RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 KRTAP13-4Q3LI77 160 aa10.07□□□□□ -0.8
PDLIM3-212ENST00000620787 RPL37P61927 97 aaKnown RBP10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 RYR2Q92736 4967 aa10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 KRTAP3-2Q9BYR7 98 aa10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 KMT2CQ8NEZ4 4911 aaKnown RBP10.03□□□□□ -0.8
PDLIM3-212ENST00000620787 TNXBP22105 4242 aa9.98□□□□□ -0.81
PDLIM3-212ENST00000620787 HSPG2P98160 4391 aa9.98□□□□□ -0.81
PDLIM3-212ENST00000620787 A0A0D9SG42 100 aa9.97□□□□□ -0.81
PDLIM3-212ENST00000620787 DMBT1Q9UGM3 2413 aaPredicted RBP9.97□□□□□ -0.81
PDLIM3-212ENST00000620787 KRTAP10-8P60410 259 aa9.96□□□□□ -0.81
PDLIM3-212ENST00000620787 LRP1Q07954 4544 aaKnown RBP9.96□□□□□ -0.82
PDLIM3-212ENST00000620787 S4R3F8 94 aa9.95□□□□□ -0.82
PDLIM3-212ENST00000620787 XP32Q5T750 250 aa9.89□□□□□ -0.83
PDLIM3-212ENST00000620787 P0C880 135 aa9.87□□□□□ -0.83
PDLIM3-212ENST00000620787 TPRXLQ17RH7 258 aa9.87□□□□□ -0.83
PDLIM3-212ENST00000620787 MYCBP2O75592 4640 aa9.76□□□□□ -0.85
PDLIM3-212ENST00000620787 C10orf95Q9H7T3 257 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 KRTAP12-2P59991 146 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 RYR3Q15413 4870 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 Q5VSD8 79 aa9.7□□□□□ -0.86
PDLIM3-212ENST00000620787 SPINT4Q6UDR6 99 aa9.68□□□□□ -0.86
PDLIM3-212ENST00000620787 KRTAP12-1P59990 96 aa9.66□□□□□ -0.86
PDLIM3-212ENST00000620787 RYR1P21817 5038 aa9.56□□□□□ -0.88
PDLIM3-212ENST00000620787 LPAP08519 4548 aa9.55□□□□□ -0.88
PDLIM3-212ENST00000620787 KRTAP15-1Q3LI76 137 aa9.54□□□□□ -0.88
PDLIM3-212ENST00000620787 KRTAP17-1Q9BYP8 105 aa9.54□□□□□ -0.88
PDLIM3-212ENST00000620787 MT1HL1P0DM35 61 aa9.52□□□□□ -0.88
PDLIM3-212ENST00000620787 M0QZ58 72 aa9.52□□□□□ -0.89
PDLIM3-212ENST00000620787 KIAA1109Q2LD37 5005 aa9.49□□□□□ -0.89
PDLIM3-212ENST00000620787 LRP2P98164 4655 aa9.45□□□□□ -0.9
PDLIM3-212ENST00000620787 EPPK1P58107 5090 aaKnown RBP9.39□□□□□ -0.91
PDLIM3-212ENST00000620787 NDUFAF8A1L188 74 aa9.36□□□□□ -0.91
PDLIM3-212ENST00000620787 R4GN34 69 aa9.22□□□□□ -0.93
PDLIM3-212ENST00000620787 LORP23490 312 aaPredicted RBP9.13□□□□□ -0.95
PDLIM3-212ENST00000620787 ABCA13Q86UQ4 5058 aa9.1□□□□□ -0.95
PDLIM3-212ENST00000620787 MUC17Q685J3 4493 aa9.09□□□□□ -0.95
PDLIM3-212ENST00000620787 KRTAP4-5Q9BYR2 181 aa9.08□□□□□ -0.96
PDLIM3-212ENST00000620787 SEC61BP60468 96 aaKnown RBP8.99□□□□□ -0.97
PDLIM3-212ENST00000620787 PLAC4Q8WY50 150 aa8.97□□□□□ -0.97
PDLIM3-212ENST00000620787 KRTAP4-1Q9BYQ7 146 aa8.97□□□□□ -0.97
PDLIM3-212ENST00000620787 KRTAP19-2Q3LHN2 52 aa8.87□□□□□ -0.99
PDLIM3-212ENST00000620787 HERC2O95714 4834 aa8.83□□□□□ -1
PDLIM3-212ENST00000620787 PP632Q6XCG6 107 aa8.8□□□□□ -1
PDLIM3-212ENST00000620787 CAMK2N1Q7Z7J9 78 aa8.78□□□□□ -1
PDLIM3-212ENST00000620787 J3QL48 77 aa8.68□□□□□ -1.02
PDLIM3-212ENST00000620787 BIRC6Q9NR09 4857 aa8.66□□□□□ -1.02
PDLIM3-212ENST00000620787 FLGP20930 4061 aaPredicted RBP8.59□□□□□ -1.03
PDLIM3-212ENST00000620787 LUZP6Q538Z0 58 aa8.57□□□□□ -1.04
PDLIM3-212ENST00000620787 HERC1Q15751 4861 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 TNP1P09430 55 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 MUC2Q02817 5179 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 KRTAP23-1A1A580 65 aa8.46□□□□□ -1.06
PDLIM3-212ENST00000620787 PCLOQ9Y6V0 5065 aa8.45□□□□□ -1.06
PDLIM3-212ENST00000620787 SPRR5A0A1B0GTR4 108 aa8.36□□□□□ -1.07
PDLIM3-212ENST00000620787 HMCN2Q8NDA2 5059 aa8.33□□□□□ -1.08
PDLIM3-212ENST00000620787 A0A0A0MQY5 61 aa8.31□□□□□ -1.08
PDLIM3-212ENST00000620787 SPRR2GQ9BYE4 73 aa8.22□□□□□ -1.09
PDLIM3-212ENST00000620787 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
PDLIM3-212ENST00000620787 KRTAP19-1Q8IUB9 90 aa8.18□□□□□ -1.1
PDLIM3-212ENST00000620787 FAT4Q6V0I7 4981 aa8.1□□□□□ -1.11
PDLIM3-212ENST00000620787 LCE3AQ5TA76 89 aa8.06□□□□□ -1.12
PDLIM3-212ENST00000620787 LCE2DQ5TA82 110 aaPredicted RBP8.04□□□□□ -1.12
PDLIM3-212ENST00000620787 RNF213Q63HN8 5207 aa8.01□□□□□ -1.13
PDLIM3-212ENST00000620787 UBR4Q5T4S7 5183 aa8.01□□□□□ -1.13
PDLIM3-212ENST00000620787 M0R2T5 61 aa7.95□□□□□ -1.14
PDLIM3-212ENST00000620787 MT1HP80294 61 aa7.93□□□□□ -1.14
PDLIM3-212ENST00000620787 MT1FP04733 61 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 LOC100996750A0A140TA64 210 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 KRTAP4-6Q9BYQ5 205 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 MT2AP02795 61 aa7.89□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP10-10P60014 251 aa7.86□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP8-1Q8IUC2 63 aa7.85□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP19-8Q3LI54 63 aa7.82□□□□□ -1.16
PDLIM3-212ENST00000620787 KRTAP9-8Q9BYQ0 159 aa7.81□□□□□ -1.16
PDLIM3-212ENST00000620787 KRTAP10-5P60370 271 aa7.75□□□□□ -1.17
PDLIM3-212ENST00000620787 MT1XP80297 61 aa7.73□□□□□ -1.17
PDLIM3-212ENST00000620787 MT1BP07438 61 aa7.72□□□□□ -1.17
PDLIM3-212ENST00000620787 KRTAP12-3P60328 96 aa7.64□□□□□ -1.19
PDLIM3-212ENST00000620787 KRTAP10-12P60413 245 aa7.63□□□□□ -1.19
PDLIM3-212ENST00000620787 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
PDLIM3-212ENST00000620787 KRTAP10-7P60409 375 aaPredicted RBP7.54□□□□□ -1.2
PDLIM3-212ENST00000620787 INE1O15225 51 aa7.52□□□□□ -1.21
PDLIM3-212ENST00000620787 KRTAP9-3Q9BYQ3 159 aa7.46□□□□□ -1.21
PDLIM3-212ENST00000620787 KRTAP19-5Q3LI72 72 aa7.25□□□□□ -1.25
PDLIM3-212ENST00000620787 LCE3CQ5T5A8 94 aa7.22□□□□□ -1.25
PDLIM3-212ENST00000620787 LCE2BO14633 110 aa7.13□□□□□ -1.27
PDLIM3-212ENST00000620787 USH2AO75445 5202 aa7.05□□□□□ -1.28
PDLIM3-212ENST00000620787 LCE2AQ5TA79 106 aaPredicted RBP7.04□□□□□ -1.28
PDLIM3-212ENST00000620787 KRTAP9-6A8MVA2 160 aa7.02□□□□□ -1.29
PDLIM3-212ENST00000620787 KMT2DO14686 5537 aa7.01□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP4-8A0A0G2JLE6 195 aa7□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP4-8Q9BYQ9 185 aa7□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP19-7Q3SYF9 63 aa6.88□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-3P0C7H8 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-4Q9BYR9 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-1Q9BYU5 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
PDLIM3-212ENST00000620787 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.34
PDLIM3-212ENST00000620787 MT1LQ93083 61 aa6.7□□□□□ -1.34
PDLIM3-212ENST00000620787 MT1EP04732 61 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms