RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 SPATA8Q6RVD6 105 aa3.26□□□□□ -1.89
VPS13A-201ENST00000355766 BRK1Q8WUW1 75 aa3.25□□□□□ -1.89
VPS13A-201ENST00000355766 MDN1Q9NU22 5596 aa3.25□□□□□ -1.89
VPS13A-201ENST00000355766 M0QZ58 72 aa3.24□□□□□ -1.89
VPS13A-201ENST00000355766 MIR22HGQ0VDD5 57 aa3.24□□□□□ -1.89
VPS13A-201ENST00000355766 CRIPTQ9P021 101 aa3.23□□□□□ -1.89
VPS13A-201ENST00000355766 ADM2Q7Z4H4 148 aa3.22□□□□□ -1.89
VPS13A-201ENST00000355766 KRTAP5-5Q701N2 237 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-201ENST00000355766 KMT2DO14686 5537 aa3.19□□□□□ -1.9
VPS13A-201ENST00000355766 P0C880 135 aa3.19□□□□□ -1.9
VPS13A-201ENST00000355766 KRTAP2-3P0C7H8 128 aa3.17□□□□□ -1.9
VPS13A-201ENST00000355766 KRTAP2-4Q9BYR9 128 aa3.17□□□□□ -1.9
VPS13A-201ENST00000355766 A6NN06 94 aa3.15□□□□□ -1.91
VPS13A-201ENST00000355766 K7ERS5 55 aa3.15□□□□□ -1.91
VPS13A-201ENST00000355766 R4GN34 69 aa3.15□□□□□ -1.91
VPS13A-201ENST00000355766 KRTAP13-4Q3LI77 160 aa3.12□□□□□ -1.91
VPS13A-201ENST00000355766 GPR98Q8WXG9 6306 aa3.09□□□□□ -1.91
VPS13A-201ENST00000355766 PMAIP1Q13794 54 aa3.09□□□□□ -1.91
VPS13A-201ENST00000355766 SPRR2GQ9BYE4 73 aa3.08□□□□□ -1.92
VPS13A-201ENST00000355766 KRTAP12-1P59990 96 aa3.05□□□□□ -1.92
VPS13A-201ENST00000355766 A0A0D9SG42 100 aa3.04□□□□□ -1.92
VPS13A-201ENST00000355766 KRTAP2-1Q9BYU5 128 aa3.04□□□□□ -1.92
VPS13A-201ENST00000355766 MT1BP07438 61 aa3.03□□□□□ -1.92
VPS13A-201ENST00000355766 LCE1CQ5T751 118 aa3.03□□□□□ -1.92
VPS13A-201ENST00000355766 LCE1BQ5T7P3 118 aa3.03□□□□□ -1.92
VPS13A-201ENST00000355766 SPRR2EP22531 72 aa3.02□□□□□ -1.93
VPS13A-201ENST00000355766 SPRR2BP35325 72 aa3.02□□□□□ -1.93
VPS13A-201ENST00000355766 SPRR2AP35326 72 aa3.02□□□□□ -1.93
VPS13A-201ENST00000355766 KTN1-AS1Q86SY8 53 aa3.02□□□□□ -1.93
VPS13A-201ENST00000355766 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
VPS13A-201ENST00000355766 LINC01554Q52M75 96 aa3□□□□□ -1.93
VPS13A-201ENST00000355766 SPINT4Q6UDR6 99 aa2.99□□□□□ -1.93
VPS13A-201ENST00000355766 ROMO1P60602 79 aa2.98□□□□□ -1.93
VPS13A-201ENST00000355766 SPRR2FQ96RM1 72 aa2.98□□□□□ -1.93
VPS13A-201ENST00000355766 PLAC4Q8WY50 150 aa2.96□□□□□ -1.94
VPS13A-201ENST00000355766 CAMK2N1Q7Z7J9 78 aa2.94□□□□□ -1.94
VPS13A-201ENST00000355766 SPRR2DP22532 72 aa2.93□□□□□ -1.94
VPS13A-201ENST00000355766 KRTAP25-1Q3LHN0 102 aa2.9□□□□□ -1.95
VPS13A-201ENST00000355766 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
VPS13A-201ENST00000355766 KRTAP8-1Q8IUC2 63 aa2.86□□□□□ -1.95
VPS13A-201ENST00000355766 C10orf95Q9H7T3 257 aa2.86□□□□□ -1.95
VPS13A-201ENST00000355766 PP632Q6XCG6 107 aa2.85□□□□□ -1.95
VPS13A-201ENST00000355766 TNP1P09430 55 aa2.84□□□□□ -1.95
VPS13A-201ENST00000355766 DSTQ03001 7570 aaKnown RBP2.84□□□□□ -1.96
VPS13A-201ENST00000355766 MT1XP80297 61 aa2.81□□□□□ -1.96
VPS13A-201ENST00000355766 LCE3DQ9BYE3 92 aa2.79□□□□□ -1.96
VPS13A-201ENST00000355766 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
VPS13A-201ENST00000355766 HMCN1Q96RW7 5635 aa2.73□□□□□ -1.97
VPS13A-201ENST00000355766 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
VPS13A-201ENST00000355766 KRTAP5-10Q6L8G5 202 aa2.65□□□□□ -1.99
VPS13A-201ENST00000355766 KRTAP12-3P60328 96 aa2.59□□□□□ -1.99
VPS13A-201ENST00000355766 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -1.99
VPS13A-201ENST00000355766 MT4P47944 62 aa2.57□□□□□ -2
VPS13A-201ENST00000355766 KRTAP19-5Q3LI72 72 aa2.52□□□□□ -2.01
VPS13A-201ENST00000355766 KRTAP19-7Q3SYF9 63 aa2.51□□□□□ -2.01
VPS13A-201ENST00000355766 KRTAP19-3Q7Z4W3 81 aa2.51□□□□□ -2.01
VPS13A-201ENST00000355766 SPRR5A0A1B0GTR4 108 aa2.5□□□□□ -2.01
VPS13A-201ENST00000355766 MT1EP04732 61 aa2.48□□□□□ -2.01
VPS13A-201ENST00000355766 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
VPS13A-201ENST00000355766 MT1LQ93083 61 aa2.42□□□□□ -2.02
VPS13A-201ENST00000355766 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
VPS13A-201ENST00000355766 MT1GP13640 62 aa2.4□□□□□ -2.03
VPS13A-201ENST00000355766 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
VPS13A-201ENST00000355766 MT1MQ8N339 61 aa2.37□□□□□ -2.03
VPS13A-201ENST00000355766 KRTAP20-2Q3LI61 65 aa2.35□□□□□ -2.03
VPS13A-201ENST00000355766 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
VPS13A-201ENST00000355766 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-201ENST00000355766 KRTAP12-4P60329 112 aa2.22□□□□□ -2.05
VPS13A-201ENST00000355766 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
VPS13A-201ENST00000355766 SYNE1Q8NF91 8797 aaKnown RBP2.18□□□□□ -2.06
VPS13A-201ENST00000355766 MT1AP04731 61 aa2.09□□□□□ -2.07
VPS13A-201ENST00000355766 INE1O15225 51 aa2□□□□□ -2.09
VPS13A-201ENST00000355766 KRTAP6-1Q3LI64 71 aa2□□□□□ -2.09
VPS13A-201ENST00000355766 KRTAP6-2Q3LI66 62 aa1.93□□□□□ -2.1
VPS13A-201ENST00000355766 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
VPS13A-201ENST00000355766 PRM1P04553 51 aa1.51□□□□□ -2.17
VPS13A-201ENST00000355766 KRTAP21-1Q3LI58 79 aa1.19□□□□□ -2.22
VPS13A-201ENST00000355766 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 431.3 ms