RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 KRTAP13-4Q3LI77 160 aa10.07□□□□□ -0.8
PDLIM3-212ENST00000620787 RPL37P61927 97 aaKnown RBP10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 RYR2Q92736 4967 aa10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 KRTAP3-2Q9BYR7 98 aa10.04□□□□□ -0.8
PDLIM3-212ENST00000620787 KMT2CQ8NEZ4 4911 aaKnown RBP10.03□□□□□ -0.8
PDLIM3-212ENST00000620787 TNXBP22105 4242 aa9.98□□□□□ -0.81
PDLIM3-212ENST00000620787 HSPG2P98160 4391 aa9.98□□□□□ -0.81
PDLIM3-212ENST00000620787 A0A0D9SG42 100 aa9.97□□□□□ -0.81
PDLIM3-212ENST00000620787 DMBT1Q9UGM3 2413 aaPredicted RBP9.97□□□□□ -0.81
PDLIM3-212ENST00000620787 KRTAP10-8P60410 259 aa9.96□□□□□ -0.81
PDLIM3-212ENST00000620787 LRP1Q07954 4544 aaKnown RBP9.96□□□□□ -0.82
PDLIM3-212ENST00000620787 S4R3F8 94 aa9.95□□□□□ -0.82
PDLIM3-212ENST00000620787 XP32Q5T750 250 aa9.89□□□□□ -0.83
PDLIM3-212ENST00000620787 P0C880 135 aa9.87□□□□□ -0.83
PDLIM3-212ENST00000620787 TPRXLQ17RH7 258 aa9.87□□□□□ -0.83
PDLIM3-212ENST00000620787 MYCBP2O75592 4640 aa9.76□□□□□ -0.85
PDLIM3-212ENST00000620787 C10orf95Q9H7T3 257 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 KRTAP12-2P59991 146 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 RYR3Q15413 4870 aa9.75□□□□□ -0.85
PDLIM3-212ENST00000620787 Q5VSD8 79 aa9.7□□□□□ -0.86
PDLIM3-212ENST00000620787 SPINT4Q6UDR6 99 aa9.68□□□□□ -0.86
PDLIM3-212ENST00000620787 KRTAP12-1P59990 96 aa9.66□□□□□ -0.86
PDLIM3-212ENST00000620787 RYR1P21817 5038 aa9.56□□□□□ -0.88
PDLIM3-212ENST00000620787 LPAP08519 4548 aa9.55□□□□□ -0.88
PDLIM3-212ENST00000620787 KRTAP15-1Q3LI76 137 aa9.54□□□□□ -0.88
PDLIM3-212ENST00000620787 KRTAP17-1Q9BYP8 105 aa9.54□□□□□ -0.88
PDLIM3-212ENST00000620787 MT1HL1P0DM35 61 aa9.52□□□□□ -0.88
PDLIM3-212ENST00000620787 M0QZ58 72 aa9.52□□□□□ -0.89
PDLIM3-212ENST00000620787 KIAA1109Q2LD37 5005 aa9.49□□□□□ -0.89
PDLIM3-212ENST00000620787 LRP2P98164 4655 aa9.45□□□□□ -0.9
PDLIM3-212ENST00000620787 EPPK1P58107 5090 aaKnown RBP9.39□□□□□ -0.91
PDLIM3-212ENST00000620787 NDUFAF8A1L188 74 aa9.36□□□□□ -0.91
PDLIM3-212ENST00000620787 R4GN34 69 aa9.22□□□□□ -0.93
PDLIM3-212ENST00000620787 LORP23490 312 aaPredicted RBP9.13□□□□□ -0.95
PDLIM3-212ENST00000620787 ABCA13Q86UQ4 5058 aa9.1□□□□□ -0.95
PDLIM3-212ENST00000620787 MUC17Q685J3 4493 aa9.09□□□□□ -0.95
PDLIM3-212ENST00000620787 KRTAP4-5Q9BYR2 181 aa9.08□□□□□ -0.96
PDLIM3-212ENST00000620787 SEC61BP60468 96 aaKnown RBP8.99□□□□□ -0.97
PDLIM3-212ENST00000620787 PLAC4Q8WY50 150 aa8.97□□□□□ -0.97
PDLIM3-212ENST00000620787 KRTAP4-1Q9BYQ7 146 aa8.97□□□□□ -0.97
PDLIM3-212ENST00000620787 KRTAP19-2Q3LHN2 52 aa8.87□□□□□ -0.99
PDLIM3-212ENST00000620787 HERC2O95714 4834 aa8.83□□□□□ -1
PDLIM3-212ENST00000620787 PP632Q6XCG6 107 aa8.8□□□□□ -1
PDLIM3-212ENST00000620787 CAMK2N1Q7Z7J9 78 aa8.78□□□□□ -1
PDLIM3-212ENST00000620787 J3QL48 77 aa8.68□□□□□ -1.02
PDLIM3-212ENST00000620787 BIRC6Q9NR09 4857 aa8.66□□□□□ -1.02
PDLIM3-212ENST00000620787 FLGP20930 4061 aaPredicted RBP8.59□□□□□ -1.03
PDLIM3-212ENST00000620787 LUZP6Q538Z0 58 aa8.57□□□□□ -1.04
PDLIM3-212ENST00000620787 HERC1Q15751 4861 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 TNP1P09430 55 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 MUC2Q02817 5179 aa8.5□□□□□ -1.05
PDLIM3-212ENST00000620787 KRTAP23-1A1A580 65 aa8.46□□□□□ -1.06
PDLIM3-212ENST00000620787 PCLOQ9Y6V0 5065 aa8.45□□□□□ -1.06
PDLIM3-212ENST00000620787 SPRR5A0A1B0GTR4 108 aa8.36□□□□□ -1.07
PDLIM3-212ENST00000620787 HMCN2Q8NDA2 5059 aa8.33□□□□□ -1.08
PDLIM3-212ENST00000620787 A0A0A0MQY5 61 aa8.31□□□□□ -1.08
PDLIM3-212ENST00000620787 SPRR2GQ9BYE4 73 aa8.22□□□□□ -1.09
PDLIM3-212ENST00000620787 LCE2CQ5TA81 110 aa8.2□□□□□ -1.1
PDLIM3-212ENST00000620787 KRTAP19-1Q8IUB9 90 aa8.18□□□□□ -1.1
PDLIM3-212ENST00000620787 FAT4Q6V0I7 4981 aa8.1□□□□□ -1.11
PDLIM3-212ENST00000620787 LCE3AQ5TA76 89 aa8.06□□□□□ -1.12
PDLIM3-212ENST00000620787 LCE2DQ5TA82 110 aaPredicted RBP8.04□□□□□ -1.12
PDLIM3-212ENST00000620787 RNF213Q63HN8 5207 aa8.01□□□□□ -1.13
PDLIM3-212ENST00000620787 UBR4Q5T4S7 5183 aa8.01□□□□□ -1.13
PDLIM3-212ENST00000620787 M0R2T5 61 aa7.95□□□□□ -1.14
PDLIM3-212ENST00000620787 MT1HP80294 61 aa7.93□□□□□ -1.14
PDLIM3-212ENST00000620787 MT1FP04733 61 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 LOC100996750A0A140TA64 210 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 KRTAP4-6Q9BYQ5 205 aa7.91□□□□□ -1.14
PDLIM3-212ENST00000620787 MT2AP02795 61 aa7.89□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP10-10P60014 251 aa7.86□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP8-1Q8IUC2 63 aa7.85□□□□□ -1.15
PDLIM3-212ENST00000620787 KRTAP19-8Q3LI54 63 aa7.82□□□□□ -1.16
PDLIM3-212ENST00000620787 KRTAP9-8Q9BYQ0 159 aa7.81□□□□□ -1.16
PDLIM3-212ENST00000620787 KRTAP10-5P60370 271 aa7.75□□□□□ -1.17
PDLIM3-212ENST00000620787 MT1XP80297 61 aa7.73□□□□□ -1.17
PDLIM3-212ENST00000620787 MT1BP07438 61 aa7.72□□□□□ -1.17
PDLIM3-212ENST00000620787 KRTAP12-3P60328 96 aa7.64□□□□□ -1.19
PDLIM3-212ENST00000620787 KRTAP10-12P60413 245 aa7.63□□□□□ -1.19
PDLIM3-212ENST00000620787 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
PDLIM3-212ENST00000620787 KRTAP10-7P60409 375 aaPredicted RBP7.54□□□□□ -1.2
PDLIM3-212ENST00000620787 INE1O15225 51 aa7.52□□□□□ -1.21
PDLIM3-212ENST00000620787 KRTAP9-3Q9BYQ3 159 aa7.46□□□□□ -1.21
PDLIM3-212ENST00000620787 KRTAP19-5Q3LI72 72 aa7.25□□□□□ -1.25
PDLIM3-212ENST00000620787 LCE3CQ5T5A8 94 aa7.22□□□□□ -1.25
PDLIM3-212ENST00000620787 LCE2BO14633 110 aa7.13□□□□□ -1.27
PDLIM3-212ENST00000620787 USH2AO75445 5202 aa7.05□□□□□ -1.28
PDLIM3-212ENST00000620787 LCE2AQ5TA79 106 aaPredicted RBP7.04□□□□□ -1.28
PDLIM3-212ENST00000620787 KRTAP9-6A8MVA2 160 aa7.02□□□□□ -1.29
PDLIM3-212ENST00000620787 KMT2DO14686 5537 aa7.01□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP4-8A0A0G2JLE6 195 aa7□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP4-8Q9BYQ9 185 aa7□□□□□ -1.29
PDLIM3-212ENST00000620787 KRTAP19-7Q3SYF9 63 aa6.88□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-3P0C7H8 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-4Q9BYR9 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP2-1Q9BYU5 128 aa6.86□□□□□ -1.31
PDLIM3-212ENST00000620787 KRTAP4-7Q9BYR0 210 aa6.83□□□□□ -1.32
PDLIM3-212ENST00000620787 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.34
PDLIM3-212ENST00000620787 MT1LQ93083 61 aa6.7□□□□□ -1.34
PDLIM3-212ENST00000620787 MT1EP04732 61 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms