RNA–Protein interactions for RNA: ENST00000639300.1

SCARB2-216, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 4,554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-216ENST00000639300 DNAH5Q8TE73 4624 aa6.77□□□□□ -1.33
SCARB2-216ENST00000639300 DNAH1Q9P2D7 4330 aa6.7□□□□□ -1.34
SCARB2-216ENST00000639300 PRO2289Q9P1D8 64 aa6.67□□□□□ -1.34
SCARB2-216ENST00000639300 FAT1Q14517 4588 aa6.66□□□□□ -1.34
SCARB2-216ENST00000639300 PRKDCP78527 4128 aaKnown RBP6.64□□□□□ -1.35
SCARB2-216ENST00000639300 STARD9Q9P2P6 4700 aa6.64□□□□□ -1.35
SCARB2-216ENST00000639300 ANK2Q01484 3957 aa6.55□□□□□ -1.36
SCARB2-216ENST00000639300 VPS13DQ5THJ4 4388 aa6.53□□□□□ -1.36
SCARB2-216ENST00000639300 LRP1BQ9NZR2 4599 aa6.51□□□□□ -1.37
SCARB2-216ENST00000639300 LYSTQ99698 3801 aa6.49□□□□□ -1.37
SCARB2-216ENST00000639300 DYNC1H1Q14204 4646 aaKnown RBP6.48□□□□□ -1.37
SCARB2-216ENST00000639300 KMT2AQ03164 3969 aa6.47□□□□□ -1.37
SCARB2-216ENST00000639300 DNAH8Q96JB1 4490 aa6.47□□□□□ -1.37
SCARB2-216ENST00000639300 DNAH17Q9UFH2 4485 aa6.46□□□□□ -1.38
SCARB2-216ENST00000639300 RYR1P21817 5038 aa6.45□□□□□ -1.38
SCARB2-216ENST00000639300 LORP23490 312 aaPredicted RBP6.45□□□□□ -1.38
SCARB2-216ENST00000639300 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
SCARB2-216ENST00000639300 MYCBP2O75592 4640 aa6.42□□□□□ -1.38
SCARB2-216ENST00000639300 DNAH2Q9P225 4427 aa6.39□□□□□ -1.39
SCARB2-216ENST00000639300 ALMS1Q8TCU4 4167 aa6.35□□□□□ -1.39
SCARB2-216ENST00000639300 KRTAP15-1Q3LI76 137 aa6.34□□□□□ -1.39
SCARB2-216ENST00000639300 DNAH3Q8TD57 4116 aa6.3□□□□□ -1.4
SCARB2-216ENST00000639300 KRTAP4-1Q9BYQ7 146 aa6.28□□□□□ -1.4
SCARB2-216ENST00000639300 SACSQ9NZJ4 4579 aa6.28□□□□□ -1.4
SCARB2-216ENST00000639300 CMYA5Q8N3K9 4069 aa6.26□□□□□ -1.41
SCARB2-216ENST00000639300 FAT3Q8TDW7 4589 aa6.25□□□□□ -1.41
SCARB2-216ENST00000639300 VPS13BQ7Z7G8 4022 aa6.25□□□□□ -1.41
SCARB2-216ENST00000639300 FRAS1Q86XX4 4008 aa6.23□□□□□ -1.41
SCARB2-216ENST00000639300 RYR3Q15413 4870 aa6.23□□□□□ -1.41
SCARB2-216ENST00000639300 DNAH7Q8WXX0 4024 aa6.21□□□□□ -1.41
SCARB2-216ENST00000639300 LRP1Q07954 4544 aaKnown RBP6.21□□□□□ -1.42
SCARB2-216ENST00000639300 DYNC2H1Q8NCM8 4307 aaKnown RBP6.17□□□□□ -1.42
SCARB2-216ENST00000639300 DNAH6Q9C0G6 4158 aa6.16□□□□□ -1.42
SCARB2-216ENST00000639300 KRTAP10-12P60413 245 aa6.16□□□□□ -1.42
SCARB2-216ENST00000639300 APOBP04114 4563 aaKnown RBP6.14□□□□□ -1.43
SCARB2-216ENST00000639300 FAT2Q9NYQ8 4349 aa6.14□□□□□ -1.43
SCARB2-216ENST00000639300 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
SCARB2-216ENST00000639300 HECTD4Q9Y4D8 3996 aa6.1□□□□□ -1.43
SCARB2-216ENST00000639300 LCE3AQ5TA76 89 aa6.09□□□□□ -1.43
SCARB2-216ENST00000639300 HYDINQ4G0P3 5121 aa6.08□□□□□ -1.44
SCARB2-216ENST00000639300 KRTAP12-3P60328 96 aa6.06□□□□□ -1.44
SCARB2-216ENST00000639300 PKHD1P08F94 4074 aa6.01□□□□□ -1.45
SCARB2-216ENST00000639300 LRP2P98164 4655 aa5.96□□□□□ -1.46
SCARB2-216ENST00000639300 KRTAP23-1A1A580 65 aa5.96□□□□□ -1.46
SCARB2-216ENST00000639300 MT1HP80294 61 aa5.91□□□□□ -1.46
SCARB2-216ENST00000639300 KMT2CQ8NEZ4 4911 aaKnown RBP5.91□□□□□ -1.46
SCARB2-216ENST00000639300 RYR2Q92736 4967 aa5.91□□□□□ -1.46
SCARB2-216ENST00000639300 HERC2O95714 4834 aa5.91□□□□□ -1.46
SCARB2-216ENST00000639300 CRCT1Q9UGL9 99 aa5.89□□□□□ -1.47
SCARB2-216ENST00000639300 MT2AP02795 61 aa5.88□□□□□ -1.47
SCARB2-216ENST00000639300 SPRR2GQ9BYE4 73 aa5.82□□□□□ -1.48
SCARB2-216ENST00000639300 MT1FP04733 61 aa5.81□□□□□ -1.48
SCARB2-216ENST00000639300 INE1O15225 51 aa5.74□□□□□ -1.49
SCARB2-216ENST00000639300 HSPG2P98160 4391 aa5.7□□□□□ -1.5
SCARB2-216ENST00000639300 PKD1P98161 4303 aa5.68□□□□□ -1.5
SCARB2-216ENST00000639300 KRTAP19-1Q8IUB9 90 aa5.64□□□□□ -1.51
SCARB2-216ENST00000639300 LPAP08519 4548 aa5.62□□□□□ -1.51
SCARB2-216ENST00000639300 PCLOQ9Y6V0 5065 aa5.61□□□□□ -1.51
SCARB2-216ENST00000639300 KRTAP8-1Q8IUC2 63 aa5.6□□□□□ -1.51
SCARB2-216ENST00000639300 EPPK1P58107 5090 aaKnown RBP5.57□□□□□ -1.52
SCARB2-216ENST00000639300 BIRC6Q9NR09 4857 aa5.53□□□□□ -1.52
SCARB2-216ENST00000639300 KRTAP19-5Q3LI72 72 aa5.5□□□□□ -1.53
SCARB2-216ENST00000639300 ABCA13Q86UQ4 5058 aa5.48□□□□□ -1.53
SCARB2-216ENST00000639300 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
SCARB2-216ENST00000639300 KRTAP19-8Q3LI54 63 aa5.45□□□□□ -1.54
SCARB2-216ENST00000639300 KRTAP10-7P60409 375 aaPredicted RBP5.45□□□□□ -1.54
SCARB2-216ENST00000639300 LCE2CQ5TA81 110 aa5.44□□□□□ -1.54
SCARB2-216ENST00000639300 HERC1Q15751 4861 aa5.41□□□□□ -1.54
SCARB2-216ENST00000639300 KRTAP9-8Q9BYQ0 159 aa5.41□□□□□ -1.54
SCARB2-216ENST00000639300 MT1BP07438 61 aa5.38□□□□□ -1.55
SCARB2-216ENST00000639300 MT1XP80297 61 aa5.38□□□□□ -1.55
SCARB2-216ENST00000639300 PKHD1L1Q86WI1 4243 aa5.38□□□□□ -1.55
SCARB2-216ENST00000639300 TNXBP22105 4242 aa5.37□□□□□ -1.55
SCARB2-216ENST00000639300 LCE3CQ5T5A8 94 aa5.35□□□□□ -1.55
SCARB2-216ENST00000639300 FSIP2Q5CZC0 6907 aa5.32□□□□□ -1.56
SCARB2-216ENST00000639300 KRTAP19-2Q3LHN2 52 aa5.31□□□□□ -1.56
SCARB2-216ENST00000639300 RNF213Q63HN8 5207 aa5.29□□□□□ -1.56
SCARB2-216ENST00000639300 MUC2Q02817 5179 aa5.28□□□□□ -1.56
SCARB2-216ENST00000639300 SPRR2FQ96RM1 72 aa5.27□□□□□ -1.57
SCARB2-216ENST00000639300 MUC17Q685J3 4493 aa5.26□□□□□ -1.57
SCARB2-216ENST00000639300 UBR4Q5T4S7 5183 aa5.24□□□□□ -1.57
SCARB2-216ENST00000639300 KRTAP4-8A0A0G2JLE6 195 aa5.24□□□□□ -1.57
SCARB2-216ENST00000639300 KRTAP4-8Q9BYQ9 185 aa5.24□□□□□ -1.57
SCARB2-216ENST00000639300 KRTAP9-3Q9BYQ3 159 aa5.23□□□□□ -1.57
SCARB2-216ENST00000639300 FAT4Q6V0I7 4981 aa5.18□□□□□ -1.58
SCARB2-216ENST00000639300 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
SCARB2-216ENST00000639300 SPRR5A0A1B0GTR4 108 aa5.12□□□□□ -1.59
SCARB2-216ENST00000639300 FLGP20930 4061 aaPredicted RBP5.11□□□□□ -1.59
SCARB2-216ENST00000639300 LCE2BO14633 110 aa5.06□□□□□ -1.6
SCARB2-216ENST00000639300 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
SCARB2-216ENST00000639300 MT1GP13640 62 aa4.98□□□□□ -1.61
SCARB2-216ENST00000639300 KRTAP4-7Q9BYR0 210 aa4.97□□□□□ -1.61
SCARB2-216ENST00000639300 HMCN2Q8NDA2 5059 aa4.97□□□□□ -1.61
SCARB2-216ENST00000639300 OBSCNQ5VST9 7968 aa4.9□□□□□ -1.62
SCARB2-216ENST00000639300 LCE3BQ5TA77 95 aa4.89□□□□□ -1.63
SCARB2-216ENST00000639300 SPRR2EP22531 72 aa4.81□□□□□ -1.64
SCARB2-216ENST00000639300 SPRR2BP35325 72 aa4.81□□□□□ -1.64
SCARB2-216ENST00000639300 SPRR2AP35326 72 aa4.81□□□□□ -1.64
SCARB2-216ENST00000639300 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
SCARB2-216ENST00000639300 MT1LQ93083 61 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms