RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NREPQ16612 68 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 C1orf137Q5JT78 98 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 LINC00575Q6W349 94 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 KRTAP13-1Q8IUC0 172 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 OBSCN-AS1Q96MR7 158 aa3.93□□□□□ -1.78
VPS53-217ENST00000575100 UBR4Q5T4S7 5183 aa3.92□□□□□ -1.78
VPS53-217ENST00000575100 ETDCA0A1B0GVM5 59 aa3.92□□□□□ -1.78
VPS53-217ENST00000575100 A0A1W2PNM2 257 aa3.92□□□□□ -1.78
VPS53-217ENST00000575100 H0YGX0 51 aa3.91□□□□□ -1.78
VPS53-217ENST00000575100 ORMDL1Q9P0S3 153 aa3.91□□□□□ -1.78
VPS53-217ENST00000575100 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.89□□□□□ -1.79
VPS53-217ENST00000575100 Q6ZQY7 126 aa3.89□□□□□ -1.79
VPS53-217ENST00000575100 MT1HL1P0DM35 61 aa3.88□□□□□ -1.79
VPS53-217ENST00000575100 RPL37AP61513 92 aaKnown RBP3.88□□□□□ -1.79
VPS53-217ENST00000575100 SPAG11AQ6PDA7 123 aa3.88□□□□□ -1.79
VPS53-217ENST00000575100 UBL5Q9BZL1 73 aa3.88□□□□□ -1.79
VPS53-217ENST00000575100 DEFB105AQ8NG35 78 aa3.87□□□□□ -1.79
VPS53-217ENST00000575100 PRO2289Q9P1D8 64 aa3.87□□□□□ -1.79
VPS53-217ENST00000575100 ANAPC11Q9NYG5 84 aa3.87□□□□□ -1.79
VPS53-217ENST00000575100 LINC01558Q9Y6Z2 57 aa3.85□□□□□ -1.79
VPS53-217ENST00000575100 TNXBP22105 4242 aa3.85□□□□□ -1.79
VPS53-217ENST00000575100 IGLV5-48A0A075B6I7 105 aa3.85□□□□□ -1.79
VPS53-217ENST00000575100 SPRR4Q96PI1 79 aa3.84□□□□□ -1.79
VPS53-217ENST00000575100 NDUFB1O75438 58 aa3.83□□□□□ -1.8
VPS53-217ENST00000575100 KRTAP1-4P0C5Y4 121 aa3.83□□□□□ -1.8
VPS53-217ENST00000575100 A0A0G2JQZ4 141 aa3.82□□□□□ -1.8
VPS53-217ENST00000575100 HRES1P13985 223 aa3.82□□□□□ -1.8
VPS53-217ENST00000575100 SPRR1BP22528 89 aa3.82□□□□□ -1.8
VPS53-217ENST00000575100 ZCCHC13Q8WW36 166 aaKnown RBP3.82□□□□□ -1.8
VPS53-217ENST00000575100 LINC00208Q96KT6 92 aa3.82□□□□□ -1.8
VPS53-217ENST00000575100 DSCR10P59022 87 aa3.81□□□□□ -1.8
VPS53-217ENST00000575100 SPINK6Q6UWN8 80 aa3.8□□□□□ -1.8
VPS53-217ENST00000575100 LRP2P98164 4655 aa3.8□□□□□ -1.8
VPS53-217ENST00000575100 RNF213Q63HN8 5207 aa3.8□□□□□ -1.8
VPS53-217ENST00000575100 SPINK7P58062 85 aa3.8□□□□□ -1.8
VPS53-217ENST00000575100 KRTAP13-2Q52LG2 175 aa3.8□□□□□ -1.8
VPS53-217ENST00000575100 JMJD7-PLA2G4BH0Y9G9 81 aa3.79□□□□□ -1.8
VPS53-217ENST00000575100 DMAC1Q96GE9 116 aa3.79□□□□□ -1.8
VPS53-217ENST00000575100 IGFL1Q6UW32 110 aa3.76□□□□□ -1.81
VPS53-217ENST00000575100 KRTAP10-8P60410 259 aa3.76□□□□□ -1.81
VPS53-217ENST00000575100 H0Y9P7 68 aa3.74□□□□□ -1.81
VPS53-217ENST00000575100 PDE6GP18545 87 aa3.74□□□□□ -1.81
VPS53-217ENST00000575100 LOC110117498A0A087WWA1 95 aa3.74□□□□□ -1.81
VPS53-217ENST00000575100 Q8N9L7 120 aa3.74□□□□□ -1.81
VPS53-217ENST00000575100 TPRXLQ17RH7 258 aa3.71□□□□□ -1.82
VPS53-217ENST00000575100 SPATA8Q6RVD6 105 aa3.71□□□□□ -1.82
VPS53-217ENST00000575100 SSBP3-AS1Q7Z2R9 100 aa3.71□□□□□ -1.82
VPS53-217ENST00000575100 UQCR11O14957 56 aa3.69□□□□□ -1.82
VPS53-217ENST00000575100 LINC00304Q8N9R0 145 aa3.67□□□□□ -1.82
VPS53-217ENST00000575100 COA5Q86WW8 74 aa3.66□□□□□ -1.82
VPS53-217ENST00000575100 Q96NJ1 140 aa3.66□□□□□ -1.82
VPS53-217ENST00000575100 LPAP08519 4548 aa3.66□□□□□ -1.82
VPS53-217ENST00000575100 SPINK1P00995 79 aa3.64□□□□□ -1.83
VPS53-217ENST00000575100 LINC00472Q9H8W2 130 aa3.64□□□□□ -1.83
VPS53-217ENST00000575100 IGKV4-1P06312 121 aa3.63□□□□□ -1.83
VPS53-217ENST00000575100 MT3P25713 68 aa3.62□□□□□ -1.83
VPS53-217ENST00000575100 RPS29P62273 56 aaKnown RBP3.61□□□□□ -1.83
VPS53-217ENST00000575100 LCE1AQ5T7P2 110 aa3.61□□□□□ -1.83
VPS53-217ENST00000575100 K7EQZ3 153 aa3.59□□□□□ -1.83
VPS53-217ENST00000575100 FAT4Q6V0I7 4981 aa3.58□□□□□ -1.84
VPS53-217ENST00000575100 MUC17Q685J3 4493 aa3.56□□□□□ -1.84
VPS53-217ENST00000575100 C9orf92A6NGG3 77 aa3.54□□□□□ -1.84
VPS53-217ENST00000575100 MUC2Q02817 5179 aa3.54□□□□□ -1.84
VPS53-217ENST00000575100 MMP24-AS1A0A0U1RRL7 71 aa3.53□□□□□ -1.84
VPS53-217ENST00000575100 A0A1B0GU69 56 aa3.53□□□□□ -1.84
VPS53-217ENST00000575100 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
VPS53-217ENST00000575100 WFDC13Q8IUB5 93 aa3.51□□□□□ -1.85
VPS53-217ENST00000575100 KRTAP13-3Q3SY46 172 aa3.51□□□□□ -1.85
VPS53-217ENST00000575100 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
VPS53-217ENST00000575100 MRPL34Q9BQ48 92 aaKnown RBP3.47□□□□□ -1.85
VPS53-217ENST00000575100 INE1O15225 51 aa3.42□□□□□ -1.86
VPS53-217ENST00000575100 ACYP2P14621 99 aa3.42□□□□□ -1.86
VPS53-217ENST00000575100 RPL37P61927 97 aaKnown RBP3.42□□□□□ -1.86
VPS53-217ENST00000575100 CRCT1Q9UGL9 99 aa3.41□□□□□ -1.86
VPS53-217ENST00000575100 KRTAP4-1Q9BYQ7 146 aa3.39□□□□□ -1.87
VPS53-217ENST00000575100 PCOTHQ58A44 107 aa3.38□□□□□ -1.87
VPS53-217ENST00000575100 TP53AIP1Q9HCN2 124 aa3.38□□□□□ -1.87
VPS53-217ENST00000575100 KRTAP19-2Q3LHN2 52 aa3.33□□□□□ -1.88
VPS53-217ENST00000575100 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.32□□□□□ -1.88
VPS53-217ENST00000575100 FSIP2Q5CZC0 6907 aa3.32□□□□□ -1.88
VPS53-217ENST00000575100 MT1HP80294 61 aa3.31□□□□□ -1.88
VPS53-217ENST00000575100 CRIPTQ9P021 101 aa3.28□□□□□ -1.88
VPS53-217ENST00000575100 KRTAP10-6P60371 365 aaPredicted RBP3.27□□□□□ -1.89
VPS53-217ENST00000575100 PLAC4Q8WY50 150 aa3.23□□□□□ -1.89
VPS53-217ENST00000575100 FLGP20930 4061 aaPredicted RBP3.22□□□□□ -1.89
VPS53-217ENST00000575100 COX6B2Q6YFQ2 88 aa3.21□□□□□ -1.9
VPS53-217ENST00000575100 M0R2T5 61 aa3.18□□□□□ -1.9
VPS53-217ENST00000575100 LCE3CQ5T5A8 94 aa3.18□□□□□ -1.9
VPS53-217ENST00000575100 SPRR5A0A1B0GTR4 108 aa3.15□□□□□ -1.91
VPS53-217ENST00000575100 H0YAA0 97 aa3.15□□□□□ -1.91
VPS53-217ENST00000575100 H1FX-AS1Q4G0G2 97 aa3.15□□□□□ -1.91
VPS53-217ENST00000575100 PP632Q6XCG6 107 aa3.15□□□□□ -1.91
VPS53-217ENST00000575100 KRTAP10-12P60413 245 aa3.14□□□□□ -1.91
VPS53-217ENST00000575100 KRTAP13-4Q3LI77 160 aa3.12□□□□□ -1.91
VPS53-217ENST00000575100 SSPOA2VEC9 5147 aa3.12□□□□□ -1.91
VPS53-217ENST00000575100 USH2AO75445 5202 aa3.11□□□□□ -1.91
VPS53-217ENST00000575100 S4R3F8 94 aa3.11□□□□□ -1.91
VPS53-217ENST00000575100 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
VPS53-217ENST00000575100 KRTAP10-7P60409 375 aaPredicted RBP3.07□□□□□ -1.92
VPS53-217ENST00000575100 FCGBPQ9Y6R7 5405 aaPredicted RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms