81□□□□□ -1.96
PDGFC-202ENST00000422544 KRTAP6-1Q3LI64 71 aa2.8□□□□□ -1.96
PDGFC-202ENST00000422544 KRTAP5-8O75690 187 aa2.69□□□□□ -1.98
PDGFC-202ENST00000422544 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
PDGFC-202ENST00000422544 KRTAP5-2Q701N4 177 aa2.63□□□□□ -1.99
PDGFC-202ENST00000422544 OBSCNQ5VST9 7968 aa2.59□□□□□ -1.99
PDGFC-202ENST00000422544 KRTAP5-1Q6L8H4 278 aa2.55□□□□□ -2
PDGFC-202ENST00000422544 LCE3EQ5T5B0 92 aa2.52□□□□□ -2.01
PDGFC-202ENST00000422544 LUZP6Q538Z0 58 aa2.48□□□□□ -2.01
PDGFC-202ENST00000422544 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
PDGFC-202ENST00000422544 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
PDGFC-202ENST00000422544 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
PDGFC-202ENST00000422544 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
PDGFC-202ENST00000422544 PHGR1C9JFL3 82 aa1.84□□□□□ -2.11
PDGFC-202ENST00000422544 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
PDGFC-202ENST00000422544 INE1O15225 51 aa1.78□□□□□ -2.12
PDGFC-202ENST00000422544 PRM1P04553 51 aa1.75□□□□□ -2.13
PDGFC-202ENST00000422544 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.15
PDGFC-202ENST00000422544 KRTAP21-1Q3LI58 79 aa1.37□□□□□ -2.19
PDGFC-202ENST00000422544 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 12.7 ms