RNA–Protein interactions for RNA: ENST00000630866.1

SPTAN1-223, Transcript of spectrin alpha, non-erythrocytic 1, human

TSL 5 BASIC

Gene SPTAN1, Length 7,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPTAN1-223	ENST00000630866	KRTAP10-5	P60370	271 aa		3.77	□□□□□ -1.81
SPTAN1-223	ENST00000630866	KRTAP10-7	P60409	375 aa	Predicted RBP	3.76	□□□□□ -1.81
SPTAN1-223	ENST00000630866	KRTAP3-3	Q9BYR6	98 aa		3.74	□□□□□ -1.81
SPTAN1-223	ENST00000630866	DNAH9	Q9NYC9	4486 aa		3.71	□□□□□ -1.82
SPTAN1-223	ENST00000630866	CSMD3	Q7Z407	3707 aa		3.71	□□□□□ -1.82
SPTAN1-223	ENST00000630866	KRTAP3-2	Q9BYR7	98 aa		3.7	□□□□□ -1.82
SPTAN1-223	ENST00000630866	KRTAP12-3	P60328	96 aa		3.7	□□□□□ -1.82
SPTAN1-223	ENST00000630866	LCE3A	Q5TA76	89 aa		3.62	□□□□□ -1.83
SPTAN1-223	ENST00000630866	MT1H	P80294	61 aa		3.61	□□□□□ -1.83
SPTAN1-223	ENST00000630866	PRKDC	P78527	4128 aa	Known RBP	3.61	□□□□□ -1.83
SPTAN1-223	ENST00000630866	SPRR2F	Q96RM1	72 aa		3.59	□□□□□ -1.83
SPTAN1-223	ENST00000630866	SPRR5	A0A1B0GTR4	108 aa		3.59	□□□□□ -1.83
SPTAN1-223	ENST00000630866	ANK2	Q01484	3957 aa		3.57	□□□□□ -1.84
SPTAN1-223	ENST00000630866	DNAH5	Q8TE73	4624 aa		3.57	□□□□□ -1.84
SPTAN1-223	ENST00000630866	KRTAP23-1	A1A580	65 aa		3.56	□□□□□ -1.84
SPTAN1-223	ENST00000630866	KRTAP4-1	Q9BYQ7	146 aa		3.55	□□□□□ -1.84
SPTAN1-223	ENST00000630866	CMYA5	Q8N3K9	4069 aa		3.52	□□□□□ -1.85
SPTAN1-223	ENST00000630866	SPRR2E	P22531	72 aa		3.5	□□□□□ -1.85
SPTAN1-223	ENST00000630866	SPRR2B	P35325	72 aa		3.5	□□□□□ -1.85
SPTAN1-223	ENST00000630866	SPRR2A	P35326	72 aa		3.5	□□□□□ -1.85
SPTAN1-223	ENST00000630866	PLEC	Q15149	4684 aa	Known RBP	3.5	□□□□□ -1.85
SPTAN1-223	ENST00000630866	MT2A	P02795	61 aa		3.5	□□□□□ -1.85
SPTAN1-223	ENST00000630866	DNAH11	Q96DT5	4516 aa		3.49	□□□□□ -1.85
SPTAN1-223	ENST00000630866	KMT2A	Q03164	3969 aa		3.48	□□□□□ -1.85
SPTAN1-223	ENST00000630866	DNAH10	Q8IVF4	4471 aa		3.48	□□□□□ -1.85
SPTAN1-223	ENST00000630866	FAT2	Q9NYQ8	4349 aa		3.48	□□□□□ -1.85
SPTAN1-223	ENST00000630866	DNAH7	Q8WXX0	4024 aa		3.45	□□□□□ -1.86
SPTAN1-223	ENST00000630866	DNHD1	Q96M86	4753 aa		3.45	□□□□□ -1.86
SPTAN1-223	ENST00000630866	DNAH2	Q9P225	4427 aa		3.45	□□□□□ -1.86
SPTAN1-223	ENST00000630866	VPS13D	Q5THJ4	4388 aa		3.44	□□□□□ -1.86
SPTAN1-223	ENST00000630866	DNAH3	Q8TD57	4116 aa		3.43	□□□□□ -1.86
SPTAN1-223	ENST00000630866	SPRR2G	Q9BYE4	73 aa		3.43	□□□□□ -1.86
SPTAN1-223	ENST00000630866	MT1F	P04733	61 aa		3.41	□□□□□ -1.86
SPTAN1-223	ENST00000630866	LRP1B	Q9NZR2	4599 aa		3.41	□□□□□ -1.86
SPTAN1-223	ENST00000630866	LYST	Q99698	3801 aa		3.4	□□□□□ -1.86
SPTAN1-223	ENST00000630866	DYNC2H1	Q8NCM8	4307 aa	Known RBP	3.39	□□□□□ -1.87
SPTAN1-223	ENST00000630866	SPRR2D	P22532	72 aa		3.39	□□□□□ -1.87
SPTAN1-223	ENST00000630866	VPS13B	Q7Z7G8	4022 aa		3.39	□□□□□ -1.87
SPTAN1-223	ENST00000630866	DNAH6	Q9C0G6	4158 aa		3.38	□□□□□ -1.87
SPTAN1-223	ENST00000630866	DNAH17	Q9UFH2	4485 aa		3.37	□□□□□ -1.87
SPTAN1-223	ENST00000630866	KRTAP17-1	Q9BYP8	105 aa		3.36	□□□□□ -1.87
SPTAN1-223	ENST00000630866	STARD9	Q9P2P6	4700 aa		3.35	□□□□□ -1.87
SPTAN1-223	ENST00000630866	DYNC1H1	Q14204	4646 aa	Known RBP	3.33	□□□□□ -1.88
SPTAN1-223	ENST00000630866	FAT1	Q14517	4588 aa		3.33	□□□□□ -1.88
SPTAN1-223	ENST00000630866	KRTAP19-5	Q3LI72	72 aa		3.3	□□□□□ -1.88
SPTAN1-223	ENST00000630866	RYR1	P21817	5038 aa		3.29	□□□□□ -1.88
SPTAN1-223	ENST00000630866	SACS	Q9NZJ4	4579 aa		3.29	□□□□□ -1.88
SPTAN1-223	ENST00000630866	LCE2B	O14633	110 aa		3.27	□□□□□ -1.89
SPTAN1-223	ENST00000630866	DNAH8	Q96JB1	4490 aa		3.26	□□□□□ -1.89
SPTAN1-223	ENST00000630866	FRAS1	Q86XX4	4008 aa		3.22	□□□□□ -1.89
SPTAN1-223	ENST00000630866	KRTAP12-4	P60329	112 aa		3.2	□□□□□ -1.9
SPTAN1-223	ENST00000630866	KRTAP9-2	Q9BYQ4	174 aa		3.2	□□□□□ -1.9
SPTAN1-223	ENST00000630866	LCE3C	Q5T5A8	94 aa		3.2	□□□□□ -1.9
SPTAN1-223	ENST00000630866	PKHD1L1	Q86WI1	4243 aa		3.19	□□□□□ -1.9
SPTAN1-223	ENST00000630866	LCE2C	Q5TA81	110 aa		3.19	□□□□□ -1.9
SPTAN1-223	ENST00000630866	KRTAP19-4	Q3LI73	84 aa		3.18	□□□□□ -1.9
SPTAN1-223	ENST00000630866	PKHD1	P08F94	4074 aa		3.18	□□□□□ -1.9
SPTAN1-223	ENST00000630866	FAT3	Q8TDW7	4589 aa		3.17	□□□□□ -1.9
SPTAN1-223	ENST00000630866	HECTD4	Q9Y4D8	3996 aa		3.17	□□□□□ -1.9
SPTAN1-223	ENST00000630866	KRTAP19-8	Q3LI54	63 aa		3.17	□□□□□ -1.9
SPTAN1-223	ENST00000630866	APOB	P04114	4563 aa	Known RBP	3.16	□□□□□ -1.9
SPTAN1-223	ENST00000630866	KRTAP19-1	Q8IUB9	90 aa		3.16	□□□□□ -1.9
SPTAN1-223	ENST00000630866	LCE3B	Q5TA77	95 aa		3.16	□□□□□ -1.9
SPTAN1-223	ENST00000630866	LCE2D	Q5TA82	110 aa	Predicted RBP	3.15	□□□□□ -1.9
SPTAN1-223	ENST00000630866	KRTAP9-6	A0A140TA67	174 aa		3.15	□□□□□ -1.91
SPTAN1-223	ENST00000630866	RYR3	Q15413	4870 aa		3.13	□□□□□ -1.91
SPTAN1-223	ENST00000630866	MT4	P47944	62 aa		3.13	□□□□□ -1.91
SPTAN1-223	ENST00000630866	KRTAP9-8	Q9BYQ0	159 aa		3.1	□□□□□ -1.91
SPTAN1-223	ENST00000630866	HERC1	Q15751	4861 aa		3.09	□□□□□ -1.92
SPTAN1-223	ENST00000630866	LRP1	Q07954	4544 aa	Known RBP	3.09	□□□□□ -1.92
SPTAN1-223	ENST00000630866	MT1X	P80297	61 aa		3.07	□□□□□ -1.92
SPTAN1-223	ENST00000630866	HSPG2	P98160	4391 aa		3.06	□□□□□ -1.92
SPTAN1-223	ENST00000630866	MYCBP2	O75592	4640 aa		3.06	□□□□□ -1.92
SPTAN1-223	ENST00000630866	MT1B	P07438	61 aa		3.05	□□□□□ -1.92
SPTAN1-223	ENST00000630866	KRTAP9-3	Q9BYQ3	159 aa		3.04	□□□□□ -1.92
SPTAN1-223	ENST00000630866	MT1G	P13640	62 aa		3.02	□□□□□ -1.93
SPTAN1-223	ENST00000630866	PKD1	P98161	4303 aa		3.01	□□□□□ -1.93
SPTAN1-223	ENST00000630866	KRTAP4-8	A0A0G2JLE6	195 aa		3	□□□□□ -1.93
SPTAN1-223	ENST00000630866	KRTAP4-8	Q9BYQ9	185 aa		3	□□□□□ -1.93
SPTAN1-223	ENST00000630866	KIAA1109	Q2LD37	5005 aa		2.98	□□□□□ -1.93
SPTAN1-223	ENST00000630866	LCE1B	Q5T7P3	118 aa		2.98	□□□□□ -1.93
SPTAN1-223	ENST00000630866	KRTAP20-1	Q3LI63	56 aa		2.97	□□□□□ -1.93
SPTAN1-223	ENST00000630866	RYR2	Q92736	4967 aa		2.96	□□□□□ -1.94
SPTAN1-223	ENST00000630866	HERC2	O95714	4834 aa		2.95	□□□□□ -1.94
SPTAN1-223	ENST00000630866	KRTAP9-7	A8MTY7	169 aa		2.93	□□□□□ -1.94
SPTAN1-223	ENST00000630866	LCE3E	Q5T5B0	92 aa		2.93	□□□□□ -1.94
SPTAN1-223	ENST00000630866	LCE3D	Q9BYE3	92 aa		2.91	□□□□□ -1.94
SPTAN1-223	ENST00000630866	BIRC6	Q9NR09	4857 aa		2.91	□□□□□ -1.94
SPTAN1-223	ENST00000630866	KRTAP19-3	Q7Z4W3	81 aa		2.9	□□□□□ -1.94
SPTAN1-223	ENST00000630866	LPA	P08519	4548 aa		2.9	□□□□□ -1.95
SPTAN1-223	ENST00000630866	LCE1D	Q5T752	114 aa		2.9	□□□□□ -1.95
SPTAN1-223	ENST00000630866	LRP2	P98164	4655 aa		2.88	□□□□□ -1.95
SPTAN1-223	ENST00000630866	LCE5A	Q5TCM9	118 aa		2.88	□□□□□ -1.95
SPTAN1-223	ENST00000630866	PCLO	Q9Y6V0	5065 aa		2.85	□□□□□ -1.95
SPTAN1-223	ENST00000630866	LCE1C	Q5T751	118 aa		2.84	□□□□□ -1.96
SPTAN1-223	ENST00000630866	LCE1E	Q5T753	118 aa		2.84	□□□□□ -1.96
SPTAN1-223	ENST00000630866	LCE1F	Q5T754	118 aa		2.84	□□□□□ -1.96
SPTAN1-223	ENST00000630866	LCE1A	Q5T7P2	110 aa		2.84	□□□□□ -1.96
SPTAN1-223	ENST00000630866	KMT2C	Q8NEZ4	4911 aa	Known RBP	2.83	□□□□□ -1.96
SPTAN1-223	ENST00000630866	KRTAP19-6	Q3LI70	58 aa		2.83	□□□□□ -1.96

Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms