RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 DNAH6Q9C0G6 4158 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 SPG11Q96JI7 2443 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 CEP290O15078 2479 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 DNAH2Q9P225 4427 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 DNAH17Q9UFH2 4485 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 C9orf92A6NGG3 77 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 COL6A5A8TX70 2615 aa1.29□□□□□ -2.2
NUP88-208ENST00000574087 PRKDCP78527 4128 aaKnown RBP1.28□□□□□ -2.2
NUP88-208ENST00000574087 NIPBLQ6KC79 2804 aaeCLIP1.28□□□□□ -2.2
NUP88-208ENST00000574087 EYSQ5T1H1 3165 aa1.28□□□□□ -2.21
NUP88-208ENST00000574087 CUBNO60494 3623 aa1.27□□□□□ -2.21
NUP88-208ENST00000574087 CSMD2Q7Z408 3487 aa1.27□□□□□ -2.21
NUP88-208ENST00000574087 TNP1P09430 55 aa1.27□□□□□ -2.21
NUP88-208ENST00000574087 CREBBPQ92793 2442 aa1.26□□□□□ -2.21
NUP88-208ENST00000574087 SPTAN1Q13813 2472 aaKnown RBP1.26□□□□□ -2.21
NUP88-208ENST00000574087 MXRA5Q9NR99 2828 aa1.25□□□□□ -2.21
NUP88-208ENST00000574087 HUWE1Q7Z6Z7 4374 aaKnown RBP1.25□□□□□ -2.21
NUP88-208ENST00000574087 SMR3AQ99954 134 aa1.25□□□□□ -2.21
NUP88-208ENST00000574087 NBEAL2Q6ZNJ1 2754 aa1.25□□□□□ -2.21
NUP88-208ENST00000574087 COL7A1Q02388 2944 aa1.25□□□□□ -2.21
NUP88-208ENST00000574087 SACSQ9NZJ4 4579 aa1.25□□□□□ -2.21
NUP88-208ENST00000574087 ITPR3Q14573 2671 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 HECTD1Q9ULT8 2610 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 GPR98Q8WXG9 6306 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 KMT2AQ03164 3969 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 F8P00451 2351 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 MUC3AQ02505 3323 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 HECTD4Q9Y4D8 3996 aa1.24□□□□□ -2.21
NUP88-208ENST00000574087 KRTAP10-4P60372 401 aaPredicted RBP1.23□□□□□ -2.21
NUP88-208ENST00000574087 PTPN13Q12923 2485 aa1.23□□□□□ -2.21
NUP88-208ENST00000574087 PKD1L1Q8TDX9 2849 aa1.22□□□□□ -2.21
NUP88-208ENST00000574087 GCN1Q92616 2671 aaKnown RBP1.22□□□□□ -2.21
NUP88-208ENST00000574087 GVINP1Q7Z2Y8 2422 aa1.22□□□□□ -2.21
NUP88-208ENST00000574087 CENPEQ02224 2701 aa1.22□□□□□ -2.21
NUP88-208ENST00000574087 CCDC168Q8NDH2 2452 aa1.22□□□□□ -2.21
NUP88-208ENST00000574087 PKD1P98161 4303 aa1.21□□□□□ -2.21
NUP88-208ENST00000574087 ABCA12Q86UK0 2595 aa1.21□□□□□ -2.22
NUP88-208ENST00000574087 USP9XQ93008 2570 aaPredicted RBP1.21□□□□□ -2.22
NUP88-208ENST00000574087 TGP01266 2768 aa1.21□□□□□ -2.22
NUP88-208ENST00000574087 TLN1Q9Y490 2541 aaKnown RBP1.21□□□□□ -2.22
NUP88-208ENST00000574087 ZNF469Q96JG9 3925 aaPredicted RBP1.21□□□□□ -2.22
NUP88-208ENST00000574087 HIVEP3Q5T1R4 2406 aa1.2□□□□□ -2.22
NUP88-208ENST00000574087 TLN2Q9Y4G6 2542 aa1.2□□□□□ -2.22
NUP88-208ENST00000574087 APOBP04114 4563 aaKnown RBP1.19□□□□□ -2.22
NUP88-208ENST00000574087 ANKRD11Q6UB99 2663 aaPredicted RBP1.19□□□□□ -2.22
NUP88-208ENST00000574087 CEP295Q9C0D2 2601 aa1.19□□□□□ -2.22
NUP88-208ENST00000574087 USP24Q9UPU5 2620 aa1.19□□□□□ -2.22
NUP88-208ENST00000574087 FBN2P35556 2912 aa1.18□□□□□ -2.22
NUP88-208ENST00000574087 NAV2Q8IVL1 2488 aa1.18□□□□□ -2.22
NUP88-208ENST00000574087 NBEAL1Q6ZS30 2694 aa1.18□□□□□ -2.22
NUP88-208ENST00000574087 MYO9AB2RTY4 2548 aa1.18□□□□□ -2.22
NUP88-208ENST00000574087 FLGP20930 4061 aaPredicted RBP1.18□□□□□ -2.22
NUP88-208ENST00000574087 RIF1Q5UIP0 2472 aaKnown RBP1.17□□□□□ -2.22
NUP88-208ENST00000574087 HIVEP1P15822 2718 aa1.17□□□□□ -2.22
NUP88-208ENST00000574087 CFAP46Q8IYW2 2715 aa1.17□□□□□ -2.22
NUP88-208ENST00000574087 ZNF292O60281 2723 aa1.17□□□□□ -2.22
NUP88-208ENST00000574087 PIEZO1Q92508 2521 aa1.17□□□□□ -2.22
NUP88-208ENST00000574087 DNAH5Q8TE73 4624 aa1.17□□□□□ -2.22
NUP88-208ENST00000574087 VPS13BQ7Z7G8 4022 aa1.16□□□□□ -2.22
NUP88-208ENST00000574087 SONP18583 2426 aaKnown RBP1.16□□□□□ -2.22
NUP88-208ENST00000574087 DOPEY1Q5JWR5 2465 aa1.16□□□□□ -2.22
NUP88-208ENST00000574087 FAT2Q9NYQ8 4349 aa1.15□□□□□ -2.22
NUP88-208ENST00000574087 DYNC1H1Q14204 4646 aaKnown RBP1.15□□□□□ -2.22
NUP88-208ENST00000574087 PLECQ15149 4684 aaKnown RBP1.15□□□□□ -2.23
NUP88-208ENST00000574087 LRP1Q07954 4544 aaKnown RBP1.15□□□□□ -2.23
NUP88-208ENST00000574087 ZANQ9Y493 2812 aa1.15□□□□□ -2.23
NUP88-208ENST00000574087 PKHD1L1Q86WI1 4243 aa1.14□□□□□ -2.23
NUP88-208ENST00000574087 BDP1A6H8Y1 2624 aa1.14□□□□□ -2.23
NUP88-208ENST00000574087 HSPG2P98160 4391 aa1.14□□□□□ -2.23
NUP88-208ENST00000574087 MTORP42345 2549 aa1.14□□□□□ -2.23
NUP88-208ENST00000574087 ZFYVE26Q68DK2 2539 aa1.14□□□□□ -2.23
NUP88-208ENST00000574087 TTC28Q96AY4 2481 aa1.13□□□□□ -2.23
NUP88-208ENST00000574087 SETD2Q9BYW2 2564 aaPredicted RBP1.13□□□□□ -2.23
NUP88-208ENST00000574087 CHD8Q9HCK8 2581 aa1.13□□□□□ -2.23
NUP88-208ENST00000574087 POLQO75417 2590 aa1.12□□□□□ -2.23
NUP88-208ENST00000574087 FAT3Q8TDW7 4589 aa1.12□□□□□ -2.23
NUP88-208ENST00000574087 TNXBP22105 4242 aa1.12□□□□□ -2.23
NUP88-208ENST00000574087 PKHD1P08F94 4074 aa1.12□□□□□ -2.23
NUP88-208ENST00000574087 DMBT1Q9UGM3 2413 aaPredicted RBP1.11□□□□□ -2.23
NUP88-208ENST00000574087 USP9YO00507 2555 aaPredicted RBP1.11□□□□□ -2.23
NUP88-208ENST00000574087 ITPR2Q14571 2701 aa1.11□□□□□ -2.23
NUP88-208ENST00000574087 LRP1BQ9NZR2 4599 aa1.11□□□□□ -2.23
NUP88-208ENST00000574087 TEP1Q99973 2627 aaKnown RBP1.1□□□□□ -2.23
NUP88-208ENST00000574087 KRTAP8-1Q8IUC2 63 aa1.1□□□□□ -2.23
NUP88-208ENST00000574087 EPG5Q9HCE0 2579 aa1.1□□□□□ -2.23
NUP88-208ENST00000574087 LRRK2Q5S007 2527 aa1.09□□□□□ -2.23
NUP88-208ENST00000574087 STARD9Q9P2P6 4700 aa1.08□□□□□ -2.24
NUP88-208ENST00000574087 MAST4O15021 2626 aa1.08□□□□□ -2.24
NUP88-208ENST00000574087 ACANP16112 2415 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 FAT1Q14517 4588 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 M0R2T5 61 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 KRTAP2-3P0C7H8 128 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 KRTAP2-4Q9BYR9 128 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 KRTAP2-1Q9BYU5 128 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 ATRQ13535 2644 aa1.07□□□□□ -2.24
NUP88-208ENST00000574087 NSD1Q96L73 2696 aaPredicted RBP1.07□□□□□ -2.24
NUP88-208ENST00000574087 SMR3BP02814 79 aaPredicted RBP1.06□□□□□ -2.24
NUP88-208ENST00000574087 NOTCH1P46531 2555 aa1.06□□□□□ -2.24
NUP88-208ENST00000574087 STAB2Q8WWQ8 2551 aa1.06□□□□□ -2.24
NUP88-208ENST00000574087 ACACBO00763 2458 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms