RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KRTAP12-1P59990 96 aa2.47□□□□□ -2.01
USP54-202ENST00000413442 BRK1Q8WUW1 75 aa2.47□□□□□ -2.01
USP54-202ENST00000413442 KRTAP2-2Q9BYT5 123 aa2.46□□□□□ -2.02
USP54-202ENST00000413442 KRTAP2-1Q9BYU5 128 aa2.46□□□□□ -2.02
USP54-202ENST00000413442 UQCR11O14957 56 aa2.45□□□□□ -2.02
USP54-202ENST00000413442 Q1T7F1 81 aa2.45□□□□□ -2.02
USP54-202ENST00000413442 SPRR2DP22532 72 aa2.43□□□□□ -2.02
USP54-202ENST00000413442 TNP1P09430 55 aa2.42□□□□□ -2.02
USP54-202ENST00000413442 PMAIP1Q13794 54 aa2.42□□□□□ -2.02
USP54-202ENST00000413442 KRTAP15-1Q3LI76 137 aa2.39□□□□□ -2.03
USP54-202ENST00000413442 A8MU10 97 aa2.38□□□□□ -2.03
USP54-202ENST00000413442 K7ERS5 55 aa2.38□□□□□ -2.03
USP54-202ENST00000413442 KRTAP19-7Q3SYF9 63 aa2.38□□□□□ -2.03
USP54-202ENST00000413442 PP632Q6XCG6 107 aa2.38□□□□□ -2.03
USP54-202ENST00000413442 MT1GP13640 62 aa2.37□□□□□ -2.03
USP54-202ENST00000413442 C10orf95Q9H7T3 257 aa2.37□□□□□ -2.03
USP54-202ENST00000413442 MIR22HGQ0VDD5 57 aa2.36□□□□□ -2.03
USP54-202ENST00000413442 KRTAP19-3Q7Z4W3 81 aa2.36□□□□□ -2.03
USP54-202ENST00000413442 MT1EP04732 61 aa2.35□□□□□ -2.03
USP54-202ENST00000413442 KTN1-AS1Q86SY8 53 aa2.35□□□□□ -2.03
USP54-202ENST00000413442 PSPHP1O15172 72 aa2.34□□□□□ -2.03
USP54-202ENST00000413442 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
USP54-202ENST00000413442 CDC42SE1Q9NRR8 79 aa2.32□□□□□ -2.04
USP54-202ENST00000413442 KRTAP23-1A1A580 65 aa2.31□□□□□ -2.04
USP54-202ENST00000413442 KRTAP19-5Q3LI72 72 aa2.31□□□□□ -2.04
USP54-202ENST00000413442 A6NED7 52 aa2.3□□□□□ -2.04
USP54-202ENST00000413442 LCE3AQ5TA76 89 aa2.28□□□□□ -2.04
USP54-202ENST00000413442 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
USP54-202ENST00000413442 MT1LQ93083 61 aa2.26□□□□□ -2.05
USP54-202ENST00000413442 KRTAP12-3P60328 96 aa2.25□□□□□ -2.05
USP54-202ENST00000413442 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.25□□□□□ -2.05
USP54-202ENST00000413442 MT1MQ8N339 61 aa2.24□□□□□ -2.05
USP54-202ENST00000413442 GPR98Q8WXG9 6306 aa2.23□□□□□ -2.05
USP54-202ENST00000413442 ROMO1P60602 79 aa2.16□□□□□ -2.06
USP54-202ENST00000413442 KRTAP5-11Q6L8G4 156 aa2.16□□□□□ -2.06
USP54-202ENST00000413442 KRTAP5-4Q6L8H1 288 aa2.16□□□□□ -2.06
USP54-202ENST00000413442 PRAC1Q96KF2 57 aa2.11□□□□□ -2.07
USP54-202ENST00000413442 LCE3CQ5T5A8 94 aa2.09□□□□□ -2.07
USP54-202ENST00000413442 KRTAP4-3Q9BYR4 195 aa2.09□□□□□ -2.07
USP54-202ENST00000413442 SPRR5A0A1B0GTR4 108 aa2.08□□□□□ -2.08
USP54-202ENST00000413442 MT4P47944 62 aa2.08□□□□□ -2.08
USP54-202ENST00000413442 KRTAP12-4P60329 112 aa2.07□□□□□ -2.08
USP54-202ENST00000413442 KRTAP5-5Q701N2 237 aaPredicted RBP2.06□□□□□ -2.08
USP54-202ENST00000413442 LCE1EQ5T753 118 aa2.04□□□□□ -2.08
USP54-202ENST00000413442 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
USP54-202ENST00000413442 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
USP54-202ENST00000413442 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
USP54-202ENST00000413442 MT1AP04731 61 aa1.96□□□□□ -2.1
USP54-202ENST00000413442 KRTAP5-10Q6L8G5 202 aa1.96□□□□□ -2.1
USP54-202ENST00000413442 SYNE1Q8NF91 8797 aaKnown RBP1.93□□□□□ -2.1
USP54-202ENST00000413442 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
USP54-202ENST00000413442 KRTAP5-1Q6L8H4 278 aa1.92□□□□□ -2.1
USP54-202ENST00000413442 KRTAP6-1Q3LI64 71 aa1.89□□□□□ -2.11
USP54-202ENST00000413442 KRTAP5-2Q701N4 177 aa1.89□□□□□ -2.11
USP54-202ENST00000413442 KRTAP9-6A8MVA2 160 aa1.87□□□□□ -2.11
USP54-202ENST00000413442 NDUFAF8A1L188 74 aa1.85□□□□□ -2.11
USP54-202ENST00000413442 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.11
USP54-202ENST00000413442 MT3P25713 68 aa1.83□□□□□ -2.12
USP54-202ENST00000413442 KRTAP6-2Q3LI66 62 aa1.8□□□□□ -2.12
USP54-202ENST00000413442 LUZP6Q538Z0 58 aa1.78□□□□□ -2.12
USP54-202ENST00000413442 A0A0A0MQY5 61 aa1.77□□□□□ -2.13
USP54-202ENST00000413442 KRTAP5-8O75690 187 aa1.75□□□□□ -2.13
USP54-202ENST00000413442 OBSCNQ5VST9 7968 aa1.74□□□□□ -2.13
USP54-202ENST00000413442 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
USP54-202ENST00000413442 MUC5BQ9HC84 5762 aaPredicted RBP1.69□□□□□ -2.14
USP54-202ENST00000413442 MUC5ACP98088 5654 aa1.66□□□□□ -2.14
USP54-202ENST00000413442 INE1O15225 51 aa1.61□□□□□ -2.15
USP54-202ENST00000413442 LCE1CQ5T751 118 aa1.57□□□□□ -2.16
USP54-202ENST00000413442 LCE1BQ5T7P3 118 aa1.57□□□□□ -2.16
USP54-202ENST00000413442 LCE1FQ5T754 118 aa1.55□□□□□ -2.16
USP54-202ENST00000413442 LCE3DQ9BYE3 92 aa1.54□□□□□ -2.16
USP54-202ENST00000413442 LCE3EQ5T5B0 92 aa1.45□□□□□ -2.18
USP54-202ENST00000413442 KRTAP21-2Q3LI59 83 aa1.26□□□□□ -2.21
USP54-202ENST00000413442 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
USP54-202ENST00000413442 MUC19Q7Z5P9 8384 aa1.14□□□□□ -2.23
USP54-202ENST00000413442 PRM1P04553 51 aa1.05□□□□□ -2.24
USP54-202ENST00000413442 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
USP54-202ENST00000413442 MUC16Q8WXI7 14507 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 71.8 ms