RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 CSMD3Q7Z407 3707 aa4.33□□□□□ -1.72
COL4A6-210ENST00000621266 KRTAP12-3P60328 96 aa4.33□□□□□ -1.72
COL4A6-210ENST00000621266 LCE3AQ5TA76 89 aa4.32□□□□□ -1.72
COL4A6-210ENST00000621266 CMYA5Q8N3K9 4069 aa4.31□□□□□ -1.72
COL4A6-210ENST00000621266 KRTAP10-5P60370 271 aa4.29□□□□□ -1.72
COL4A6-210ENST00000621266 LORP23490 312 aaPredicted RBP4.28□□□□□ -1.72
COL4A6-210ENST00000621266 DNAH1Q9P2D7 4330 aa4.27□□□□□ -1.73
COL4A6-210ENST00000621266 DNAH3Q8TD57 4116 aa4.23□□□□□ -1.73
COL4A6-210ENST00000621266 KRTAP23-1A1A580 65 aa4.19□□□□□ -1.74
COL4A6-210ENST00000621266 FAT2Q9NYQ8 4349 aa4.12□□□□□ -1.75
COL4A6-210ENST00000621266 ANK2Q01484 3957 aa4.12□□□□□ -1.75
COL4A6-210ENST00000621266 KMT2AQ03164 3969 aa4.11□□□□□ -1.75
COL4A6-210ENST00000621266 DNAH10Q8IVF4 4471 aa4.11□□□□□ -1.75
COL4A6-210ENST00000621266 DNAH5Q8TE73 4624 aa4.11□□□□□ -1.75
COL4A6-210ENST00000621266 KRTAP8-1Q8IUC2 63 aa4.1□□□□□ -1.75
COL4A6-210ENST00000621266 PLECQ15149 4684 aaKnown RBP4.09□□□□□ -1.75
COL4A6-210ENST00000621266 DNAH7Q8WXX0 4024 aa4.06□□□□□ -1.76
COL4A6-210ENST00000621266 PRKDCP78527 4128 aaKnown RBP4.05□□□□□ -1.76
COL4A6-210ENST00000621266 MT1HP80294 61 aa4.04□□□□□ -1.76
COL4A6-210ENST00000621266 DNAH2Q9P225 4427 aa4.04□□□□□ -1.76
COL4A6-210ENST00000621266 FRAS1Q86XX4 4008 aa4.04□□□□□ -1.76
COL4A6-210ENST00000621266 DNAH17Q9UFH2 4485 aa4.04□□□□□ -1.76
COL4A6-210ENST00000621266 VPS13DQ5THJ4 4388 aa4.03□□□□□ -1.76
COL4A6-210ENST00000621266 DNAH6Q9C0G6 4158 aa4.03□□□□□ -1.76
COL4A6-210ENST00000621266 KRTAP4-1Q9BYQ7 146 aa4.02□□□□□ -1.77
COL4A6-210ENST00000621266 STARD9Q9P2P6 4700 aa4.02□□□□□ -1.77
COL4A6-210ENST00000621266 DNAH11Q96DT5 4516 aa4.01□□□□□ -1.77
COL4A6-210ENST00000621266 DNHD1Q96M86 4753 aa4.01□□□□□ -1.77
COL4A6-210ENST00000621266 DYNC2H1Q8NCM8 4307 aaKnown RBP3.99□□□□□ -1.77
COL4A6-210ENST00000621266 LYSTQ99698 3801 aa3.95□□□□□ -1.78
COL4A6-210ENST00000621266 LRP1BQ9NZR2 4599 aa3.95□□□□□ -1.78
COL4A6-210ENST00000621266 VPS13BQ7Z7G8 4022 aa3.93□□□□□ -1.78
COL4A6-210ENST00000621266 DYNC1H1Q14204 4646 aaKnown RBP3.91□□□□□ -1.78
COL4A6-210ENST00000621266 SPRR2FQ96RM1 72 aa3.9□□□□□ -1.79
COL4A6-210ENST00000621266 KRTAP17-1Q9BYP8 105 aa3.89□□□□□ -1.79
COL4A6-210ENST00000621266 MT2AP02795 61 aa3.85□□□□□ -1.79
COL4A6-210ENST00000621266 RYR1P21817 5038 aa3.84□□□□□ -1.79
COL4A6-210ENST00000621266 DNAH8Q96JB1 4490 aa3.83□□□□□ -1.8
COL4A6-210ENST00000621266 FAT1Q14517 4588 aa3.82□□□□□ -1.8
COL4A6-210ENST00000621266 SPRR2GQ9BYE4 73 aa3.8□□□□□ -1.8
COL4A6-210ENST00000621266 SACSQ9NZJ4 4579 aa3.8□□□□□ -1.8
COL4A6-210ENST00000621266 MT1FP04733 61 aa3.8□□□□□ -1.8
COL4A6-210ENST00000621266 SPRR2EP22531 72 aa3.79□□□□□ -1.8
COL4A6-210ENST00000621266 SPRR2BP35325 72 aa3.79□□□□□ -1.8
COL4A6-210ENST00000621266 SPRR2AP35326 72 aa3.79□□□□□ -1.8
COL4A6-210ENST00000621266 KRTAP19-5Q3LI72 72 aa3.77□□□□□ -1.81
COL4A6-210ENST00000621266 LCE3CQ5T5A8 94 aa3.77□□□□□ -1.81
COL4A6-210ENST00000621266 HECTD4Q9Y4D8 3996 aa3.76□□□□□ -1.81
COL4A6-210ENST00000621266 HSPG2P98160 4391 aa3.73□□□□□ -1.81
COL4A6-210ENST00000621266 KRTAP10-7P60409 375 aaPredicted RBP3.72□□□□□ -1.81
COL4A6-210ENST00000621266 APOBP04114 4563 aaKnown RBP3.68□□□□□ -1.82
COL4A6-210ENST00000621266 PKHD1L1Q86WI1 4243 aa3.68□□□□□ -1.82
COL4A6-210ENST00000621266 RYR3Q15413 4870 aa3.68□□□□□ -1.82
COL4A6-210ENST00000621266 KIAA1109Q2LD37 5005 aa3.66□□□□□ -1.82
COL4A6-210ENST00000621266 SPRR2DP22532 72 aa3.66□□□□□ -1.82
COL4A6-210ENST00000621266 FAT3Q8TDW7 4589 aa3.65□□□□□ -1.83
COL4A6-210ENST00000621266 LPAP08519 4548 aa3.62□□□□□ -1.83
COL4A6-210ENST00000621266 KRTAP12-4P60329 112 aa3.62□□□□□ -1.83
COL4A6-210ENST00000621266 LCE3BQ5TA77 95 aa3.62□□□□□ -1.83
COL4A6-210ENST00000621266 RYR2Q92736 4967 aa3.59□□□□□ -1.83
COL4A6-210ENST00000621266 KRTAP19-1Q8IUB9 90 aa3.56□□□□□ -1.84
COL4A6-210ENST00000621266 KRTAP19-8Q3LI54 63 aa3.55□□□□□ -1.84
COL4A6-210ENST00000621266 KRTAP19-4Q3LI73 84 aa3.53□□□□□ -1.84
COL4A6-210ENST00000621266 LCE2BO14633 110 aa3.53□□□□□ -1.84
COL4A6-210ENST00000621266 PKHD1P08F94 4074 aa3.53□□□□□ -1.84
COL4A6-210ENST00000621266 MYCBP2O75592 4640 aa3.53□□□□□ -1.84
COL4A6-210ENST00000621266 TNXBP22105 4242 aa3.53□□□□□ -1.84
COL4A6-210ENST00000621266 PKD1P98161 4303 aa3.52□□□□□ -1.85
COL4A6-210ENST00000621266 HYDINQ4G0P3 5121 aa3.5□□□□□ -1.85
COL4A6-210ENST00000621266 KRTAP9-2Q9BYQ4 174 aa3.48□□□□□ -1.85
COL4A6-210ENST00000621266 BIRC6Q9NR09 4857 aa3.48□□□□□ -1.85
COL4A6-210ENST00000621266 HERC2O95714 4834 aa3.47□□□□□ -1.85
COL4A6-210ENST00000621266 MT1GP13640 62 aa3.47□□□□□ -1.85
COL4A6-210ENST00000621266 LRP1Q07954 4544 aaKnown RBP3.47□□□□□ -1.85
COL4A6-210ENST00000621266 HERC1Q15751 4861 aa3.47□□□□□ -1.85
COL4A6-210ENST00000621266 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
COL4A6-210ENST00000621266 MT1XP80297 61 aa3.43□□□□□ -1.86
COL4A6-210ENST00000621266 MT1BP07438 61 aa3.42□□□□□ -1.86
COL4A6-210ENST00000621266 MUC17Q685J3 4493 aa3.41□□□□□ -1.86
COL4A6-210ENST00000621266 KRTAP4-8A0A0G2JLE6 195 aa3.4□□□□□ -1.87
COL4A6-210ENST00000621266 KRTAP4-8Q9BYQ9 185 aa3.4□□□□□ -1.87
COL4A6-210ENST00000621266 SPRR5A0A1B0GTR4 108 aa3.4□□□□□ -1.87
COL4A6-210ENST00000621266 LCE2CQ5TA81 110 aa3.39□□□□□ -1.87
COL4A6-210ENST00000621266 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
COL4A6-210ENST00000621266 PCLOQ9Y6V0 5065 aa3.39□□□□□ -1.87
COL4A6-210ENST00000621266 KRTAP9-3Q9BYQ3 159 aa3.36□□□□□ -1.87
COL4A6-210ENST00000621266 KRTAP9-6A0A140TA67 174 aa3.35□□□□□ -1.87
COL4A6-210ENST00000621266 LCE3EQ5T5B0 92 aa3.34□□□□□ -1.88
COL4A6-210ENST00000621266 LRP2P98164 4655 aa3.32□□□□□ -1.88
COL4A6-210ENST00000621266 MT4P47944 62 aa3.32□□□□□ -1.88
COL4A6-210ENST00000621266 LCE2DQ5TA82 110 aaPredicted RBP3.31□□□□□ -1.88
COL4A6-210ENST00000621266 PRM1P04553 51 aa3.25□□□□□ -1.89
COL4A6-210ENST00000621266 KRTAP19-2Q3LHN2 52 aa3.24□□□□□ -1.89
COL4A6-210ENST00000621266 KRTAP4-7Q9BYR0 210 aa3.2□□□□□ -1.9
COL4A6-210ENST00000621266 EPPK1P58107 5090 aaKnown RBP3.19□□□□□ -1.9
COL4A6-210ENST00000621266 KMT2CQ8NEZ4 4911 aaKnown RBP3.16□□□□□ -1.9
COL4A6-210ENST00000621266 KRTAP19-3Q7Z4W3 81 aa3.15□□□□□ -1.9
COL4A6-210ENST00000621266 ABCA13Q86UQ4 5058 aa3.15□□□□□ -1.9
COL4A6-210ENST00000621266 KRTAP20-1Q3LI63 56 aa3.14□□□□□ -1.91
COL4A6-210ENST00000621266 FLGP20930 4061 aaPredicted RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms