RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 KRTAP12-2P59991 146 aa5.27□□□□□ -1.57
LINC00339-202ENST00000416769 GPR98Q8WXG9 6306 aa5.25□□□□□ -1.57
LINC00339-202ENST00000416769 A0A0D9SG42 100 aa5.25□□□□□ -1.57
LINC00339-202ENST00000416769 KRTAP10-7P60409 375 aaPredicted RBP5.22□□□□□ -1.57
LINC00339-202ENST00000416769 A8MU10 97 aa5.2□□□□□ -1.58
LINC00339-202ENST00000416769 MIR22HGQ0VDD5 57 aa5.19□□□□□ -1.58
LINC00339-202ENST00000416769 KRTAP12-1P59990 96 aa5.18□□□□□ -1.58
LINC00339-202ENST00000416769 SPINT4Q6UDR6 99 aa5.17□□□□□ -1.58
LINC00339-202ENST00000416769 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
LINC00339-202ENST00000416769 A6NED7 52 aa5.14□□□□□ -1.59
LINC00339-202ENST00000416769 KRTAP10-12P60413 245 aa5.12□□□□□ -1.59
LINC00339-202ENST00000416769 PRAC1Q96KF2 57 aa5.12□□□□□ -1.59
LINC00339-202ENST00000416769 CAMK2N1Q7Z7J9 78 aa5.11□□□□□ -1.59
LINC00339-202ENST00000416769 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
LINC00339-202ENST00000416769 K7ERS5 55 aa5.03□□□□□ -1.6
LINC00339-202ENST00000416769 CDC42SE1Q9NRR8 79 aa5.03□□□□□ -1.6
LINC00339-202ENST00000416769 C10orf95Q9H7T3 257 aa4.92□□□□□ -1.62
LINC00339-202ENST00000416769 KRTAP19-7Q3SYF9 63 aa4.88□□□□□ -1.63
LINC00339-202ENST00000416769 BRK1Q8WUW1 75 aa4.85□□□□□ -1.63
LINC00339-202ENST00000416769 TNP1P09430 55 aa4.84□□□□□ -1.63
LINC00339-202ENST00000416769 MT1EP04732 61 aa4.83□□□□□ -1.64
LINC00339-202ENST00000416769 KRTAP19-3Q7Z4W3 81 aa4.83□□□□□ -1.64
LINC00339-202ENST00000416769 HMCN1Q96RW7 5635 aa4.78□□□□□ -1.64
LINC00339-202ENST00000416769 MT4P47944 62 aa4.77□□□□□ -1.65
LINC00339-202ENST00000416769 AHNAK2Q8IVF2 5795 aa4.77□□□□□ -1.65
LINC00339-202ENST00000416769 ROMO1P60602 79 aa4.76□□□□□ -1.65
LINC00339-202ENST00000416769 KRTAP25-1Q3LHN0 102 aa4.76□□□□□ -1.65
LINC00339-202ENST00000416769 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
LINC00339-202ENST00000416769 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
LINC00339-202ENST00000416769 KRTAP5-10Q6L8G5 202 aa4.66□□□□□ -1.66
LINC00339-202ENST00000416769 KRTAP4-3Q9BYR4 195 aa4.64□□□□□ -1.67
LINC00339-202ENST00000416769 MT1MQ8N339 61 aa4.63□□□□□ -1.67
LINC00339-202ENST00000416769 MT1GP13640 62 aa4.62□□□□□ -1.67
LINC00339-202ENST00000416769 PMAIP1Q13794 54 aa4.61□□□□□ -1.67
LINC00339-202ENST00000416769 PRO0628Q9UI54 55 aa4.61□□□□□ -1.67
LINC00339-202ENST00000416769 KRTAP5-4Q6L8H1 288 aa4.58□□□□□ -1.68
LINC00339-202ENST00000416769 NDUFAF8A1L188 74 aa4.56□□□□□ -1.68
LINC00339-202ENST00000416769 MT1LQ93083 61 aa4.56□□□□□ -1.68
LINC00339-202ENST00000416769 PP632Q6XCG6 107 aa4.54□□□□□ -1.68
LINC00339-202ENST00000416769 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
LINC00339-202ENST00000416769 KRTAP5-7Q6L8G8 165 aa4.49□□□□□ -1.69
LINC00339-202ENST00000416769 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
LINC00339-202ENST00000416769 SPRR5A0A1B0GTR4 108 aa4.33□□□□□ -1.72
LINC00339-202ENST00000416769 KTN1-AS1Q86SY8 53 aa4.31□□□□□ -1.72
LINC00339-202ENST00000416769 KRTAP5-5Q701N2 237 aaPredicted RBP4.28□□□□□ -1.72
LINC00339-202ENST00000416769 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.21□□□□□ -1.74
LINC00339-202ENST00000416769 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
LINC00339-202ENST00000416769 LCE3CQ5T5A8 94 aa4.19□□□□□ -1.74
LINC00339-202ENST00000416769 MT3P25713 68 aa4.14□□□□□ -1.75
LINC00339-202ENST00000416769 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
LINC00339-202ENST00000416769 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
LINC00339-202ENST00000416769 LUZP6Q538Z0 58 aa4.02□□□□□ -1.77
LINC00339-202ENST00000416769 AHNAKQ09666 5890 aaKnown RBP3.99□□□□□ -1.77
LINC00339-202ENST00000416769 MUC5ACP98088 5654 aa3.96□□□□□ -1.78
LINC00339-202ENST00000416769 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
LINC00339-202ENST00000416769 KRTAP5-2Q701N4 177 aa3.96□□□□□ -1.78
LINC00339-202ENST00000416769 KRTAP5-8O75690 187 aa3.95□□□□□ -1.78
LINC00339-202ENST00000416769 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
LINC00339-202ENST00000416769 MUC5BQ9HC84 5762 aaPredicted RBP3.92□□□□□ -1.78
LINC00339-202ENST00000416769 KRTAP6-1Q3LI64 71 aa3.91□□□□□ -1.78
LINC00339-202ENST00000416769 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
LINC00339-202ENST00000416769 MT1AP04731 61 aa3.85□□□□□ -1.79
LINC00339-202ENST00000416769 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
LINC00339-202ENST00000416769 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
LINC00339-202ENST00000416769 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
LINC00339-202ENST00000416769 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
LINC00339-202ENST00000416769 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
LINC00339-202ENST00000416769 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
LINC00339-202ENST00000416769 LCE3DQ9BYE3 92 aa3.1□□□□□ -1.91
LINC00339-202ENST00000416769 LCE1CQ5T751 118 aa3.04□□□□□ -1.92
LINC00339-202ENST00000416769 INE1O15225 51 aa2.74□□□□□ -1.97
LINC00339-202ENST00000416769 PHGR1C9JFL3 82 aa2.72□□□□□ -1.97
LINC00339-202ENST00000416769 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
LINC00339-202ENST00000416769 PRM1P04553 51 aa2.44□□□□□ -2.02
LINC00339-202ENST00000416769 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
LINC00339-202ENST00000416769 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
LINC00339-202ENST00000416769 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 102.7 ms