RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 POLR2KP53803 58 aaKnown RBP0.1□□□□□ -2.39
VPS35-207ENST00000568191 KRTAP6-2Q3LI66 62 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 CLPSL2Q6UWE3 100 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 SVEP1Q4LDE5 3571 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 CELSR3Q9NYQ7 3312 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 CEP295Q9C0D2 2601 aa0.09□□□□□ -2.39
VPS35-207ENST00000568191 HSPG2P98160 4391 aa0.09□□□□□ -2.39
VPS35-207ENST00000568191 LAMA5O15230 3695 aa0.09□□□□□ -2.39
VPS35-207ENST00000568191 RPL39P62891 51 aaKnown RBP0.09□□□□□ -2.4
VPS35-207ENST00000568191 PKHD1P08F94 4074 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 LPAP08519 4548 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 HTTP42858 3142 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 CHD7Q9P2D1 2997 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 DNAH3Q8TD57 4116 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 FRYQ5TBA9 3013 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 MT1AP04731 61 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 SPRR2EP22531 72 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 SPRR2GQ9BYE4 73 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 MYCBP2O75592 4640 aa0.08□□□□□ -2.4
VPS35-207ENST00000568191 PKD1P98161 4303 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 AKAP9Q99996 3911 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 RPL39LQ96EH5 51 aaKnown RBP0.07□□□□□ -2.4
VPS35-207ENST00000568191 SPRR2FQ96RM1 72 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 TOMM7Q9P0U1 55 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 ADGRG4Q8IZF6 3080 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 LAMA3Q16787 3333 aa0.07□□□□□ -2.4
VPS35-207ENST00000568191 DNAH9Q9NYC9 4486 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 SPTBN5Q9NRC6 3674 aaKnown RBP0.06□□□□□ -2.4
VPS35-207ENST00000568191 SPART-AS1P0CW21 52 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 KRTAP19-5Q3LI72 72 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 KRTAP8-1Q8IUC2 63 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 MGAQ8IWI9 3026 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 SPENQ96T58 3664 aaKnown RBP0.06□□□□□ -2.4
VPS35-207ENST00000568191 HMCN2Q8NDA2 5059 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 NBPF19A0A087WUL8 3843 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 ITPR2Q14571 2701 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 RELNP78509 3460 aa0.06□□□□□ -2.4
VPS35-207ENST00000568191 DEFB1P60022 68 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 LEAP2Q969E1 77 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 ZFHX4Q86UP3 3567 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 CENPEQ02224 2701 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 ANK3Q12955 4377 aaKnown RBP0.05□□□□□ -2.4
VPS35-207ENST00000568191 LRP2P98164 4655 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 DMXL2Q8TDJ6 3036 aa0.05□□□□□ -2.4
VPS35-207ENST00000568191 HTN1P15515 57 aa0.04□□□□□ -2.4
VPS35-207ENST00000568191 KRTAP19-7Q3SYF9 63 aa0.04□□□□□ -2.4
VPS35-207ENST00000568191 TTTY10Q9BZA0 68 aa0.04□□□□□ -2.4
VPS35-207ENST00000568191 CSMD1Q96PZ7 3565 aa0.04□□□□□ -2.4
VPS35-207ENST00000568191 SSPOA2VEC9 5147 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 NIPBLQ6KC79 2804 aaeCLIP0.03□□□□□ -2.4
VPS35-207ENST00000568191 SMR3BP02814 79 aaPredicted RBP0.03□□□□□ -2.4
VPS35-207ENST00000568191 KRTAP19-8Q3LI54 63 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 KRTAP6-1Q3LI64 71 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 DEFB104AQ8WTQ1 72 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 RHPN1-AS1Q9BWJ2 59 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 DNAH7Q8WXX0 4024 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 DNAH11Q96DT5 4516 aa0.03□□□□□ -2.4
VPS35-207ENST00000568191 PKHD1L1Q86WI1 4243 aa0.03□□□□□ -2.41
VPS35-207ENST00000568191 LRP1BQ9NZR2 4599 aa0.03□□□□□ -2.41
VPS35-207ENST00000568191 A0A096LNI7 61 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 H3BSH0 61 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 DEFB133Q30KQ1 61 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 LINC01590Q5TEZ4 76 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 ARHGAP5-AS1Q96IT6 56 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 DNAH6Q9C0G6 4158 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 DYNC2H1Q8NCM8 4307 aaKnown RBP0.02□□□□□ -2.41
VPS35-207ENST00000568191 CMYA5Q8N3K9 4069 aa0.02□□□□□ -2.41
VPS35-207ENST00000568191 CFAP54Q96N23 3096 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 SRCAPQ6ZRS2 3230 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 SACSQ9NZJ4 4579 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 DEFB4AO15263 64 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 DEFB136Q30KP8 78 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 VPS13DQ5THJ4 4388 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 CSMD2Q7Z408 3487 aa0.01□□□□□ -2.41
VPS35-207ENST00000568191 ATMQ13315 3056 aa0□□□□□ -2.41
VPS35-207ENST00000568191 PRCDQ00LT1 54 aa0□□□□□ -2.41
VPS35-207ENST00000568191 DNAH2Q9P225 4427 aa-0□□□□□ -2.41
VPS35-207ENST00000568191 MACF1Q9UPN3 7388 aaKnown RBP-0□□□□□ -2.41
VPS35-207ENST00000568191 TRIOO75962 3097 aa-0□□□□□ -2.41
VPS35-207ENST00000568191 TRRAPQ9Y4A5 3859 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 SMG1Q96Q15 3661 aaKnown RBP-0.01□□□□□ -2.41
VPS35-207ENST00000568191 PRUNE2Q8WUY3 3088 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 APELAP0DMC3 54 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 MT1HP80294 61 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 KRTAP20-2Q3LI61 65 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 DNAH1Q9P2D7 4330 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 LAMA2P24043 3122 aaKnown RBP-0.01□□□□□ -2.41
VPS35-207ENST00000568191 FRYLO94915 3013 aa-0.01□□□□□ -2.41
VPS35-207ENST00000568191 FAT3Q8TDW7 4589 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 H3BUX3 64 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 CD52P31358 61 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 RPS29P62273 56 aaKnown RBP-0.02□□□□□ -2.41
VPS35-207ENST00000568191 RPL39P5Q59GN2 51 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 LINC01556Q5JQF7 62 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 DEFB124Q8NES8 71 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 TMEM167AQ8TBQ9 72 aa-0.02□□□□□ -2.41
VPS35-207ENST00000568191 APOBP04114 4563 aaKnown RBP-0.02□□□□□ -2.41
VPS35-207ENST00000568191 PCLOQ9Y6V0 5065 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 DNAH8Q96JB1 4490 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 A0A096LPF7 62 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms