RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
CLN3-201ENST00000333496 SPRR2DP22532 72 aa6.01□□□□□ -1.45
CLN3-201ENST00000333496 H3BS24 57 aa5.96□□□□□ -1.45
CLN3-201ENST00000333496 KRTAP19-7Q3SYF9 63 aa5.96□□□□□ -1.46
CLN3-201ENST00000333496 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
CLN3-201ENST00000333496 TNP1P09430 55 aa5.92□□□□□ -1.46
CLN3-201ENST00000333496 KRTAP2-2Q9BYT5 123 aa5.89□□□□□ -1.47
CLN3-201ENST00000333496 KRTAP2-1Q9BYU5 128 aa5.89□□□□□ -1.47
CLN3-201ENST00000333496 MT1EP04732 61 aa5.88□□□□□ -1.47
CLN3-201ENST00000333496 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
CLN3-201ENST00000333496 KRTAP19-5Q3LI72 72 aa5.82□□□□□ -1.48
CLN3-201ENST00000333496 LCE5AQ5TCM9 118 aa5.82□□□□□ -1.48
CLN3-201ENST00000333496 NDUFAF8A1L188 74 aa5.81□□□□□ -1.48
CLN3-201ENST00000333496 KRTAP19-3Q7Z4W3 81 aa5.81□□□□□ -1.48
CLN3-201ENST00000333496 DSTQ03001 7570 aaKnown RBP5.75□□□□□ -1.49
CLN3-201ENST00000333496 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
CLN3-201ENST00000333496 MT1GP13640 62 aa5.68□□□□□ -1.5
CLN3-201ENST00000333496 MT1LQ93083 61 aa5.64□□□□□ -1.51
CLN3-201ENST00000333496 LUZP6Q538Z0 58 aa5.63□□□□□ -1.51
CLN3-201ENST00000333496 MT1MQ8N339 61 aa5.59□□□□□ -1.51
CLN3-201ENST00000333496 SPRR5A0A1B0GTR4 108 aa5.55□□□□□ -1.52
CLN3-201ENST00000333496 A0A0A0MQY5 61 aa5.52□□□□□ -1.53
CLN3-201ENST00000333496 KRTAP12-3P60328 96 aa5.51□□□□□ -1.53
CLN3-201ENST00000333496 KRTAP4-3Q9BYR4 195 aa5.48□□□□□ -1.53
CLN3-201ENST00000333496 KRTAP4-9Q9BYQ8 210 aa5.43□□□□□ -1.54
CLN3-201ENST00000333496 KRTAP4-7Q9BYR0 210 aa5.41□□□□□ -1.54
CLN3-201ENST00000333496 LCE4AQ5TA78 99 aa5.32□□□□□ -1.56
CLN3-201ENST00000333496 LCE1DQ5T752 114 aa5.31□□□□□ -1.56
CLN3-201ENST00000333496 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
CLN3-201ENST00000333496 MT4P47944 62 aa5.26□□□□□ -1.57
CLN3-201ENST00000333496 KRTAP19-4Q3LI73 84 aa5.18□□□□□ -1.58
CLN3-201ENST00000333496 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
CLN3-201ENST00000333496 KRTAP4-6Q9BYQ5 205 aa5.15□□□□□ -1.58
CLN3-201ENST00000333496 KRTAP5-5Q701N2 237 aaPredicted RBP5.14□□□□□ -1.59
CLN3-201ENST00000333496 LOC100996750A0A140TA64 210 aa5.12□□□□□ -1.59
CLN3-201ENST00000333496 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
CLN3-201ENST00000333496 GPR98Q8WXG9 6306 aa5.06□□□□□ -1.6
CLN3-201ENST00000333496 SYNE1Q8NF91 8797 aaKnown RBP4.98□□□□□ -1.61
CLN3-201ENST00000333496 KRTAP20-2Q3LI61 65 aa4.97□□□□□ -1.61
CLN3-201ENST00000333496 AHNAK2Q8IVF2 5795 aa4.96□□□□□ -1.62
CLN3-201ENST00000333496 KRTAP12-4P60329 112 aa4.92□□□□□ -1.62
CLN3-201ENST00000333496 KRTAP5-10Q6L8G5 202 aa4.88□□□□□ -1.63
CLN3-201ENST00000333496 INE1O15225 51 aa4.86□□□□□ -1.63
CLN3-201ENST00000333496 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
CLN3-201ENST00000333496 KRTAP5-3Q6L8H2 238 aa4.83□□□□□ -1.64
CLN3-201ENST00000333496 MT1AP04731 61 aa4.79□□□□□ -1.64
CLN3-201ENST00000333496 KRTAP6-1Q3LI64 71 aa4.79□□□□□ -1.64
CLN3-201ENST00000333496 KRTAP5-7Q6L8G8 165 aa4.65□□□□□ -1.66
CLN3-201ENST00000333496 KRTAP5-2Q701N4 177 aa4.64□□□□□ -1.67
CLN3-201ENST00000333496 KRTAP9-4Q9BYQ2 154 aa4.63□□□□□ -1.67
CLN3-201ENST00000333496 KRTAP6-2Q3LI66 62 aa4.54□□□□□ -1.68
CLN3-201ENST00000333496 KRTAP4-11Q9BYQ6 195 aa4.5□□□□□ -1.69
CLN3-201ENST00000333496 OBSCNQ5VST9 7968 aa4.44□□□□□ -1.7
CLN3-201ENST00000333496 KRTAP5-8O75690 187 aa4.36□□□□□ -1.71
CLN3-201ENST00000333496 MT3P25713 68 aa4.36□□□□□ -1.71
CLN3-201ENST00000333496 KRTAP5-1Q6L8H4 278 aa4.16□□□□□ -1.74
CLN3-201ENST00000333496 KRTAP9-9Q9BYP9 154 aa4.07□□□□□ -1.76
CLN3-201ENST00000333496 MUC5BQ9HC84 5762 aaPredicted RBP4.02□□□□□ -1.77
CLN3-201ENST00000333496 MUC5ACP98088 5654 aa3.99□□□□□ -1.77
CLN3-201ENST00000333496 LCE1EQ5T753 118 aa3.99□□□□□ -1.77
CLN3-201ENST00000333496 AHNAKQ09666 5890 aaKnown RBP3.94□□□□□ -1.78
CLN3-201ENST00000333496 LCE3DQ9BYE3 92 aa3.83□□□□□ -1.8
CLN3-201ENST00000333496 LCE3EQ5T5B0 92 aa3.79□□□□□ -1.8
CLN3-201ENST00000333496 KRTAP4-2Q9BYR5 136 aa3.79□□□□□ -1.8
CLN3-201ENST00000333496 LCE1BQ5T7P3 118 aa3.74□□□□□ -1.81
CLN3-201ENST00000333496 LCE1CQ5T751 118 aa3.71□□□□□ -1.82
CLN3-201ENST00000333496 PRM1P04553 51 aa3.52□□□□□ -1.85
CLN3-201ENST00000333496 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.4□□□□□ -1.87
CLN3-201ENST00000333496 KRTAP4-12Q9BQ66 201 aa3.38□□□□□ -1.87
CLN3-201ENST00000333496 KRTAP5-11Q6L8G4 156 aa3.35□□□□□ -1.87
CLN3-201ENST00000333496 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
CLN3-201ENST00000333496 KRTAP21-2Q3LI59 83 aa3.16□□□□□ -1.9
CLN3-201ENST00000333496 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
CLN3-201ENST00000333496 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
CLN3-201ENST00000333496 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
CLN3-201ENST00000333496 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
CLN3-201ENST00000333496 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 37.6 ms