RNA–Protein interactions for RNA: ENST00000639244.1

SCN3A-209, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5 BASIC

Gene SCN3A, Length 8,854 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-209ENST00000639244 KRTAP19-4Q3LI73 84 aa1.89□□□□□ -2.11
SCN3A-209ENST00000639244 KRTAP10-10P60014 251 aa1.89□□□□□ -2.11
SCN3A-209ENST00000639244 HECTD4Q9Y4D8 3996 aa1.88□□□□□ -2.11
SCN3A-209ENST00000639244 LCE2BO14633 110 aa1.85□□□□□ -2.11
SCN3A-209ENST00000639244 LORP23490 312 aaPredicted RBP1.84□□□□□ -2.11
SCN3A-209ENST00000639244 ANK3Q12955 4377 aaKnown RBP1.81□□□□□ -2.12
SCN3A-209ENST00000639244 MT3P25713 68 aa1.79□□□□□ -2.12
SCN3A-209ENST00000639244 FRAS1Q86XX4 4008 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 CMYA5Q8N3K9 4069 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 CRCT1Q9UGL9 99 aa1.78□□□□□ -2.12
SCN3A-209ENST00000639244 VPS13BQ7Z7G8 4022 aa1.76□□□□□ -2.13
SCN3A-209ENST00000639244 DNAH7Q8WXX0 4024 aa1.75□□□□□ -2.13
SCN3A-209ENST00000639244 HUWE1Q7Z6Z7 4374 aaKnown RBP1.74□□□□□ -2.13
SCN3A-209ENST00000639244 KMT2AQ03164 3969 aa1.71□□□□□ -2.14
SCN3A-209ENST00000639244 DNAH10Q8IVF4 4471 aa1.71□□□□□ -2.14
SCN3A-209ENST00000639244 KRTAP2-2Q9BYT5 123 aa1.69□□□□□ -2.14
SCN3A-209ENST00000639244 KRTAP21-3Q3LHN1 58 aa1.68□□□□□ -2.14
SCN3A-209ENST00000639244 DNAH2Q9P225 4427 aa1.65□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP4-5Q9BYR2 181 aa1.65□□□□□ -2.15
SCN3A-209ENST00000639244 FLGP20930 4061 aaPredicted RBP1.64□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP10-12P60413 245 aa1.63□□□□□ -2.15
SCN3A-209ENST00000639244 DNAH1Q9P2D7 4330 aa1.63□□□□□ -2.15
SCN3A-209ENST00000639244 LCE3AQ5TA76 89 aa1.62□□□□□ -2.15
SCN3A-209ENST00000639244 LCE5AQ5TCM9 118 aa1.62□□□□□ -2.15
SCN3A-209ENST00000639244 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
SCN3A-209ENST00000639244 KRTAP12-4P60329 112 aa1.6□□□□□ -2.15
SCN3A-209ENST00000639244 MT1HL1P0DM35 61 aa1.59□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP10-5P60370 271 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP12-3P60328 96 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH9Q9NYC9 4486 aa1.58□□□□□ -2.16
SCN3A-209ENST00000639244 PRKDCP78527 4128 aaKnown RBP1.57□□□□□ -2.16
SCN3A-209ENST00000639244 VPS13DQ5THJ4 4388 aa1.57□□□□□ -2.16
SCN3A-209ENST00000639244 PLECQ15149 4684 aaKnown RBP1.56□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH8Q96JB1 4490 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 STARD9Q9P2P6 4700 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP8-1Q8IUC2 63 aa1.56□□□□□ -2.16
SCN3A-209ENST00000639244 DNAH11Q96DT5 4516 aa1.55□□□□□ -2.16
SCN3A-209ENST00000639244 KRTAP10-4P60372 401 aaPredicted RBP1.52□□□□□ -2.17
SCN3A-209ENST00000639244 DNAH17Q9UFH2 4485 aa1.52□□□□□ -2.17
SCN3A-209ENST00000639244 RYR1P21817 5038 aa1.52□□□□□ -2.17
SCN3A-209ENST00000639244 DNAH5Q8TE73 4624 aa1.51□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1AQ5T7P2 110 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 TNXBP22105 4242 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 HSPG2P98160 4391 aa1.5□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP4-1Q9BYQ7 146 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP2-1Q9BYU5 128 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP6-3Q3LI67 103 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 FAT2Q9NYQ8 4349 aa1.49□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1EQ5T753 118 aa1.48□□□□□ -2.17
SCN3A-209ENST00000639244 PKHD1P08F94 4074 aa1.48□□□□□ -2.17
SCN3A-209ENST00000639244 LCE1FQ5T754 118 aa1.47□□□□□ -2.17
SCN3A-209ENST00000639244 KRTAP9-6A0A140TA67 174 aa1.47□□□□□ -2.17
SCN3A-209ENST00000639244 MYCBP2O75592 4640 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 DYNC2H1Q8NCM8 4307 aaKnown RBP1.46□□□□□ -2.18
SCN3A-209ENST00000639244 FAT3Q8TDW7 4589 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 LCE3CQ5T5A8 94 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 LRP1BQ9NZR2 4599 aa1.46□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP5-2Q701N4 177 aa1.45□□□□□ -2.18
SCN3A-209ENST00000639244 FAT1Q14517 4588 aa1.45□□□□□ -2.18
SCN3A-209ENST00000639244 APOBP04114 4563 aaKnown RBP1.44□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP19-5Q3LI72 72 aa1.44□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP9-4Q9BYQ2 154 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 LCE1DQ5T752 114 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 LPAP08519 4548 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 MT1HP80294 61 aa1.43□□□□□ -2.18
SCN3A-209ENST00000639244 KRTAP10-7P60409 375 aaPredicted RBP1.42□□□□□ -2.18
SCN3A-209ENST00000639244 SPRR2FQ96RM1 72 aa1.41□□□□□ -2.18
SCN3A-209ENST00000639244 DNHD1Q96M86 4753 aa1.41□□□□□ -2.18
SCN3A-209ENST00000639244 LRP1Q07954 4544 aaKnown RBP1.4□□□□□ -2.18
SCN3A-209ENST00000639244 MT1FP04733 61 aa1.4□□□□□ -2.19
SCN3A-209ENST00000639244 LCE3BQ5TA77 95 aa1.39□□□□□ -2.19
SCN3A-209ENST00000639244 MT2AP02795 61 aa1.39□□□□□ -2.19
SCN3A-209ENST00000639244 SACSQ9NZJ4 4579 aa1.38□□□□□ -2.19
SCN3A-209ENST00000639244 PKD1P98161 4303 aa1.38□□□□□ -2.19
SCN3A-209ENST00000639244 PKHD1L1Q86WI1 4243 aa1.37□□□□□ -2.19
SCN3A-209ENST00000639244 DYNC1H1Q14204 4646 aaKnown RBP1.37□□□□□ -2.19
SCN3A-209ENST00000639244 MT1GP13640 62 aa1.35□□□□□ -2.19
SCN3A-209ENST00000639244 SPRR2GQ9BYE4 73 aa1.35□□□□□ -2.19
SCN3A-209ENST00000639244 PRM1P04553 51 aa1.34□□□□□ -2.19
SCN3A-209ENST00000639244 KRTAP4-8A0A0G2JLE6 195 aa1.33□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP4-8Q9BYQ9 185 aa1.33□□□□□ -2.2
SCN3A-209ENST00000639244 HYDINQ4G0P3 5121 aa1.32□□□□□ -2.2
SCN3A-209ENST00000639244 LRP2P98164 4655 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 LCE3EQ5T5B0 92 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP4-7Q9BYR0 210 aa1.31□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2EP22531 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2BP35325 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SPRR2AP35326 72 aa1.3□□□□□ -2.2
SCN3A-209ENST00000639244 SYNE1Q8NF91 8797 aaKnown RBP1.29□□□□□ -2.2
SCN3A-209ENST00000639244 MT1XP80297 61 aa1.29□□□□□ -2.2
SCN3A-209ENST00000639244 RYR3Q15413 4870 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP9-7A8MTY7 169 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 HERC1Q15751 4861 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 KRTAP19-1Q8IUB9 90 aa1.28□□□□□ -2.2
SCN3A-209ENST00000639244 LCE3DQ9BYE3 92 aa1.28□□□□□ -2.21
SCN3A-209ENST00000639244 LCE4AQ5TA78 99 aa1.26□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-2Q9BYQ4 174 aa1.25□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-3Q9BYQ3 159 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms