RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 NF1P21359 2839 aa1.51□□□□□ -2.17
NUP88-209ENST00000574855 ATRQ13535 2644 aa1.51□□□□□ -2.17
NUP88-209ENST00000574855 NBPF19A0A087WUL8 3843 aa1.51□□□□□ -2.17
NUP88-209ENST00000574855 NSD1Q96L73 2696 aaPredicted RBP1.51□□□□□ -2.17
NUP88-209ENST00000574855 OTOGQ6ZRI0 2925 aa1.5□□□□□ -2.17
NUP88-209ENST00000574855 NBEAL2Q6ZNJ1 2754 aa1.5□□□□□ -2.17
NUP88-209ENST00000574855 CUBNO60494 3623 aa1.5□□□□□ -2.17
NUP88-209ENST00000574855 KRTAP21-3Q3LHN1 58 aa1.5□□□□□ -2.17
NUP88-209ENST00000574855 AKAP9Q99996 3911 aa1.5□□□□□ -2.17
NUP88-209ENST00000574855 MMP24-AS1A0A0U1RRL7 71 aa1.49□□□□□ -2.17
NUP88-209ENST00000574855 MRPL34Q9BQ48 92 aaKnown RBP1.49□□□□□ -2.17
NUP88-209ENST00000574855 GCN1Q92616 2671 aaKnown RBP1.48□□□□□ -2.17
NUP88-209ENST00000574855 SPINK6Q6UWN8 80 aa1.47□□□□□ -2.17
NUP88-209ENST00000574855 NIPBLQ6KC79 2804 aaeCLIP1.47□□□□□ -2.17
NUP88-209ENST00000574855 SPINK1P00995 79 aa1.46□□□□□ -2.18
NUP88-209ENST00000574855 PCOTHQ58A44 107 aa1.46□□□□□ -2.18
NUP88-209ENST00000574855 Q6ZSA8 131 aa1.46□□□□□ -2.18
NUP88-209ENST00000574855 VWFP04275 2813 aa1.45□□□□□ -2.18
NUP88-209ENST00000574855 BAHCC1Q9P281 2608 aa1.45□□□□□ -2.18
NUP88-209ENST00000574855 KRTAP12-4P60329 112 aa1.45□□□□□ -2.18
NUP88-209ENST00000574855 RPL37P61927 97 aaKnown RBP1.45□□□□□ -2.18
NUP88-209ENST00000574855 TRRAPQ9Y4A5 3859 aa1.45□□□□□ -2.18
NUP88-209ENST00000574855 TENM1Q9UKZ4 2725 aa1.45□□□□□ -2.18
NUP88-209ENST00000574855 RPS29P62273 56 aaKnown RBP1.44□□□□□ -2.18
NUP88-209ENST00000574855 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
NUP88-209ENST00000574855 MAST4O15021 2626 aa1.44□□□□□ -2.18
NUP88-209ENST00000574855 FLNBO75369 2602 aaKnown RBP1.44□□□□□ -2.18
NUP88-209ENST00000574855 STAB1Q9NY15 2570 aa1.44□□□□□ -2.18
NUP88-209ENST00000574855 COL6A5A8TX70 2615 aa1.43□□□□□ -2.18
NUP88-209ENST00000574855 KRTAP12-3P60328 96 aa1.43□□□□□ -2.18
NUP88-209ENST00000574855 TENM3Q9P273 2699 aa1.42□□□□□ -2.18
NUP88-209ENST00000574855 MGAM2Q2M2H8 2515 aa1.41□□□□□ -2.18
NUP88-209ENST00000574855 KRTAP12-1P59990 96 aa1.41□□□□□ -2.18
NUP88-209ENST00000574855 NOTCH1P46531 2555 aa1.41□□□□□ -2.18
NUP88-209ENST00000574855 DNAH3Q8TD57 4116 aa1.39□□□□□ -2.19
NUP88-209ENST00000574855 PKD1L1Q8TDX9 2849 aa1.39□□□□□ -2.19
NUP88-209ENST00000574855 SMR3BP02814 79 aaPredicted RBP1.39□□□□□ -2.19
NUP88-209ENST00000574855 HUWE1Q7Z6Z7 4374 aaKnown RBP1.39□□□□□ -2.19
NUP88-209ENST00000574855 CRIPTQ9P021 101 aa1.38□□□□□ -2.19
NUP88-209ENST00000574855 NBEAL1Q6ZS30 2694 aa1.38□□□□□ -2.19
NUP88-209ENST00000574855 STAB2Q8WWQ8 2551 aa1.37□□□□□ -2.19
NUP88-209ENST00000574855 FLG2Q5D862 2391 aaPredicted RBP1.36□□□□□ -2.19
NUP88-209ENST00000574855 C9orf92A6NGG3 77 aa1.36□□□□□ -2.19
NUP88-209ENST00000574855 KRTAP6-3Q3LI67 103 aa1.36□□□□□ -2.19
NUP88-209ENST00000574855 ANK2Q01484 3957 aa1.36□□□□□ -2.19
NUP88-209ENST00000574855 CMYA5Q8N3K9 4069 aa1.35□□□□□ -2.19
NUP88-209ENST00000574855 DNAH9Q9NYC9 4486 aa1.34□□□□□ -2.19
NUP88-209ENST00000574855 KRTAP10-4P60372 401 aaPredicted RBP1.34□□□□□ -2.19
NUP88-209ENST00000574855 Q5VSD8 79 aa1.34□□□□□ -2.19
NUP88-209ENST00000574855 COX6B2Q6YFQ2 88 aa1.34□□□□□ -2.19
NUP88-209ENST00000574855 DNAH1Q9P2D7 4330 aa1.33□□□□□ -2.2
NUP88-209ENST00000574855 DYNC2H1Q8NCM8 4307 aaKnown RBP1.32□□□□□ -2.2
NUP88-209ENST00000574855 COL7A1Q02388 2944 aa1.32□□□□□ -2.2
NUP88-209ENST00000574855 PLECQ15149 4684 aaKnown RBP1.32□□□□□ -2.2
NUP88-209ENST00000574855 STARD9Q9P2P6 4700 aa1.31□□□□□ -2.2
NUP88-209ENST00000574855 TENM2Q9NT68 2774 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 CSMD3Q7Z407 3707 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 H1FX-AS1Q4G0G2 97 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 DNAH10Q8IVF4 4471 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 VPS13DQ5THJ4 4388 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 TGP01266 2768 aa1.3□□□□□ -2.2
NUP88-209ENST00000574855 DNAH7Q8WXX0 4024 aa1.29□□□□□ -2.2
NUP88-209ENST00000574855 SRRM2Q9UQ35 2752 aaKnown RBP1.29□□□□□ -2.2
NUP88-209ENST00000574855 S4R3F8 94 aa1.29□□□□□ -2.2
NUP88-209ENST00000574855 KMT2AQ03164 3969 aa1.29□□□□□ -2.2
NUP88-209ENST00000574855 MEGF8Q7Z7M0 2845 aa1.28□□□□□ -2.2
NUP88-209ENST00000574855 LYSTQ99698 3801 aa1.28□□□□□ -2.2
NUP88-209ENST00000574855 C10orf95Q9H7T3 257 aa1.28□□□□□ -2.2
NUP88-209ENST00000574855 FBN3Q75N90 2809 aa1.28□□□□□ -2.2
NUP88-209ENST00000574855 DNAH17Q9UFH2 4485 aa1.27□□□□□ -2.21
NUP88-209ENST00000574855 ALMS1Q8TCU4 4167 aa1.27□□□□□ -2.21
NUP88-209ENST00000574855 MT1HL1P0DM35 61 aa1.27□□□□□ -2.21
NUP88-209ENST00000574855 CRCT1Q9UGL9 99 aa1.27□□□□□ -2.21
NUP88-209ENST00000574855 PRKDCP78527 4128 aaKnown RBP1.27□□□□□ -2.21
NUP88-209ENST00000574855 HECTD4Q9Y4D8 3996 aa1.27□□□□□ -2.21
NUP88-209ENST00000574855 DNAH6Q9C0G6 4158 aa1.26□□□□□ -2.21
NUP88-209ENST00000574855 H0YAA0 97 aa1.26□□□□□ -2.21
NUP88-209ENST00000574855 M0QZ58 72 aa1.25□□□□□ -2.21
NUP88-209ENST00000574855 DNAH8Q96JB1 4490 aa1.25□□□□□ -2.21
NUP88-209ENST00000574855 DNAH2Q9P225 4427 aa1.25□□□□□ -2.21
NUP88-209ENST00000574855 FRAS1Q86XX4 4008 aa1.24□□□□□ -2.21
NUP88-209ENST00000574855 DNAH11Q96DT5 4516 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 DNHD1Q96M86 4753 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 HYDINQ4G0P3 5121 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 A0A0D9SG42 100 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 DNAH5Q8TE73 4624 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 LRP1BQ9NZR2 4599 aa1.23□□□□□ -2.21
NUP88-209ENST00000574855 VPS13BQ7Z7G8 4022 aa1.22□□□□□ -2.21
NUP88-209ENST00000574855 PKD1P98161 4303 aa1.21□□□□□ -2.21
NUP88-209ENST00000574855 DMBT1Q9UGM3 2413 aaPredicted RBP1.21□□□□□ -2.22
NUP88-209ENST00000574855 FAT2Q9NYQ8 4349 aa1.21□□□□□ -2.22
NUP88-209ENST00000574855 KRTAP4-1Q9BYQ7 146 aa1.21□□□□□ -2.22
NUP88-209ENST00000574855 SACSQ9NZJ4 4579 aa1.2□□□□□ -2.22
NUP88-209ENST00000574855 DYNC1H1Q14204 4646 aaKnown RBP1.19□□□□□ -2.22
NUP88-209ENST00000574855 RYR2Q92736 4967 aa1.17□□□□□ -2.22
NUP88-209ENST00000574855 PKHD1P08F94 4074 aa1.16□□□□□ -2.22
NUP88-209ENST00000574855 APOBP04114 4563 aaKnown RBP1.16□□□□□ -2.22
NUP88-209ENST00000574855 RYR1P21817 5038 aa1.15□□□□□ -2.22
NUP88-209ENST00000574855 FAT1Q14517 4588 aa1.15□□□□□ -2.23
NUP88-209ENST00000574855 FCGBPQ9Y6R7 5405 aaPredicted RBP1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms