RNA–Protein interactions for RNA: ENST00000555462.5

PPP4R3A-208, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best) BASIC

Gene PPP4R3A, Length 3,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-208ENST00000555462 C10orf95Q9H7T3 257 aa8.89□□□□□ -0.99
PPP4R3A-208ENST00000555462 KRTAP10-8P60410 259 aa8.88□□□□□ -0.99
PPP4R3A-208ENST00000555462 K7ERS5 55 aa8.88□□□□□ -0.99
PPP4R3A-208ENST00000555462 P0C880 135 aa8.8□□□□□ -1
PPP4R3A-208ENST00000555462 KRTAP10-4P60372 401 aaPredicted RBP8.8□□□□□ -1
PPP4R3A-208ENST00000555462 ROMO1P60602 79 aa8.79□□□□□ -1
PPP4R3A-208ENST00000555462 RPS29P62273 56 aaKnown RBP8.76□□□□□ -1.01
PPP4R3A-208ENST00000555462 LRP2P98164 4655 aa8.76□□□□□ -1.01
PPP4R3A-208ENST00000555462 KRTAP10-6P60371 365 aaPredicted RBP8.75□□□□□ -1.01
PPP4R3A-208ENST00000555462 SPINT4Q6UDR6 99 aa8.75□□□□□ -1.01
PPP4R3A-208ENST00000555462 KRTAP3-3Q9BYR6 98 aa8.75□□□□□ -1.01
PPP4R3A-208ENST00000555462 RPL37P61927 97 aaKnown RBP8.72□□□□□ -1.01
PPP4R3A-208ENST00000555462 KIAA1109Q2LD37 5005 aa8.72□□□□□ -1.01
PPP4R3A-208ENST00000555462 RYR2Q92736 4967 aa8.69□□□□□ -1.02
PPP4R3A-208ENST00000555462 TPRXLQ17RH7 258 aa8.68□□□□□ -1.02
PPP4R3A-208ENST00000555462 A0A1B0GVY2 172 aa8.68□□□□□ -1.02
PPP4R3A-208ENST00000555462 S4R3F8 94 aa8.68□□□□□ -1.02
PPP4R3A-208ENST00000555462 TNXBP22105 4242 aa8.67□□□□□ -1.02
PPP4R3A-208ENST00000555462 RYR1P21817 5038 aa8.66□□□□□ -1.02
PPP4R3A-208ENST00000555462 KRTAP3-2Q9BYR7 98 aa8.65□□□□□ -1.02
PPP4R3A-208ENST00000555462 XP32Q5T750 250 aa8.63□□□□□ -1.03
PPP4R3A-208ENST00000555462 Q5VSD8 79 aa8.63□□□□□ -1.03
PPP4R3A-208ENST00000555462 KRTAP12-2P59991 146 aa8.61□□□□□ -1.03
PPP4R3A-208ENST00000555462 RYR3Q15413 4870 aa8.6□□□□□ -1.03
PPP4R3A-208ENST00000555462 KRTAP17-1Q9BYP8 105 aa8.59□□□□□ -1.03
PPP4R3A-208ENST00000555462 ABCA13Q86UQ4 5058 aa8.5□□□□□ -1.05
PPP4R3A-208ENST00000555462 NDUFAF8A1L188 74 aa8.44□□□□□ -1.06
PPP4R3A-208ENST00000555462 KRTAP12-1P59990 96 aa8.39□□□□□ -1.07
PPP4R3A-208ENST00000555462 MUC2Q02817 5179 aa8.38□□□□□ -1.07
PPP4R3A-208ENST00000555462 EPPK1P58107 5090 aaKnown RBP8.34□□□□□ -1.08
PPP4R3A-208ENST00000555462 M0QZ58 72 aa8.31□□□□□ -1.08
PPP4R3A-208ENST00000555462 MT1HL1P0DM35 61 aa8.27□□□□□ -1.09
PPP4R3A-208ENST00000555462 R4GN34 69 aa8.22□□□□□ -1.09
PPP4R3A-208ENST00000555462 LORP23490 312 aaPredicted RBP8.22□□□□□ -1.09
PPP4R3A-208ENST00000555462 KRTAP4-5Q9BYR2 181 aa8.17□□□□□ -1.1
PPP4R3A-208ENST00000555462 KRTAP15-1Q3LI76 137 aa8.16□□□□□ -1.1
PPP4R3A-208ENST00000555462 KRTAP21-3Q3LHN1 58 aa8.07□□□□□ -1.12
PPP4R3A-208ENST00000555462 KRTAP4-1Q9BYQ7 146 aa7.98□□□□□ -1.13
PPP4R3A-208ENST00000555462 CAMK2N1Q7Z7J9 78 aa7.92□□□□□ -1.14
PPP4R3A-208ENST00000555462 FAT4Q6V0I7 4981 aa7.91□□□□□ -1.14
PPP4R3A-208ENST00000555462 HERC2O95714 4834 aa7.88□□□□□ -1.15
PPP4R3A-208ENST00000555462 MUC17Q685J3 4493 aa7.87□□□□□ -1.15
PPP4R3A-208ENST00000555462 PLAC4Q8WY50 150 aa7.86□□□□□ -1.15
PPP4R3A-208ENST00000555462 J3QL48 77 aa7.84□□□□□ -1.16
PPP4R3A-208ENST00000555462 HERC1Q15751 4861 aa7.77□□□□□ -1.16
PPP4R3A-208ENST00000555462 SEC61BP60468 96 aaKnown RBP7.76□□□□□ -1.17
PPP4R3A-208ENST00000555462 PCLOQ9Y6V0 5065 aa7.76□□□□□ -1.17
PPP4R3A-208ENST00000555462 RNF213Q63HN8 5207 aa7.72□□□□□ -1.17
PPP4R3A-208ENST00000555462 LUZP6Q538Z0 58 aa7.57□□□□□ -1.2
PPP4R3A-208ENST00000555462 FLGP20930 4061 aaPredicted RBP7.5□□□□□ -1.21
PPP4R3A-208ENST00000555462 KRTAP19-2Q3LHN2 52 aa7.5□□□□□ -1.21
PPP4R3A-208ENST00000555462 A0A0A0MQY5 61 aa7.46□□□□□ -1.22
PPP4R3A-208ENST00000555462 HMCN2Q8NDA2 5059 aa7.45□□□□□ -1.22
PPP4R3A-208ENST00000555462 M0R2T5 61 aa7.41□□□□□ -1.22
PPP4R3A-208ENST00000555462 UBR4Q5T4S7 5183 aa7.41□□□□□ -1.22
PPP4R3A-208ENST00000555462 TNP1P09430 55 aa7.4□□□□□ -1.22
PPP4R3A-208ENST00000555462 PP632Q6XCG6 107 aa7.32□□□□□ -1.24
PPP4R3A-208ENST00000555462 BIRC6Q9NR09 4857 aa7.29□□□□□ -1.24
PPP4R3A-208ENST00000555462 LCE3AQ5TA76 89 aa7.14□□□□□ -1.27
PPP4R3A-208ENST00000555462 KRTAP10-10P60014 251 aa7.13□□□□□ -1.27
PPP4R3A-208ENST00000555462 KRTAP19-1Q8IUB9 90 aa7.09□□□□□ -1.27
PPP4R3A-208ENST00000555462 LCE2CQ5TA81 110 aa7.07□□□□□ -1.28
PPP4R3A-208ENST00000555462 USH2AO75445 5202 aa7.06□□□□□ -1.28
PPP4R3A-208ENST00000555462 KMT2DO14686 5537 aa7.03□□□□□ -1.28
PPP4R3A-208ENST00000555462 MT1FP04733 61 aa6.98□□□□□ -1.29
PPP4R3A-208ENST00000555462 MT1HP80294 61 aa6.93□□□□□ -1.3
PPP4R3A-208ENST00000555462 SPRR2GQ9BYE4 73 aa6.92□□□□□ -1.3
PPP4R3A-208ENST00000555462 MT2AP02795 61 aa6.89□□□□□ -1.31
PPP4R3A-208ENST00000555462 SPRR5A0A1B0GTR4 108 aa6.87□□□□□ -1.31
PPP4R3A-208ENST00000555462 KRTAP9-8Q9BYQ0 159 aa6.76□□□□□ -1.33
PPP4R3A-208ENST00000555462 KRTAP23-1A1A580 65 aa6.74□□□□□ -1.33
PPP4R3A-208ENST00000555462 KRTAP10-7P60409 375 aaPredicted RBP6.72□□□□□ -1.33
PPP4R3A-208ENST00000555462 FSIP2Q5CZC0 6907 aa6.71□□□□□ -1.34
PPP4R3A-208ENST00000555462 KRTAP10-5P60370 271 aa6.7□□□□□ -1.34
PPP4R3A-208ENST00000555462 MT1XP80297 61 aa6.7□□□□□ -1.34
PPP4R3A-208ENST00000555462 KRTAP12-3P60328 96 aa6.69□□□□□ -1.34
PPP4R3A-208ENST00000555462 MT1BP07438 61 aa6.68□□□□□ -1.34
PPP4R3A-208ENST00000555462 KRTAP10-12P60413 245 aa6.67□□□□□ -1.34
PPP4R3A-208ENST00000555462 KRTAP8-1Q8IUC2 63 aa6.6□□□□□ -1.35
PPP4R3A-208ENST00000555462 KRTAP19-8Q3LI54 63 aa6.5□□□□□ -1.37
PPP4R3A-208ENST00000555462 KRTAP4-8A0A0G2JLE6 195 aa6.46□□□□□ -1.38
PPP4R3A-208ENST00000555462 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.38
PPP4R3A-208ENST00000555462 KRTAP19-5Q3LI72 72 aa6.43□□□□□ -1.38
PPP4R3A-208ENST00000555462 KRTAP9-3Q9BYQ3 159 aa6.42□□□□□ -1.38
PPP4R3A-208ENST00000555462 KRTAP4-7Q9BYR0 210 aa6.36□□□□□ -1.39
PPP4R3A-208ENST00000555462 PRO2289Q9P1D8 64 aa6.36□□□□□ -1.39
PPP4R3A-208ENST00000555462 LCE2BO14633 110 aa6.31□□□□□ -1.4
PPP4R3A-208ENST00000555462 DSTQ03001 7570 aaKnown RBP6.29□□□□□ -1.4
PPP4R3A-208ENST00000555462 KRTAP9-6A8MVA2 160 aa6.22□□□□□ -1.41
PPP4R3A-208ENST00000555462 LCE3CQ5T5A8 94 aa6.22□□□□□ -1.41
PPP4R3A-208ENST00000555462 INE1O15225 51 aa6.18□□□□□ -1.42
PPP4R3A-208ENST00000555462 FCGBPQ9Y6R7 5405 aaPredicted RBP6.11□□□□□ -1.43
PPP4R3A-208ENST00000555462 MUC12Q9UKN1 5478 aa6.1□□□□□ -1.43
PPP4R3A-208ENST00000555462 OBSCNQ5VST9 7968 aa6.03□□□□□ -1.44
PPP4R3A-208ENST00000555462 SYNE1Q8NF91 8797 aaKnown RBP6.01□□□□□ -1.45
PPP4R3A-208ENST00000555462 CRCT1Q9UGL9 99 aa5.99□□□□□ -1.45
PPP4R3A-208ENST00000555462 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
PPP4R3A-208ENST00000555462 KRTAP19-7Q3SYF9 63 aa5.95□□□□□ -1.46
PPP4R3A-208ENST00000555462 LOC100996750A0A140TA64 210 aa5.91□□□□□ -1.46
PPP4R3A-208ENST00000555462 KRTAP4-3Q9BYR4 195 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms