RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CLTCQ00610 1675 aaKnown RBP-1.8□□□□□ -2.7
SCN1A-208ENST00000625916 ERICH3Q5RHP9 1530 aa-1.8□□□□□ -2.7
SCN1A-208ENST00000625916 LTN1O94822 1766 aa-1.8□□□□□ -2.7
SCN1A-208ENST00000625916 LRRIQ1Q96JM4 1722 aa-1.8□□□□□ -2.7
SCN1A-208ENST00000625916 MAP3K4Q9Y6R4 1608 aa-1.8□□□□□ -2.7
SCN1A-208ENST00000625916 CYB5AP00167 134 aa-1.81□□□□□ -2.7
SCN1A-208ENST00000625916 ITSN2Q9NZM3 1697 aa-1.81□□□□□ -2.7
SCN1A-208ENST00000625916 UACAQ9BZF9 1416 aa-1.82□□□□□ -2.7
SCN1A-208ENST00000625916 WT1-ASQ06250 92 aa-1.82□□□□□ -2.7
SCN1A-208ENST00000625916 RABAC1Q9UI14 185 aa-1.82□□□□□ -2.7
SCN1A-208ENST00000625916 ABCC6O95255 1503 aa-1.82□□□□□ -2.7
SCN1A-208ENST00000625916 ANKRD26Q9UPS8 1709 aa-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 KIF14Q15058 1648 aa-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 H3BUA1 57 aa-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 HMGN2P05204 90 aaKnown RBP-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 WFDC10BQ8IUB3 73 aa-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 KDM5DQ9BY66 1539 aa-1.83□□□□□ -2.7
SCN1A-208ENST00000625916 EFCAB6Q5THR3 1501 aa-1.84□□□□□ -2.7
SCN1A-208ENST00000625916 NDUFA4O00483 81 aa-1.84□□□□□ -2.7
SCN1A-208ENST00000625916 APELAP0DMC3 54 aa-1.84□□□□□ -2.7
SCN1A-208ENST00000625916 POLR2KP53803 58 aaKnown RBP-1.84□□□□□ -2.7
SCN1A-208ENST00000625916 FAM208AQ9UK61 1670 aaKnown RBP-1.84□□□□□ -2.7
SCN1A-208ENST00000625916 NHSQ6T4R5 1651 aa-1.85□□□□□ -2.71
SCN1A-208ENST00000625916 CFAP43Q8NDM7 1665 aa-1.85□□□□□ -2.71
SCN1A-208ENST00000625916 RALGAPBQ86X10 1494 aa-1.85□□□□□ -2.71
SCN1A-208ENST00000625916 S100A10P60903 97 aa-1.85□□□□□ -2.71
SCN1A-208ENST00000625916 C2orf88Q9BSF0 95 aa-1.85□□□□□ -2.71
SCN1A-208ENST00000625916 MYO3AQ8NEV4 1616 aa-1.86□□□□□ -2.71
SCN1A-208ENST00000625916 EFCAB10A6NFE3 127 aa-1.86□□□□□ -2.71
SCN1A-208ENST00000625916 BVES-AS1Q5T3Y7 98 aa-1.86□□□□□ -2.71
SCN1A-208ENST00000625916 DIP2BQ9P265 1576 aa-1.86□□□□□ -2.71
SCN1A-208ENST00000625916 EPRSP07814 1512 aaKnown RBP-1.86□□□□□ -2.71
SCN1A-208ENST00000625916 A0A096LPF7 62 aa-1.87□□□□□ -2.71
SCN1A-208ENST00000625916 LINC00032P0C843 101 aa-1.87□□□□□ -2.71
SCN1A-208ENST00000625916 SMIM11AP58511 58 aa-1.87□□□□□ -2.71
SCN1A-208ENST00000625916 DDX60Q8IY21 1712 aaKnown RBP-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 INO80Q9ULG1 1556 aaPredicted RBP-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 ANKARQ7Z5J8 1434 aa-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 LINC00587B1AMM8 73 aa-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 PEA15Q15121 130 aa-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 FANCAO15360 1455 aa-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 DDX60LQ5H9U9 1706 aaKnown RBP-1.88□□□□□ -2.71
SCN1A-208ENST00000625916 NDUFB1O75438 58 aa-1.89□□□□□ -2.71
SCN1A-208ENST00000625916 SARNPP82979 210 aaKnown RBP-1.9□□□□□ -2.71
SCN1A-208ENST00000625916 DPY30Q9C005 99 aa-1.9□□□□□ -2.71
SCN1A-208ENST00000625916 ABCA9Q8IUA7 1624 aa-1.91□□□□□ -2.71
SCN1A-208ENST00000625916 MYMXA0A1B0GTQ4 84 aa-1.91□□□□□ -2.72
SCN1A-208ENST00000625916 IFI27P40305 119 aaPredicted RBP-1.91□□□□□ -2.72
SCN1A-208ENST00000625916 UGGT1Q9NYU2 1555 aa-1.91□□□□□ -2.72
SCN1A-208ENST00000625916 ABCA8O94911 1581 aa-1.92□□□□□ -2.72
SCN1A-208ENST00000625916 ABCC1P33527 1531 aa-1.92□□□□□ -2.72
SCN1A-208ENST00000625916 DCAF1Q9Y4B6 1507 aa-1.92□□□□□ -2.72
SCN1A-208ENST00000625916 LINC01590Q5TEZ4 76 aa-1.93□□□□□ -2.72
SCN1A-208ENST00000625916 ENHOQ6UWT2 76 aa-1.93□□□□□ -2.72
SCN1A-208ENST00000625916 AGLP35573 1532 aa-1.93□□□□□ -2.72
SCN1A-208ENST00000625916 URB2Q14146 1524 aaKnown RBP-1.93□□□□□ -2.72
SCN1A-208ENST00000625916 ARFGEF2Q9Y6D5 1785 aa-1.93□□□□□ -2.72
SCN1A-208ENST00000625916 CCDC18Q5T9S5 1454 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 ABCA5Q8WWZ7 1642 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 DEFB108AA8MXU0 73 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 UMAD1C9J7I0 102 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 S100A8P05109 93 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 DEFB108BQ8NET1 73 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 C20orf78Q9BR46 151 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 CCDC88BA6NC98 1476 aa-1.94□□□□□ -2.72
SCN1A-208ENST00000625916 CCNB3Q8WWL7 1395 aa-1.95□□□□□ -2.72
SCN1A-208ENST00000625916 NCMAPQ5T1S8 102 aa-1.95□□□□□ -2.72
SCN1A-208ENST00000625916 COX14Q96I36 57 aa-1.95□□□□□ -2.72
SCN1A-208ENST00000625916 CEBPZOSA8MTT3 80 aa-1.96□□□□□ -2.72
SCN1A-208ENST00000625916 DEFB114Q30KQ6 69 aa-1.96□□□□□ -2.72
SCN1A-208ENST00000625916 H3BUX3 64 aa-1.97□□□□□ -2.72
SCN1A-208ENST00000625916 SMIM2Q9BVW6 85 aa-1.97□□□□□ -2.72
SCN1A-208ENST00000625916 KAAG1Q9UBP8 84 aa-1.97□□□□□ -2.72
SCN1A-208ENST00000625916 ATP7AQ04656 1500 aa-1.97□□□□□ -2.73
SCN1A-208ENST00000625916 GYPAP02724 150 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 FCER1GP30273 86 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 NCBP2-AS2Q69YL0 99 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 C14orf144Q96I85 54 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 ABRACLQ9P1F3 81 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 Q9Y3F1 56 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 ABCA10Q8WWZ4 1543 aa-1.98□□□□□ -2.73
SCN1A-208ENST00000625916 HFM1A2PYH4 1435 aa-1.99□□□□□ -2.73
SCN1A-208ENST00000625916 TOP2AP11388 1531 aaKnown RBP-1.99□□□□□ -2.73
SCN1A-208ENST00000625916 ETDCA0A1B0GVM5 59 aa-1.99□□□□□ -2.73
SCN1A-208ENST00000625916 RBP2P50120 134 aa-1.99□□□□□ -2.73
SCN1A-208ENST00000625916 ACBD7Q8N6N7 88 aa-1.99□□□□□ -2.73
SCN1A-208ENST00000625916 RB1CC1Q8TDY2 1594 aa-2□□□□□ -2.73
SCN1A-208ENST00000625916 CRIP1P50238 77 aa-2□□□□□ -2.73
SCN1A-208ENST00000625916 MINOS1Q5TGZ0 78 aa-2□□□□□ -2.73
SCN1A-208ENST00000625916 MROH2AA6NES4 1674 aa-2□□□□□ -2.73
SCN1A-208ENST00000625916 C3P01024 1663 aa-2□□□□□ -2.73
SCN1A-208ENST00000625916 A0A087WWC5 75 aa-2.01□□□□□ -2.73
SCN1A-208ENST00000625916 MRPL33O75394 65 aaKnown RBP-2.01□□□□□ -2.73
SCN1A-208ENST00000625916 C6orf48Q9UBA6 75 aa-2.01□□□□□ -2.73
SCN1A-208ENST00000625916 CNTLNQ9NXG0 1405 aa-2.01□□□□□ -2.73
SCN1A-208ENST00000625916 CFAP74Q9C0B2 1584 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 ATP6V1G2-DDX39BF2Z307 99 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 DEFB131AP59861 70 aa-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 SNRPFP62306 86 aaKnown RBP-2.02□□□□□ -2.73
SCN1A-208ENST00000625916 NREPQ16612 68 aa-2.02□□□□□ -2.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms