RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ETDBQ3ZM63 59 aa-2.56□□□□□ -2.82
SS18-214ENST00000580003 ACBD7Q8N6N7 88 aa-2.56□□□□□ -2.82
SS18-214ENST00000580003 ARHGAP35Q9NRY4 1499 aa-2.57□□□□□ -2.82
SS18-214ENST00000580003 ATOX1O00244 68 aa-2.57□□□□□ -2.82
SS18-214ENST00000580003 S100A8P05109 93 aa-2.57□□□□□ -2.82
SS18-214ENST00000580003 CD52P31358 61 aa-2.57□□□□□ -2.82
SS18-214ENST00000580003 GLI2P10070 1586 aa-2.57□□□□□ -2.82
SS18-214ENST00000580003 RRBP1Q9P2E9 1410 aaKnown RBP-2.58□□□□□ -2.82
SS18-214ENST00000580003 IFI27P40305 119 aaPredicted RBP-2.58□□□□□ -2.82
SS18-214ENST00000580003 C2orf88Q9BSF0 95 aa-2.58□□□□□ -2.82
SS18-214ENST00000580003 TTC37Q6PGP7 1564 aa-2.58□□□□□ -2.82
SS18-214ENST00000580003 FANCAO15360 1455 aa-2.58□□□□□ -2.82
SS18-214ENST00000580003 VPS8Q8N3P4 1428 aa-2.59□□□□□ -2.82
SS18-214ENST00000580003 MRPL33O75394 65 aaKnown RBP-2.59□□□□□ -2.82
SS18-214ENST00000580003 PMCHL2Q9BQD1 86 aa-2.59□□□□□ -2.82
SS18-214ENST00000580003 DIP2AQ14689 1571 aa-2.59□□□□□ -2.82
SS18-214ENST00000580003 EPRSP07814 1512 aaKnown RBP-2.59□□□□□ -2.82
SS18-214ENST00000580003 MROH1Q8NDA8 1641 aa-2.6□□□□□ -2.83
SS18-214ENST00000580003 WFDC10BQ8IUB3 73 aa-2.61□□□□□ -2.83
SS18-214ENST00000580003 LINC00032P0C843 101 aa-2.62□□□□□ -2.83
SS18-214ENST00000580003 PLGLAQ15195 96 aa-2.62□□□□□ -2.83
SS18-214ENST00000580003 ABRACLQ9P1F3 81 aa-2.62□□□□□ -2.83
SS18-214ENST00000580003 ALS2Q96Q42 1657 aa-2.63□□□□□ -2.83
SS18-214ENST00000580003 UMAD1C9J7I0 102 aa-2.63□□□□□ -2.83
SS18-214ENST00000580003 HTN1P15515 57 aa-2.63□□□□□ -2.83
SS18-214ENST00000580003 RABAC1Q9UI14 185 aa-2.63□□□□□ -2.83
SS18-214ENST00000580003 TIAM1Q13009 1591 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 ETDCA0A1B0GVM5 59 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 SMIM27A0A1W2PRY6 76 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 NDUFB1O75438 58 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 UBL5Q9BZL1 73 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 NFAT5O94916 1531 aa-2.64□□□□□ -2.83
SS18-214ENST00000580003 MROH2AA6NES4 1674 aa-2.65□□□□□ -2.83
SS18-214ENST00000580003 A0A096LNI7 61 aa-2.65□□□□□ -2.83
SS18-214ENST00000580003 UQCRHLA0A096LP55 91 aa-2.65□□□□□ -2.83
SS18-214ENST00000580003 NREPQ16612 68 aa-2.65□□□□□ -2.83
SS18-214ENST00000580003 AKAP12Q02952 1782 aa-2.65□□□□□ -2.83
SS18-214ENST00000580003 HFM1A2PYH4 1435 aa-2.66□□□□□ -2.83
SS18-214ENST00000580003 ABCC6O95255 1503 aa-2.66□□□□□ -2.84
SS18-214ENST00000580003 CYB5AP00167 134 aa-2.66□□□□□ -2.84
SS18-214ENST00000580003 RHPN1-AS1Q9BWJ2 59 aa-2.66□□□□□ -2.84
SS18-214ENST00000580003 RALGAPBQ86X10 1494 aa-2.66□□□□□ -2.84
SS18-214ENST00000580003 ANKARQ7Z5J8 1434 aa-2.68□□□□□ -2.84
SS18-214ENST00000580003 CLTCQ00610 1675 aaKnown RBP-2.68□□□□□ -2.84
SS18-214ENST00000580003 HMGN2P05204 90 aaKnown RBP-2.68□□□□□ -2.84
SS18-214ENST00000580003 RBP2P50120 134 aa-2.68□□□□□ -2.84
SS18-214ENST00000580003 DEFB131AP59861 70 aa-2.68□□□□□ -2.84
SS18-214ENST00000580003 URB2Q14146 1524 aaKnown RBP-2.68□□□□□ -2.84
SS18-214ENST00000580003 MADDQ8WXG6 1647 aa-2.69□□□□□ -2.84
SS18-214ENST00000580003 COL5A1-AS1Q5SY13 56 aa-2.7□□□□□ -2.84
SS18-214ENST00000580003 DUOX2Q9NRD8 1548 aa-2.71□□□□□ -2.84
SS18-214ENST00000580003 LINC01556Q5JQF7 62 aa-2.72□□□□□ -2.84
SS18-214ENST00000580003 ENHOQ6UWT2 76 aa-2.72□□□□□ -2.84
SS18-214ENST00000580003 DEFB124Q8NES8 71 aa-2.72□□□□□ -2.84
SS18-214ENST00000580003 LINC00308Q8TCZ7 52 aa-2.72□□□□□ -2.84
SS18-214ENST00000580003 MYMXA0A1B0GTQ4 84 aa-2.73□□□□□ -2.85
SS18-214ENST00000580003 H3BUT2 72 aa-2.73□□□□□ -2.85
SS18-214ENST00000580003 DEFB114Q30KQ6 69 aa-2.73□□□□□ -2.85
SS18-214ENST00000580003 DPY30Q9C005 99 aa-2.73□□□□□ -2.85
SS18-214ENST00000580003 MYO3AQ8NEV4 1616 aa-2.73□□□□□ -2.85
SS18-214ENST00000580003 DDX60Q8IY21 1712 aaKnown RBP-2.73□□□□□ -2.85
SS18-214ENST00000580003 KDM5DQ9BY66 1539 aa-2.75□□□□□ -2.85
SS18-214ENST00000580003 LMTK2Q8IWU2 1503 aa-2.76□□□□□ -2.85
SS18-214ENST00000580003 CEBPZOSA8MTT3 80 aa-2.76□□□□□ -2.85
SS18-214ENST00000580003 LINC00587B1AMM8 73 aa-2.76□□□□□ -2.85
SS18-214ENST00000580003 SARNPP82979 210 aaKnown RBP-2.76□□□□□ -2.85
SS18-214ENST00000580003 NMES1Q9C002 83 aa-2.76□□□□□ -2.85
SS18-214ENST00000580003 FAUP35544 74 aaKnown RBP-2.77□□□□□ -2.85
SS18-214ENST00000580003 SMIM2Q9BVW6 85 aa-2.77□□□□□ -2.85
SS18-214ENST00000580003 EFCAB6Q5THR3 1501 aa-2.78□□□□□ -2.85
SS18-214ENST00000580003 GYPAP02724 150 aa-2.78□□□□□ -2.85
SS18-214ENST00000580003 LINC01590Q5TEZ4 76 aa-2.78□□□□□ -2.85
SS18-214ENST00000580003 SYCP2Q9BX26 1530 aa-2.78□□□□□ -2.86
SS18-214ENST00000580003 TMEM167BQ9NRX6 74 aa-2.8□□□□□ -2.86
SS18-214ENST00000580003 SMIM11AP58511 58 aa-2.81□□□□□ -2.86
SS18-214ENST00000580003 S100A10P60903 97 aa-2.81□□□□□ -2.86
SS18-214ENST00000580003 PEA15Q15121 130 aa-2.81□□□□□ -2.86
SS18-214ENST00000580003 PEG3Q9GZU2 1588 aa-2.82□□□□□ -2.86
SS18-214ENST00000580003 DCAF1Q9Y4B6 1507 aa-2.82□□□□□ -2.86
SS18-214ENST00000580003 CEP162Q5TB80 1403 aa-2.82□□□□□ -2.86
SS18-214ENST00000580003 SMIM13P0DJ93 91 aa-2.83□□□□□ -2.86
SS18-214ENST00000580003 TRPM2O94759 1503 aa-2.83□□□□□ -2.86
SS18-214ENST00000580003 TFF3Q07654 80 aa-2.84□□□□□ -2.86
SS18-214ENST00000580003 LINC00643Q86TS7 51 aa-2.84□□□□□ -2.86
SS18-214ENST00000580003 RB1CC1Q8TDY2 1594 aa-2.84□□□□□ -2.86
SS18-214ENST00000580003 ADCY10Q96PN6 1610 aa-2.85□□□□□ -2.87
SS18-214ENST00000580003 PVALEFA0A1B0GWK0 134 aa-2.85□□□□□ -2.87
SS18-214ENST00000580003 K7EMI3 77 aa-2.85□□□□□ -2.87
SS18-214ENST00000580003 ATP5EP2Q5VTU8 51 aa-2.85□□□□□ -2.87
SS18-214ENST00000580003 SNHG12Q9BXW3 62 aa-2.86□□□□□ -2.87
SS18-214ENST00000580003 DEFB121Q5J5C9 76 aa-2.87□□□□□ -2.87
SS18-214ENST00000580003 TOMM7Q9P0U1 55 aa-2.87□□□□□ -2.87
SS18-214ENST00000580003 ABCC3O15438 1527 aa-2.88□□□□□ -2.87
SS18-214ENST00000580003 A0A087WXM4 84 aa-2.88□□□□□ -2.87
SS18-214ENST00000580003 M0R1W7 72 aa-2.89□□□□□ -2.87
SS18-214ENST00000580003 SNRPFP62306 86 aaKnown RBP-2.89□□□□□ -2.87
SS18-214ENST00000580003 ABCC1P33527 1531 aa-2.89□□□□□ -2.87
SS18-214ENST00000580003 CLTCL1P53675 1640 aa-2.9□□□□□ -2.87
SS18-214ENST00000580003 IGIPA6NJ69 53 aa-2.9□□□□□ -2.87
SS18-214ENST00000580003 PRXQ9BXM0 1461 aa-2.9□□□□□ -2.87
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms