RNA–Protein interactions for RNA: ENST00000639244.1

SCN3A-209, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5 BASIC

Gene SCN3A, Length 8,854 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-209ENST00000639244 KRTAP19-4Q3LI73 84 aa1.89□□□□□ -2.11
SCN3A-209ENST00000639244 KRTAP10-10P60014 251 aa1.89□□□□□ -2.11
SCN3A-209ENST00000639244 HECTD4Q9Y4D8 3996 aa1.88□□□□□ -2.11
SCN3A-209ENST00000639244 LCE2BO14633 110 aa1.85□□□□□ -2.11
SCN3A-209ENST00000639244 LORP23490 312 aaPredicted RBP1.84□□□□□ -2.11
SCN3A-209ENST00000639244 ANK3Q12955 4377 aaKnown RBP1.81□□□□□ -2.12
SCN3A-209ENST00000639244 MT3P25713 68 aa1.79□□□□□ -2.12
SCN3A-209ENST00000639244 FRAS1Q86XX4 4008 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 CMYA5Q8N3K9 4069 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 CRCT1Q9UGL9 99 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 VPS13BQ7Z7G8 4022 aa1.76□□□□□ -2.13
SCN3A-209ENST00000639244 DNAH7Q8WXX0 4024 aa1.75□□□□□ -2.13
SCN3A-209ENST00000639244 HUWE1Q7Z6Z7 4374 aaKnown RBP1.74□□□□□ -2.13
SCN3A-209ENST00000639244 KMT2AQ03164 3969 aa1.71□□□□□ -2.14
SCN3A-209ENST00000639244 DNAH10Q8IVF4 4471 aa1.71□□□□□ -2.14
SCN3A-209ENST00000639244 KRTAP2-2Q9BYT5 123 aa1.69□□□□□ -2.14
SCN3A-209ENST00000639244 KRTAP21-3Q3LHN1 58 aa1.68□□□□□ -2.14
SCN3A-209ENST00000639244 DNAH2Q9P225 4427 aa1.65□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP4-5Q9BYR2 181 aa1.65□□□□□ -2.15
SCN3A-209ENST00000639244 FLGP20930 4061 aaPredicted RBP1.64□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP10-12P60413 245 aa1.63□□□□□ -2.15
SCN3A-209ENST00000639244 DNAH1Q9P2D7 4330 aa1.63□□□□□ -2.15
SCN3A-209ENST00000639244 LCE3AQ5TA76 89 aa1.62□□□□□ -2.15
SCN3A-209ENST00000639244 LCE5AQ5TCM9 118 aa1.62□□□□□ -2.15
SCN3A-209ENST00000639244 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP12-4P60329 112 aa1.6□□□□□ -2.15
SCN3A-209ENST00000639244 MT1HL1P0DM35 61 aa1.59□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP10-5P60370 271 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP12-3P60328 96 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH9Q9NYC9 4486 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 PRKDCP78527 4128 aaKnown RBP1.57□□□□□ -2.16
SCN3A-209ENST00000639244 VPS13DQ5THJ4 4388 aa1.57□□□□□ -2.16
SCN3A-209ENST00000639244 PLECQ15149 4684 aaKnown RBP1.56□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH8Q96JB1 4490 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 STARD9Q9P2P6 4700 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP8-1Q8IUC2 63 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH11Q96DT5 4516 aa1.55□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP10-4P60372 401 aaPredicted RBP1.52□□□□□ -2.17
SCN3A-209ENST00000639244 DNAH17Q9UFH2 4485 aa1.52□□□□□ -2.17
SCN3A-209ENST00000639244 RYR1P21817 5038 aa1.52□□□□□ -2.17
SCN3A-209ENST00000639244 DNAH5Q8TE73 4624 aa1.51□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1AQ5T7P2 110 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 TNXBP22105 4242 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 HSPG2P98160 4391 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP4-1Q9BYQ7 146 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-1Q9BYU5 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP6-3Q3LI67 103 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 FAT2Q9NYQ8 4349 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1EQ5T753 118 aa1.48□□□□□ -2.17
SCN3A-209ENST00000639244 PKHD1P08F94 4074 aa1.48□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1FQ5T754 118 aa1.47□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP9-6A0A140TA67 174 aa1.47□□□□□ -2.17
SCN3A-209ENST00000639244 MYCBP2O75592 4640 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 DYNC2H1Q8NCM8 4307 aaKnown RBP1.46□□□□□ -2.18
SCN3A-209ENST00000639244 FAT3Q8TDW7 4589 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 LCE3CQ5T5A8 94 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 LRP1BQ9NZR2 4599 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP5-2Q701N4 177 aa1.45□□□□□ -2.18
SCN3A-209ENST00000639244 FAT1Q14517 4588 aa1.45□□□□□ -2.18
SCN3A-209ENST00000639244 APOBP04114 4563 aaKnown RBP1.44□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP19-5Q3LI72 72 aa1.44□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP9-4Q9BYQ2 154 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 LCE1DQ5T752 114 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 LPAP08519 4548 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 MT1HP80294 61 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP10-7P60409 375 aaPredicted RBP1.42□□□□□ -2.18
SCN3A-209ENST00000639244 SPRR2FQ96RM1 72 aa1.41□□□□□ -2.18
SCN3A-209ENST00000639244 DNHD1Q96M86 4753 aa1.41□□□□□ -2.18
SCN3A-209ENST00000639244 LRP1Q07954 4544 aaKnown RBP1.4□□□□□ -2.18
SCN3A-209ENST00000639244 MT1FP04733 61 aa1.4□□□□□ -2.19
SCN3A-209ENST00000639244 LCE3BQ5TA77 95 aa1.39□□□□□ -2.19
SCN3A-209ENST00000639244 MT2AP02795 61 aa1.39□□□□□ -2.19
SCN3A-209ENST00000639244 SACSQ9NZJ4 4579 aa1.38□□□□□ -2.19
SCN3A-209ENST00000639244 PKD1P98161 4303 aa1.38□□□□□ -2.19
SCN3A-209ENST00000639244 PKHD1L1Q86WI1 4243 aa1.37□□□□□ -2.19
SCN3A-209ENST00000639244 DYNC1H1Q14204 4646 aaKnown RBP1.37□□□□□ -2.19
SCN3A-209ENST00000639244 MT1GP13640 62 aa1.35□□□□□ -2.19
SCN3A-209ENST00000639244 SPRR2GQ9BYE4 73 aa1.35□□□□□ -2.19
SCN3A-209ENST00000639244 PRM1P04553 51 aa1.34□□□□□ -2.19
SCN3A-209ENST00000639244 KRTAP4-8A0A0G2JLE6 195 aa1.33□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP4-8Q9BYQ9 185 aa1.33□□□□□ -2.2
SCN3A-209ENST00000639244 HYDINQ4G0P3 5121 aa1.32□□□□□ -2.2
SCN3A-209ENST00000639244 LRP2P98164 4655 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 LCE3EQ5T5B0 92 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP4-7Q9BYR0 210 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2EP22531 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2BP35325 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2AP35326 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SYNE1Q8NF91 8797 aaKnown RBP1.29□□□□□ -2.2
SCN3A-209ENST00000639244 MT1XP80297 61 aa1.29□□□□□ -2.2
SCN3A-209ENST00000639244 RYR3Q15413 4870 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP9-7A8MTY7 169 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 HERC1Q15751 4861 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP19-1Q8IUB9 90 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 LCE3DQ9BYE3 92 aa1.28□□□□□ -2.21
SCN3A-209ENST00000639244 LCE4AQ5TA78 99 aa1.26□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-2Q9BYQ4 174 aa1.25□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-3Q9BYQ3 159 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms