RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	PRO0628	Q9UI54	55 aa		5.13	□□□□□ -1.59
SF1-206	ENST00000413725	TNP1	P09430	55 aa		5.12	□□□□□ -1.59
SF1-206	ENST00000413725	CDC42SE1	Q9NRR8	79 aa		5.12	□□□□□ -1.59
SF1-206	ENST00000413725	SPRR2F	Q96RM1	72 aa		5.08	□□□□□ -1.6
SF1-206	ENST00000413725	MUC12	Q9UKN1	5478 aa		5.07	□□□□□ -1.6
SF1-206	ENST00000413725	KRTAP25-1	Q3LHN0	102 aa		4.99	□□□□□ -1.61
SF1-206	ENST00000413725	BRK1	Q8WUW1	75 aa		4.99	□□□□□ -1.61
SF1-206	ENST00000413725	MDN1	Q9NU22	5596 aa		4.96	□□□□□ -1.62
SF1-206	ENST00000413725	LCE3A	Q5TA76	89 aa		4.94	□□□□□ -1.62
SF1-206	ENST00000413725	SPRR2E	P22531	72 aa		4.93	□□□□□ -1.62
SF1-206	ENST00000413725	SPRR2B	P35325	72 aa		4.93	□□□□□ -1.62
SF1-206	ENST00000413725	SPRR2A	P35326	72 aa		4.93	□□□□□ -1.62
SF1-206	ENST00000413725	ROMO1	P60602	79 aa		4.92	□□□□□ -1.62
SF1-206	ENST00000413725	KRTAP19-7	Q3SYF9	63 aa		4.9	□□□□□ -1.63
SF1-206	ENST00000413725	LCE1A	Q5T7P2	110 aa		4.89	□□□□□ -1.63
SF1-206	ENST00000413725	KRTAP19-5	Q3LI72	72 aa		4.88	□□□□□ -1.63
SF1-206	ENST00000413725	MT1E	P04732	61 aa		4.86	□□□□□ -1.63
SF1-206	ENST00000413725	KRTAP20-1	Q3LI63	56 aa		4.84	□□□□□ -1.63
SF1-206	ENST00000413725	KRTAP2-3	P0C7H8	128 aa		4.8	□□□□□ -1.64
SF1-206	ENST00000413725	KRTAP2-4	Q9BYR9	128 aa		4.8	□□□□□ -1.64
SF1-206	ENST00000413725	PMAIP1	Q13794	54 aa		4.79	□□□□□ -1.64
SF1-206	ENST00000413725		A0A0A0MQY5	61 aa		4.77	□□□□□ -1.65
SF1-206	ENST00000413725	SPRR2D	P22532	72 aa		4.77	□□□□□ -1.65
SF1-206	ENST00000413725	KRTAP12-3	P60328	96 aa		4.77	□□□□□ -1.65
SF1-206	ENST00000413725	KRTAP19-3	Q7Z4W3	81 aa		4.76	□□□□□ -1.65
SF1-206	ENST00000413725	PP632	Q6XCG6	107 aa		4.73	□□□□□ -1.65
SF1-206	ENST00000413725	MT1L	Q93083	61 aa		4.7	□□□□□ -1.66
SF1-206	ENST00000413725	MT1G	P13640	62 aa		4.69	□□□□□ -1.66
SF1-206	ENST00000413725	KTN1-AS1	Q86SY8	53 aa		4.69	□□□□□ -1.66
SF1-206	ENST00000413725	KRTAP2-2	Q9BYT5	123 aa		4.66	□□□□□ -1.66
SF1-206	ENST00000413725	KRTAP2-1	Q9BYU5	128 aa		4.66	□□□□□ -1.66
SF1-206	ENST00000413725	MT1M	Q8N339	61 aa		4.61	□□□□□ -1.67
SF1-206	ENST00000413725	DST	Q03001	7570 aa	Known RBP	4.56	□□□□□ -1.68
SF1-206	ENST00000413725	KRTAP4-3	Q9BYR4	195 aa		4.46	□□□□□ -1.7
SF1-206	ENST00000413725	LCE3C	Q5T5A8	94 aa		4.42	□□□□□ -1.7
SF1-206	ENST00000413725	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.41	□□□□□ -1.7
SF1-206	ENST00000413725	PRAC1	Q96KF2	57 aa		4.38	□□□□□ -1.71
SF1-206	ENST00000413725	MT3	P25713	68 aa		4.3	□□□□□ -1.72
SF1-206	ENST00000413725	KRTAP5-4	Q6L8H1	288 aa		4.19	□□□□□ -1.74
SF1-206	ENST00000413725	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.17	□□□□□ -1.74
SF1-206	ENST00000413725	MT4	P47944	62 aa		4.13	□□□□□ -1.75
SF1-206	ENST00000413725	KRTAP9-6	A8MVA2	160 aa		4.12	□□□□□ -1.75
SF1-206	ENST00000413725	KRTAP5-11	Q6L8G4	156 aa		4.12	□□□□□ -1.75
SF1-206	ENST00000413725	GPR98	Q8WXG9	6306 aa		4.09	□□□□□ -1.75
SF1-206	ENST00000413725	HMCN1	Q96RW7	5635 aa		4.06	□□□□□ -1.76
SF1-206	ENST00000413725	KRTAP12-4	P60329	112 aa		4.03	□□□□□ -1.76
SF1-206	ENST00000413725	MT1A	P04731	61 aa		4.02	□□□□□ -1.77
SF1-206	ENST00000413725	SPRR5	A0A1B0GTR4	108 aa		3.97	□□□□□ -1.77
SF1-206	ENST00000413725	KRTAP6-1	Q3LI64	71 aa		3.96	□□□□□ -1.78
SF1-206	ENST00000413725	SYNE1	Q8NF91	8797 aa	Known RBP	3.96	□□□□□ -1.78
SF1-206	ENST00000413725	NDUFAF8	A1L188	74 aa		3.95	□□□□□ -1.78
SF1-206	ENST00000413725	KRTAP20-2	Q3LI61	65 aa		3.94	□□□□□ -1.78
SF1-206	ENST00000413725	AHNAK2	Q8IVF2	5795 aa		3.85	□□□□□ -1.79
SF1-206	ENST00000413725	LCE1E	Q5T753	118 aa		3.78	□□□□□ -1.8
SF1-206	ENST00000413725	KRTAP5-10	Q6L8G5	202 aa		3.78	□□□□□ -1.8
SF1-206	ENST00000413725	LUZP6	Q538Z0	58 aa		3.77	□□□□□ -1.81
SF1-206	ENST00000413725	KRTAP5-1	Q6L8H4	278 aa		3.76	□□□□□ -1.81
SF1-206	ENST00000413725	KRTAP5-2	Q701N4	177 aa		3.73	□□□□□ -1.81
SF1-206	ENST00000413725	KRTAP6-2	Q3LI66	62 aa		3.72	□□□□□ -1.81
SF1-206	ENST00000413725	LCE1F	Q5T754	118 aa		3.64	□□□□□ -1.83
SF1-206	ENST00000413725	KRTAP5-7	Q6L8G8	165 aa		3.64	□□□□□ -1.83
SF1-206	ENST00000413725	KRTAP4-4	Q9BYR3	166 aa		3.63	□□□□□ -1.83
SF1-206	ENST00000413725	OBSCN	Q5VST9	7968 aa		3.52	□□□□□ -1.85
SF1-206	ENST00000413725	KRTAP5-8	O75690	187 aa		3.39	□□□□□ -1.87
SF1-206	ENST00000413725	LCE3D	Q9BYE3	92 aa		3.26	□□□□□ -1.89
SF1-206	ENST00000413725	INE1	O15225	51 aa		3.25	□□□□□ -1.89
SF1-206	ENST00000413725	AHNAK	Q09666	5890 aa	Known RBP	3.19	□□□□□ -1.9
SF1-206	ENST00000413725	MUC5AC	P98088	5654 aa		3.18	□□□□□ -1.9
SF1-206	ENST00000413725	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.16	□□□□□ -1.9
SF1-206	ENST00000413725	LCE3E	Q5T5B0	92 aa		3.12	□□□□□ -1.91
SF1-206	ENST00000413725	LCE1B	Q5T7P3	118 aa		3.07	□□□□□ -1.92
SF1-206	ENST00000413725	LCE1C	Q5T751	118 aa		3.04	□□□□□ -1.92
SF1-206	ENST00000413725	KRTAP21-2	Q3LI59	83 aa		2.59	□□□□□ -1.99
SF1-206	ENST00000413725	PRM1	P04553	51 aa		2.53	□□□□□ -2
SF1-206	ENST00000413725	PHGR1	C9JFL3	82 aa		2.34	□□□□□ -2.03
SF1-206	ENST00000413725	MUC19	Q7Z5P9	8384 aa		2.15	□□□□□ -2.07
SF1-206	ENST00000413725	KRTAP21-1	Q3LI58	79 aa		1.71	□□□□□ -2.14
SF1-206	ENST00000413725	MUC16	Q8WXI7	14507 aa		1.52	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 13.6 ms