RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 SACSQ9NZJ4 4579 aa0.67□□□□□ -2.3
RTF1-207ENST00000561076 KRTAP10-4P60372 401 aaPredicted RBP0.67□□□□□ -2.3
RTF1-207ENST00000561076 KLK9Q2XQG4 91 aa0.67□□□□□ -2.3
RTF1-207ENST00000561076 ABRACLQ9P1F3 81 aa0.67□□□□□ -2.3
RTF1-207ENST00000561076 DNAH1Q9P2D7 4330 aa0.67□□□□□ -2.3
RTF1-207ENST00000561076 DYNC2H1Q8NCM8 4307 aaKnown RBP0.66□□□□□ -2.3
RTF1-207ENST00000561076 SPINK1P00995 79 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 DEFB104AQ8WTQ1 72 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 KAAG1Q9UBP8 84 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 NEBP20929 6669 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 LYSTQ99698 3801 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 RNF213Q63HN8 5207 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 STARD9Q9P2P6 4700 aa0.66□□□□□ -2.3
RTF1-207ENST00000561076 SYNE2Q8WXH0 6885 aaKnown RBP0.65□□□□□ -2.3
RTF1-207ENST00000561076 SRRM2Q9UQ35 2752 aaKnown RBP0.65□□□□□ -2.3
RTF1-207ENST00000561076 HECTD4Q9Y4D8 3996 aa0.65□□□□□ -2.31
RTF1-207ENST00000561076 IGIPA6NJ69 53 aa0.65□□□□□ -2.31
RTF1-207ENST00000561076 IAPPP10997 89 aa0.65□□□□□ -2.31
RTF1-207ENST00000561076 PRB3Q04118 309 aaPredicted RBP0.65□□□□□ -2.31
RTF1-207ENST00000561076 DEFB136Q30KP8 78 aa0.65□□□□□ -2.31
RTF1-207ENST00000561076 C6orf48Q9UBA6 75 aa0.65□□□□□ -2.31
RTF1-207ENST00000561076 DNAH9Q9NYC9 4486 aa0.64□□□□□ -2.31
RTF1-207ENST00000561076 PLECQ15149 4684 aaKnown RBP0.64□□□□□ -2.31
RTF1-207ENST00000561076 SMR3BP02814 79 aaPredicted RBP0.64□□□□□ -2.31
RTF1-207ENST00000561076 DNAH7Q8WXX0 4024 aa0.64□□□□□ -2.31
RTF1-207ENST00000561076 MACF1Q9UPN3 7388 aaKnown RBP0.63□□□□□ -2.31
RTF1-207ENST00000561076 DNAH3Q8TD57 4116 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 HMCN2Q8NDA2 5059 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 H3BUA1 57 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 DEFB135Q30KP9 77 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 KRTAP5-11Q6L8G4 156 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 LINC00308Q8TCZ7 52 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 SSPOA2VEC9 5147 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 FAT3Q8TDW7 4589 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 ALMS1Q8TCU4 4167 aa0.63□□□□□ -2.31
RTF1-207ENST00000561076 FRAS1Q86XX4 4008 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 CSMD3Q7Z407 3707 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 HMCN1Q96RW7 5635 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 SMIM27A0A1W2PRY6 76 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 DEFB4AO15263 64 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 SPART-AS1P0CW21 52 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 LELP1Q5T871 98 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 KMT2AQ03164 3969 aa0.62□□□□□ -2.31
RTF1-207ENST00000561076 HUWE1Q7Z6Z7 4374 aaKnown RBP0.61□□□□□ -2.31
RTF1-207ENST00000561076 H0YAA0 97 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 DEFB130BP0DP73 79 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 DEFB130AP0DP74 79 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 HTN3P15516 51 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 RPS27LQ71UM5 84 aaKnown RBP0.61□□□□□ -2.31
RTF1-207ENST00000561076 DNAH11Q96DT5 4516 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 DNAH10Q8IVF4 4471 aa0.61□□□□□ -2.31
RTF1-207ENST00000561076 DYNC1H1Q14204 4646 aaKnown RBP0.61□□□□□ -2.31
RTF1-207ENST00000561076 PKHD1P08F94 4074 aa0.6□□□□□ -2.31
RTF1-207ENST00000561076 DNAH5Q8TE73 4624 aa0.6□□□□□ -2.31
RTF1-207ENST00000561076 HSPG2P98160 4391 aa0.6□□□□□ -2.31
RTF1-207ENST00000561076 LEAP2Q969E1 77 aa0.6□□□□□ -2.31
RTF1-207ENST00000561076 MYCBP2O75592 4640 aa0.6□□□□□ -2.31
RTF1-207ENST00000561076 APOBP04114 4563 aaKnown RBP0.59□□□□□ -2.31
RTF1-207ENST00000561076 KRTAP2-3P0C7H8 128 aa0.59□□□□□ -2.31
RTF1-207ENST00000561076 DEFB131AP59861 70 aa0.59□□□□□ -2.31
RTF1-207ENST00000561076 KRTAP2-4Q9BYR9 128 aa0.59□□□□□ -2.31
RTF1-207ENST00000561076 LRP1BQ9NZR2 4599 aa0.59□□□□□ -2.32
RTF1-207ENST00000561076 LRP2P98164 4655 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 VPS13BQ7Z7G8 4022 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 PRLHP81277 87 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 WT1-ASQ06250 92 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 SMIM2Q9BVW6 85 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 RHPN1-AS1Q9BWJ2 59 aa0.58□□□□□ -2.32
RTF1-207ENST00000561076 FAT2Q9NYQ8 4349 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 DNAH6Q9C0G6 4158 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 VPS13DQ5THJ4 4388 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 DNAH2Q9P225 4427 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 DNAH17Q9UFH2 4485 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 FAT1Q14517 4588 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 LINC01546A6NGU7 62 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 H3BNG1 76 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 MT1HL1P0DM35 61 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 APELAP0DMC3 54 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 RPS27P42677 84 aaKnown RBP0.57□□□□□ -2.32
RTF1-207ENST00000561076 SNRPGP62308 76 aaKnown RBP0.57□□□□□ -2.32
RTF1-207ENST00000561076 LCE1CQ5T751 118 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 LCE1BQ5T7P3 118 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 KRTAP5-5Q701N2 237 aaPredicted RBP0.57□□□□□ -2.32
RTF1-207ENST00000561076 WFDC10BQ8IUB3 73 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 NOP10Q9NPE3 64 aaKnown RBP0.57□□□□□ -2.32
RTF1-207ENST00000561076 AHNAK2Q8IVF2 5795 aa0.57□□□□□ -2.32
RTF1-207ENST00000561076 AHNAKQ09666 5890 aaKnown RBP0.56□□□□□ -2.32
RTF1-207ENST00000561076 M0R2T5 61 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 HTN1P15515 57 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 PRCDQ00LT1 54 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 RPL39P5Q59GN2 51 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 TMEM167AQ8TBQ9 72 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 PKD1P98161 4303 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 KMT2DO14686 5537 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 PKHD1L1Q86WI1 4243 aa0.56□□□□□ -2.32
RTF1-207ENST00000561076 A0A096LPF7 62 aa0.55□□□□□ -2.32
RTF1-207ENST00000561076 KRTAP4-4Q9BYR3 166 aa0.55□□□□□ -2.32
RTF1-207ENST00000561076 KRTAP2-1Q9BYU5 128 aa0.55□□□□□ -2.32
RTF1-207ENST00000561076 LINC01556Q5JQF7 62 aa0.54□□□□□ -2.32
RTF1-207ENST00000561076 LINC01590Q5TEZ4 76 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms