RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.19□□□□□ -2.06
SMAD4-216ENST00000593223 NCR3O14931 201 aa2.18□□□□□ -2.06
SMAD4-216ENST00000593223 A0A1B0GU69 56 aa2.17□□□□□ -2.06
SMAD4-216ENST00000593223 SERF2P84101 59 aa2.17□□□□□ -2.06
SMAD4-216ENST00000593223 KRTAP20-1Q3LI63 56 aa2.17□□□□□ -2.06
SMAD4-216ENST00000593223 SMIM11BQ8TCY0 68 aa2.17□□□□□ -2.06
SMAD4-216ENST00000593223 PLAC4Q8WY50 150 aa2.17□□□□□ -2.06
SMAD4-216ENST00000593223 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
SMAD4-216ENST00000593223 LINC00959A0A1B0GUT2 108 aa2.15□□□□□ -2.07
SMAD4-216ENST00000593223 UNQ6190/PRO20217Q6UXQ8 127 aa2.15□□□□□ -2.07
SMAD4-216ENST00000593223 Q6ZRX8 168 aa2.15□□□□□ -2.07
SMAD4-216ENST00000593223 ABRACLQ9P1F3 81 aa2.15□□□□□ -2.07
SMAD4-216ENST00000593223 KRTAP10-4P60372 401 aaPredicted RBP2.14□□□□□ -2.07
SMAD4-216ENST00000593223 DEFB114Q30KQ6 69 aa2.14□□□□□ -2.07
SMAD4-216ENST00000593223 K7EMI3 77 aa2.13□□□□□ -2.07
SMAD4-216ENST00000593223 NDUFA4O00483 81 aa2.13□□□□□ -2.07
SMAD4-216ENST00000593223 COX7BP24311 80 aa2.13□□□□□ -2.07
SMAD4-216ENST00000593223 PLNP26678 52 aa2.13□□□□□ -2.07
SMAD4-216ENST00000593223 SPINK13Q1W4C9 94 aa2.13□□□□□ -2.07
SMAD4-216ENST00000593223 GVQW2A0A096LPI5 108 aaPredicted RBP2.12□□□□□ -2.07
SMAD4-216ENST00000593223 KRTAP12-4P60329 112 aa2.12□□□□□ -2.07
SMAD4-216ENST00000593223 DEFB135Q30KP9 77 aa2.12□□□□□ -2.07
SMAD4-216ENST00000593223 UBE2DNLQ8IWF7 75 aa2.12□□□□□ -2.07
SMAD4-216ENST00000593223 SMIM27A0A1W2PRY6 76 aa2.11□□□□□ -2.07
SMAD4-216ENST00000593223 G3V318 75 aa2.11□□□□□ -2.07
SMAD4-216ENST00000593223 M0R1W7 72 aa2.11□□□□□ -2.07
SMAD4-216ENST00000593223 DEFB4AO15263 64 aa2.11□□□□□ -2.07
SMAD4-216ENST00000593223 RPL38P63173 70 aaKnown RBP2.11□□□□□ -2.07
SMAD4-216ENST00000593223 LINC00575Q6W349 94 aa2.11□□□□□ -2.07
SMAD4-216ENST00000593223 KAAG1Q9UBP8 84 aa2.09□□□□□ -2.07
SMAD4-216ENST00000593223 IGIPA6NJ69 53 aa2.08□□□□□ -2.08
SMAD4-216ENST00000593223 KRTAP6-3Q3LI67 103 aa2.08□□□□□ -2.08
SMAD4-216ENST00000593223 KCNQ1DNQ9H478 68 aa2.08□□□□□ -2.08
SMAD4-216ENST00000593223 MUC12Q9UKN1 5478 aa2.07□□□□□ -2.08
SMAD4-216ENST00000593223 KRTAP13-4Q3LI77 160 aa2.07□□□□□ -2.08
SMAD4-216ENST00000593223 SSBP3-AS1Q7Z2R9 100 aa2.07□□□□□ -2.08
SMAD4-216ENST00000593223 ETDCA0A1B0GVM5 59 aa2.06□□□□□ -2.08
SMAD4-216ENST00000593223 CPSF4LA6NMK7 179 aaKnown RBP2.06□□□□□ -2.08
SMAD4-216ENST00000593223 MUC17Q685J3 4493 aa2.05□□□□□ -2.08
SMAD4-216ENST00000593223 DEFB131BA0A096LNP1 70 aa2.05□□□□□ -2.08
SMAD4-216ENST00000593223 LINC01546A6NGU7 62 aa2.05□□□□□ -2.08
SMAD4-216ENST00000593223 I3L3M4 83 aa2.05□□□□□ -2.08
SMAD4-216ENST00000593223 ARL14EPLP0DKL9 152 aa2.05□□□□□ -2.08
SMAD4-216ENST00000593223 RPL37P61927 97 aaKnown RBP2.05□□□□□ -2.08
SMAD4-216ENST00000593223 KMT2DO14686 5537 aa2.04□□□□□ -2.08
SMAD4-216ENST00000593223 MINOS1Q5TGZ0 78 aa2.03□□□□□ -2.08
SMAD4-216ENST00000593223 H0YGX0 51 aa2.02□□□□□ -2.09
SMAD4-216ENST00000593223 ANGP03950 147 aaKnown RBP2.01□□□□□ -2.09
SMAD4-216ENST00000593223 Q6ZSA8 131 aa1.99□□□□□ -2.09
SMAD4-216ENST00000593223 SNRPGP62308 76 aaKnown RBP1.98□□□□□ -2.09
SMAD4-216ENST00000593223 KRTAP21-2Q3LI59 83 aa1.98□□□□□ -2.09
SMAD4-216ENST00000593223 KRTAP2-3P0C7H8 128 aa1.97□□□□□ -2.09
SMAD4-216ENST00000593223 KRTAP2-4Q9BYR9 128 aa1.97□□□□□ -2.09
SMAD4-216ENST00000593223 FXYD6P3P58550 94 aa1.96□□□□□ -2.1
SMAD4-216ENST00000593223 PCOTHQ58A44 107 aa1.96□□□□□ -2.1
SMAD4-216ENST00000593223 CRIPTQ9P021 101 aa1.96□□□□□ -2.1
SMAD4-216ENST00000593223 HTN3P15516 51 aa1.95□□□□□ -2.1
SMAD4-216ENST00000593223 RPS27LQ71UM5 84 aaKnown RBP1.95□□□□□ -2.1
SMAD4-216ENST00000593223 MDN1Q9NU22 5596 aa1.95□□□□□ -2.1
SMAD4-216ENST00000593223 USMG5Q96IX5 58 aa1.94□□□□□ -2.1
SMAD4-216ENST00000593223 CRIP1P50238 77 aa1.93□□□□□ -2.1
SMAD4-216ENST00000593223 SPINK4O60575 86 aa1.92□□□□□ -2.1
SMAD4-216ENST00000593223 MT1HP80294 61 aa1.92□□□□□ -2.1
SMAD4-216ENST00000593223 COX6B2Q6YFQ2 88 aa1.92□□□□□ -2.1
SMAD4-216ENST00000593223 TIMM8BQ9Y5J9 83 aaPredicted RBP1.92□□□□□ -2.1
SMAD4-216ENST00000593223 NDUFA3O95167 84 aa1.91□□□□□ -2.1
SMAD4-216ENST00000593223 LEAP2Q969E1 77 aa1.91□□□□□ -2.1
SMAD4-216ENST00000593223 PIGYQ3MUY2 71 aa1.9□□□□□ -2.11
SMAD4-216ENST00000593223 KRTAP4-1Q9BYQ7 146 aa1.9□□□□□ -2.11
SMAD4-216ENST00000593223 TP53AIP1Q9HCN2 124 aa1.9□□□□□ -2.11
SMAD4-216ENST00000593223 TMEM167BQ9NRX6 74 aa1.9□□□□□ -2.11
SMAD4-216ENST00000593223 K7EQZ3 153 aa1.89□□□□□ -2.11
SMAD4-216ENST00000593223 SPART-AS1P0CW21 52 aa1.89□□□□□ -2.11
SMAD4-216ENST00000593223 LINC00158P58513 81 aa1.89□□□□□ -2.11
SMAD4-216ENST00000593223 CDKN2A-AS1Q9UH64 79 aa1.89□□□□□ -2.11
SMAD4-216ENST00000593223 I3L2K1 104 aa1.88□□□□□ -2.11
SMAD4-216ENST00000593223 Q8IZM0 81 aa1.88□□□□□ -2.11
SMAD4-216ENST00000593223 KRTAP2-1Q9BYU5 128 aa1.88□□□□□ -2.11
SMAD4-216ENST00000593223 MRPL34Q9BQ48 92 aaKnown RBP1.87□□□□□ -2.11
SMAD4-216ENST00000593223 KRTAP19-2Q3LHN2 52 aa1.86□□□□□ -2.11
SMAD4-216ENST00000593223 CNFNQ9BYD5 112 aa1.86□□□□□ -2.11
SMAD4-216ENST00000593223 KRTAP12-1P59990 96 aa1.85□□□□□ -2.11
SMAD4-216ENST00000593223 AHNAK2Q8IVF2 5795 aa1.83□□□□□ -2.12
SMAD4-216ENST00000593223 H3BUA1 57 aa1.83□□□□□ -2.12
SMAD4-216ENST00000593223 LINC00308Q8TCZ7 52 aa1.83□□□□□ -2.12
SMAD4-216ENST00000593223 FLGP20930 4061 aaPredicted RBP1.82□□□□□ -2.12
SMAD4-216ENST00000593223 M0R2T5 61 aa1.82□□□□□ -2.12
SMAD4-216ENST00000593223 DEFB131AP59861 70 aa1.81□□□□□ -2.12
SMAD4-216ENST00000593223 COX6A2Q02221 97 aa1.81□□□□□ -2.12
SMAD4-216ENST00000593223 KRTAP19-6Q3LI70 58 aa1.81□□□□□ -2.12
SMAD4-216ENST00000593223 DSTQ03001 7570 aaKnown RBP1.81□□□□□ -2.12
SMAD4-216ENST00000593223 APELAP0DMC3 54 aa1.8□□□□□ -2.12
SMAD4-216ENST00000593223 DEFB130BP0DP73 79 aa1.8□□□□□ -2.12
SMAD4-216ENST00000593223 DEFB130AP0DP74 79 aa1.8□□□□□ -2.12
SMAD4-216ENST00000593223 RPS27P42677 84 aaKnown RBP1.8□□□□□ -2.12
SMAD4-216ENST00000593223 SMIM2Q9BVW6 85 aa1.8□□□□□ -2.12
SMAD4-216ENST00000593223 A0A096LPF7 62 aa1.77□□□□□ -2.13
SMAD4-216ENST00000593223 SPINK9Q5DT21 86 aa1.77□□□□□ -2.13
SMAD4-216ENST00000593223 SPINK6Q6UWN8 80 aa1.77□□□□□ -2.13
SMAD4-216ENST00000593223 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms