RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 KRTAP12-1P59990 96 aa4.33□□□□□ -1.72
NEDD8-202ENST00000396828 KRTAP12-2P59991 146 aa4.31□□□□□ -1.72
NEDD8-202ENST00000396828 KRTAP4-11Q9BYQ6 195 aa4.31□□□□□ -1.72
NEDD8-202ENST00000396828 CAMK2N1Q7Z7J9 78 aa4.29□□□□□ -1.72
NEDD8-202ENST00000396828 LCE1AQ5T7P2 110 aa4.28□□□□□ -1.72
NEDD8-202ENST00000396828 KRTAP8-1Q8IUC2 63 aa4.27□□□□□ -1.73
NEDD8-202ENST00000396828 A0A0A0MQY5 61 aa4.26□□□□□ -1.73
NEDD8-202ENST00000396828 PRO2289Q9P1D8 64 aa4.25□□□□□ -1.73
NEDD8-202ENST00000396828 KRTAP4-2Q9BYR5 136 aa4.23□□□□□ -1.73
NEDD8-202ENST00000396828 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
NEDD8-202ENST00000396828 KRTAP2-1Q9BYU5 128 aa4.23□□□□□ -1.73
NEDD8-202ENST00000396828 SPRR2DP22532 72 aa4.19□□□□□ -1.74
NEDD8-202ENST00000396828 PRO0628Q9UI54 55 aa4.17□□□□□ -1.74
NEDD8-202ENST00000396828 KRTAP10-7P60409 375 aaPredicted RBP4.16□□□□□ -1.74
NEDD8-202ENST00000396828 PMAIP1Q13794 54 aa4.12□□□□□ -1.75
NEDD8-202ENST00000396828 KRTAP10-12P60413 245 aa4.1□□□□□ -1.75
NEDD8-202ENST00000396828 ROMO1P60602 79 aa4.1□□□□□ -1.75
NEDD8-202ENST00000396828 C10orf95Q9H7T3 257 aa4.1□□□□□ -1.75
NEDD8-202ENST00000396828 TNP1P09430 55 aa4.05□□□□□ -1.76
NEDD8-202ENST00000396828 KRTAP25-1Q3LHN0 102 aa4.02□□□□□ -1.77
NEDD8-202ENST00000396828 DSTQ03001 7570 aaKnown RBP3.96□□□□□ -1.78
NEDD8-202ENST00000396828 GPR98Q8WXG9 6306 aa3.9□□□□□ -1.79
NEDD8-202ENST00000396828 KRTAP19-7Q3SYF9 63 aa3.89□□□□□ -1.79
NEDD8-202ENST00000396828 KTN1-AS1Q86SY8 53 aa3.89□□□□□ -1.79
NEDD8-202ENST00000396828 PP632Q6XCG6 107 aa3.88□□□□□ -1.79
NEDD8-202ENST00000396828 LCE3AQ5TA76 89 aa3.86□□□□□ -1.79
NEDD8-202ENST00000396828 MT1EP04732 61 aa3.85□□□□□ -1.79
NEDD8-202ENST00000396828 KRTAP19-3Q7Z4W3 81 aa3.83□□□□□ -1.8
NEDD8-202ENST00000396828 PRAC1Q96KF2 57 aa3.81□□□□□ -1.8
NEDD8-202ENST00000396828 HMCN1Q96RW7 5635 aa3.74□□□□□ -1.81
NEDD8-202ENST00000396828 KRTAP19-5Q3LI72 72 aa3.74□□□□□ -1.81
NEDD8-202ENST00000396828 KRTAP12-3P60328 96 aa3.73□□□□□ -1.81
NEDD8-202ENST00000396828 MT1GP13640 62 aa3.71□□□□□ -1.82
NEDD8-202ENST00000396828 MT4P47944 62 aa3.71□□□□□ -1.82
NEDD8-202ENST00000396828 MT1MQ8N339 61 aa3.68□□□□□ -1.82
NEDD8-202ENST00000396828 KRTAP4-3Q9BYR4 195 aa3.67□□□□□ -1.82
NEDD8-202ENST00000396828 MT1LQ93083 61 aa3.65□□□□□ -1.83
NEDD8-202ENST00000396828 AHNAK2Q8IVF2 5795 aa3.65□□□□□ -1.83
NEDD8-202ENST00000396828 KRTAP5-4Q6L8H1 288 aa3.61□□□□□ -1.83
NEDD8-202ENST00000396828 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
NEDD8-202ENST00000396828 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
NEDD8-202ENST00000396828 MT3P25713 68 aa3.47□□□□□ -1.85
NEDD8-202ENST00000396828 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
NEDD8-202ENST00000396828 KRTAP5-7Q6L8G8 165 aa3.45□□□□□ -1.86
NEDD8-202ENST00000396828 KRTAP20-2Q3LI61 65 aa3.42□□□□□ -1.86
NEDD8-202ENST00000396828 KRTAP5-5Q701N2 237 aaPredicted RBP3.4□□□□□ -1.87
NEDD8-202ENST00000396828 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
NEDD8-202ENST00000396828 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
NEDD8-202ENST00000396828 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
NEDD8-202ENST00000396828 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
NEDD8-202ENST00000396828 KRTAP9-6A8MVA2 160 aa3.22□□□□□ -1.89
NEDD8-202ENST00000396828 LUZP6Q538Z0 58 aa3.22□□□□□ -1.89
NEDD8-202ENST00000396828 LCE1FQ5T754 118 aa3.2□□□□□ -1.9
NEDD8-202ENST00000396828 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
NEDD8-202ENST00000396828 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
NEDD8-202ENST00000396828 KRTAP5-8O75690 187 aa3.08□□□□□ -1.92
NEDD8-202ENST00000396828 MT1AP04731 61 aa3.08□□□□□ -1.92
NEDD8-202ENST00000396828 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
NEDD8-202ENST00000396828 OBSCNQ5VST9 7968 aa3.02□□□□□ -1.93
NEDD8-202ENST00000396828 MUC5ACP98088 5654 aa3.02□□□□□ -1.93
NEDD8-202ENST00000396828 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
NEDD8-202ENST00000396828 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
NEDD8-202ENST00000396828 AHNAKQ09666 5890 aaKnown RBP3□□□□□ -1.93
NEDD8-202ENST00000396828 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
NEDD8-202ENST00000396828 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
NEDD8-202ENST00000396828 LCE3EQ5T5B0 92 aa2.72□□□□□ -1.97
NEDD8-202ENST00000396828 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.72□□□□□ -1.97
NEDD8-202ENST00000396828 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
NEDD8-202ENST00000396828 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
NEDD8-202ENST00000396828 INE1O15225 51 aa2.5□□□□□ -2.01
NEDD8-202ENST00000396828 LCE1CQ5T751 118 aa2.44□□□□□ -2.02
NEDD8-202ENST00000396828 KRTAP4-4Q9BYR3 166 aa2.26□□□□□ -2.05
NEDD8-202ENST00000396828 PRM1P04553 51 aa2.11□□□□□ -2.07
NEDD8-202ENST00000396828 PHGR1C9JFL3 82 aa2.09□□□□□ -2.07
NEDD8-202ENST00000396828 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
NEDD8-202ENST00000396828 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
NEDD8-202ENST00000396828 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
NEDD8-202ENST00000396828 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 5.7 ms