RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 GNG13Q9P2W3 67 aa1.21□□□□□ -2.22
LRRC28-212ENST00000558911 NDUFB1O75438 58 aa1.2□□□□□ -2.22
LRRC28-212ENST00000558911 NREPQ16612 68 aa1.2□□□□□ -2.22
LRRC28-212ENST00000558911 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
LRRC28-212ENST00000558911 SMR3BP02814 79 aaPredicted RBP1.19□□□□□ -2.22
LRRC28-212ENST00000558911 SFTA3P0C7M3 94 aa1.19□□□□□ -2.22
LRRC28-212ENST00000558911 HMGA1P17096 107 aaKnown RBP1.18□□□□□ -2.22
LRRC28-212ENST00000558911 FXYD6-FXYD2A0A087WZ82 144 aa1.17□□□□□ -2.22
LRRC28-212ENST00000558911 C3orf79P0CE67 100 aa1.17□□□□□ -2.22
LRRC28-212ENST00000558911 COX7BP24311 80 aa1.17□□□□□ -2.22
LRRC28-212ENST00000558911 ATXN8Q156A1 80 aa1.17□□□□□ -2.22
LRRC28-212ENST00000558911 SPINK9Q5DT21 86 aa1.17□□□□□ -2.22
LRRC28-212ENST00000558911 C10orf95Q9H7T3 257 aa1.15□□□□□ -2.23
LRRC28-212ENST00000558911 TP53AIP1Q9HCN2 124 aa1.15□□□□□ -2.23
LRRC28-212ENST00000558911 A0A0D9SFI3 127 aa1.14□□□□□ -2.23
LRRC28-212ENST00000558911 I3L2K1 104 aa1.14□□□□□ -2.23
LRRC28-212ENST00000558911 KRTAP10-4P60372 401 aaPredicted RBP1.13□□□□□ -2.23
LRRC28-212ENST00000558911 A0A0D9SG42 100 aa1.12□□□□□ -2.23
LRRC28-212ENST00000558911 SPTY2D1-AS1A0A0U1RR47 76 aa1.12□□□□□ -2.23
LRRC28-212ENST00000558911 CRIPTQ9P021 101 aa1.12□□□□□ -2.23
LRRC28-212ENST00000558911 PRO0255Q9UI72 69 aa1.12□□□□□ -2.23
LRRC28-212ENST00000558911 NDUFA4O00483 81 aa1.11□□□□□ -2.23
LRRC28-212ENST00000558911 RPL38P63173 70 aaKnown RBP1.11□□□□□ -2.23
LRRC28-212ENST00000558911 PIGYQ3MUY2 71 aa1.11□□□□□ -2.23
LRRC28-212ENST00000558911 FAM103A1Q9BTL3 118 aaKnown RBP1.11□□□□□ -2.23
LRRC28-212ENST00000558911 CNFNQ9BYD5 112 aa1.11□□□□□ -2.23
LRRC28-212ENST00000558911 ARL14EPLP0DKL9 152 aa1.1□□□□□ -2.23
LRRC28-212ENST00000558911 ENHOQ6UWT2 76 aa1.1□□□□□ -2.23
LRRC28-212ENST00000558911 ANKRD36CQ5JPF3 1778 aa1.1□□□□□ -2.23
LRRC28-212ENST00000558911 LINC01549A6NIU2 74 aa1.09□□□□□ -2.23
LRRC28-212ENST00000558911 CPSF4LA6NMK7 179 aaKnown RBP1.09□□□□□ -2.23
LRRC28-212ENST00000558911 K7EQZ3 153 aa1.09□□□□□ -2.23
LRRC28-212ENST00000558911 COX6A2Q02221 97 aa1.09□□□□□ -2.23
LRRC28-212ENST00000558911 FLGP20930 4061 aaPredicted RBP1.09□□□□□ -2.24
LRRC28-212ENST00000558911 USMG5Q96IX5 58 aa1.07□□□□□ -2.24
LRRC28-212ENST00000558911 SYNE1Q8NF91 8797 aaKnown RBP1.07□□□□□ -2.24
LRRC28-212ENST00000558911 I3L3M4 83 aa1.06□□□□□ -2.24
LRRC28-212ENST00000558911 Q8IZM0 81 aa1.06□□□□□ -2.24
LRRC28-212ENST00000558911 UBL5Q9BZL1 73 aa1.05□□□□□ -2.24
LRRC28-212ENST00000558911 MRPL34Q9BQ48 92 aaKnown RBP1.04□□□□□ -2.24
LRRC28-212ENST00000558911 FCER1GP30273 86 aa1.01□□□□□ -2.25
LRRC28-212ENST00000558911 PRB3Q04118 309 aaPredicted RBP1.01□□□□□ -2.25
LRRC28-212ENST00000558911 SPRR2FQ96RM1 72 aa1□□□□□ -2.25
LRRC28-212ENST00000558911 KCNQ1DNQ9H478 68 aa1□□□□□ -2.25
LRRC28-212ENST00000558911 CCL22O00626 93 aa0.99□□□□□ -2.25
LRRC28-212ENST00000558911 K7EMI3 77 aa0.98□□□□□ -2.25
LRRC28-212ENST00000558911 SPRR1AP35321 89 aa0.98□□□□□ -2.25
LRRC28-212ENST00000558911 DEFB109BQ30KR1 87 aa0.98□□□□□ -2.25
LRRC28-212ENST00000558911 FXYD6Q9H0Q3 95 aa0.98□□□□□ -2.25
LRRC28-212ENST00000558911 ETDCA0A1B0GVM5 59 aa0.97□□□□□ -2.25
LRRC28-212ENST00000558911 NDUFA3O95167 84 aa0.97□□□□□ -2.25
LRRC28-212ENST00000558911 APLNQ9ULZ1 77 aa0.97□□□□□ -2.25
LRRC28-212ENST00000558911 SPRR1BP22528 89 aa0.96□□□□□ -2.26
LRRC28-212ENST00000558911 DEFB105AQ8NG35 78 aa0.96□□□□□ -2.26
LRRC28-212ENST00000558911 DEFB131BA0A096LNP1 70 aa0.95□□□□□ -2.26
LRRC28-212ENST00000558911 MRPL33O75394 65 aaKnown RBP0.95□□□□□ -2.26
LRRC28-212ENST00000558911 DEFB114Q30KQ6 69 aa0.95□□□□□ -2.26
LRRC28-212ENST00000558911 H1FX-AS1Q4G0G2 97 aa0.95□□□□□ -2.26
LRRC28-212ENST00000558911 M0R1W7 72 aa0.94□□□□□ -2.26
LRRC28-212ENST00000558911 MT1HL1P0DM35 61 aa0.94□□□□□ -2.26
LRRC28-212ENST00000558911 DEFB104AQ8WTQ1 72 aa0.94□□□□□ -2.26
LRRC28-212ENST00000558911 MT1HP80294 61 aa0.93□□□□□ -2.26
LRRC28-212ENST00000558911 KLK9Q2XQG4 91 aa0.93□□□□□ -2.26
LRRC28-212ENST00000558911 COX6B2Q6YFQ2 88 aa0.93□□□□□ -2.26
LRRC28-212ENST00000558911 CRIP1P50238 77 aa0.92□□□□□ -2.26
LRRC28-212ENST00000558911 NCBP2-AS2Q69YL0 99 aa0.92□□□□□ -2.26
LRRC28-212ENST00000558911 NMES1Q9C002 83 aa0.92□□□□□ -2.26
LRRC28-212ENST00000558911 CDKN2A-AS1Q9UH64 79 aa0.92□□□□□ -2.26
LRRC28-212ENST00000558911 LYNX1G3V0Z9 82 aa0.91□□□□□ -2.26
LRRC28-212ENST00000558911 WFDC13Q8IUB5 93 aa0.91□□□□□ -2.26
LRRC28-212ENST00000558911 SNRPGP15A8MWD9 76 aa0.9□□□□□ -2.27
LRRC28-212ENST00000558911 H0YAA0 97 aa0.9□□□□□ -2.27
LRRC28-212ENST00000558911 LINC00158P58513 81 aa0.9□□□□□ -2.27
LRRC28-212ENST00000558911 SERF2P84101 59 aa0.89□□□□□ -2.27
LRRC28-212ENST00000558911 IGIPA6NJ69 53 aa0.87□□□□□ -2.27
LRRC28-212ENST00000558911 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
LRRC28-212ENST00000558911 STATHP02808 62 aa0.85□□□□□ -2.27
LRRC28-212ENST00000558911 TFF3Q07654 80 aa0.85□□□□□ -2.27
LRRC28-212ENST00000558911 SPINK4O60575 86 aa0.84□□□□□ -2.27
LRRC28-212ENST00000558911 PLNP26678 52 aa0.84□□□□□ -2.27
LRRC28-212ENST00000558911 PRH1P02810 166 aa0.83□□□□□ -2.28
LRRC28-212ENST00000558911 IAPPP10997 89 aa0.83□□□□□ -2.28
LRRC28-212ENST00000558911 CMC2Q9NRP2 79 aa0.83□□□□□ -2.28
LRRC28-212ENST00000558911 MINOS1Q5TGZ0 78 aa0.82□□□□□ -2.28
LRRC28-212ENST00000558911 KRTAP20-2Q3LI61 65 aa0.81□□□□□ -2.28
LRRC28-212ENST00000558911 SPINK6Q6UWN8 80 aa0.81□□□□□ -2.28
LRRC28-212ENST00000558911 KRTAP19-3Q7Z4W3 81 aa0.8□□□□□ -2.28
LRRC28-212ENST00000558911 M0R2T5 61 aa0.79□□□□□ -2.28
LRRC28-212ENST00000558911 DEFB130BP0DP73 79 aa0.79□□□□□ -2.28
LRRC28-212ENST00000558911 DEFB130AP0DP74 79 aa0.79□□□□□ -2.28
LRRC28-212ENST00000558911 C6orf48Q9UBA6 75 aa0.78□□□□□ -2.28
LRRC28-212ENST00000558911 H0YGX0 51 aa0.77□□□□□ -2.29
LRRC28-212ENST00000558911 TOMM5Q8N4H5 51 aa0.77□□□□□ -2.29
LRRC28-212ENST00000558911 TMEM167BQ9NRX6 74 aa0.77□□□□□ -2.29
LRRC28-212ENST00000558911 TIMM8BQ9Y5J9 83 aaPredicted RBP0.77□□□□□ -2.29
LRRC28-212ENST00000558911 LINC00308Q8TCZ7 52 aa0.76□□□□□ -2.29
LRRC28-212ENST00000558911 RPS27P42677 84 aaKnown RBP0.75□□□□□ -2.29
LRRC28-212ENST00000558911 RPS27LQ71UM5 84 aaKnown RBP0.75□□□□□ -2.29
LRRC28-212ENST00000558911 ABRACLQ9P1F3 81 aa0.75□□□□□ -2.29
LRRC28-212ENST00000558911 SMIM27A0A1W2PRY6 76 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms