RNA–Protein interactions for RNA: ENST00000541615.5

SNHG1-218, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5 BASIC

Gene SNHG1, Length 748 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-218ENST00000541615 ANK3Q12955 4377 aaKnown RBP2.59□□□□□ -1.99
SNHG1-218ENST00000541615 KRTAP12-1P59990 96 aa2.59□□□□□ -1.99
SNHG1-218ENST00000541615 RPS29P62273 56 aaKnown RBP2.59□□□□□ -1.99
SNHG1-218ENST00000541615 KRTAP13-4Q3LI77 160 aa2.57□□□□□ -2
SNHG1-218ENST00000541615 KRTAP5-11Q6L8G4 156 aa2.57□□□□□ -2
SNHG1-218ENST00000541615 ANK2Q01484 3957 aa2.55□□□□□ -2
SNHG1-218ENST00000541615 SPRR5A0A1B0GTR4 108 aa2.55□□□□□ -2
SNHG1-218ENST00000541615 MEGF8Q7Z7M0 2845 aa2.54□□□□□ -2
SNHG1-218ENST00000541615 SVEP1Q4LDE5 3571 aa2.53□□□□□ -2
SNHG1-218ENST00000541615 MAPK1IP1LQ8NDC0 245 aa2.53□□□□□ -2
SNHG1-218ENST00000541615 KRTAP2-2Q9BYT5 123 aa2.53□□□□□ -2
SNHG1-218ENST00000541615 MGAM2Q2M2H8 2515 aa2.53□□□□□ -2
SNHG1-218ENST00000541615 TENM1Q9UKZ4 2725 aa2.52□□□□□ -2.01
SNHG1-218ENST00000541615 Q5VSD8 79 aa2.51□□□□□ -2.01
SNHG1-218ENST00000541615 NBEAL2Q6ZNJ1 2754 aa2.51□□□□□ -2.01
SNHG1-218ENST00000541615 VWFP04275 2813 aa2.5□□□□□ -2.01
SNHG1-218ENST00000541615 TRRAPQ9Y4A5 3859 aa2.48□□□□□ -2.01
SNHG1-218ENST00000541615 KRTAP10-8P60410 259 aa2.47□□□□□ -2.01
SNHG1-218ENST00000541615 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
SNHG1-218ENST00000541615 SRRM2Q9UQ35 2752 aaKnown RBP2.47□□□□□ -2.01
SNHG1-218ENST00000541615 CMYA5Q8N3K9 4069 aa2.45□□□□□ -2.02
SNHG1-218ENST00000541615 KRTAP10-3P60369 221 aa2.44□□□□□ -2.02
SNHG1-218ENST00000541615 KRTAP13-2Q52LG2 175 aa2.44□□□□□ -2.02
SNHG1-218ENST00000541615 DNAH1Q9P2D7 4330 aa2.44□□□□□ -2.02
SNHG1-218ENST00000541615 DNAH3Q8TD57 4116 aa2.43□□□□□ -2.02
SNHG1-218ENST00000541615 VPS13DQ5THJ4 4388 aa2.42□□□□□ -2.02
SNHG1-218ENST00000541615 TENM3Q9P273 2699 aa2.41□□□□□ -2.02
SNHG1-218ENST00000541615 COL7A1Q02388 2944 aa2.41□□□□□ -2.02
SNHG1-218ENST00000541615 PRKDCP78527 4128 aaKnown RBP2.39□□□□□ -2.03
SNHG1-218ENST00000541615 DMBT1Q9UGM3 2413 aaPredicted RBP2.37□□□□□ -2.03
SNHG1-218ENST00000541615 KMT2CQ8NEZ4 4911 aaKnown RBP2.36□□□□□ -2.03
SNHG1-218ENST00000541615 FRAS1Q86XX4 4008 aa2.35□□□□□ -2.03
SNHG1-218ENST00000541615 TNP1P09430 55 aa2.35□□□□□ -2.03
SNHG1-218ENST00000541615 KRTAP1-4P0C5Y4 121 aa2.34□□□□□ -2.03
SNHG1-218ENST00000541615 STAB2Q8WWQ8 2551 aa2.33□□□□□ -2.04
SNHG1-218ENST00000541615 A0A1B0GVY2 172 aa2.32□□□□□ -2.04
SNHG1-218ENST00000541615 RYR3Q15413 4870 aa2.31□□□□□ -2.04
SNHG1-218ENST00000541615 HUWE1Q7Z6Z7 4374 aaKnown RBP2.31□□□□□ -2.04
SNHG1-218ENST00000541615 DNAH9Q9NYC9 4486 aa2.31□□□□□ -2.04
SNHG1-218ENST00000541615 C9orf92A6NGG3 77 aa2.31□□□□□ -2.04
SNHG1-218ENST00000541615 MT3P25713 68 aa2.31□□□□□ -2.04
SNHG1-218ENST00000541615 LYSTQ99698 3801 aa2.31□□□□□ -2.04
SNHG1-218ENST00000541615 DNAH11Q96DT5 4516 aa2.29□□□□□ -2.04
SNHG1-218ENST00000541615 DYNC2H1Q8NCM8 4307 aaKnown RBP2.29□□□□□ -2.04
SNHG1-218ENST00000541615 DNAH8Q96JB1 4490 aa2.29□□□□□ -2.04
SNHG1-218ENST00000541615 CSMD3Q7Z407 3707 aa2.28□□□□□ -2.04
SNHG1-218ENST00000541615 BIRC6Q9NR09 4857 aa2.27□□□□□ -2.05
SNHG1-218ENST00000541615 DNAH7Q8WXX0 4024 aa2.26□□□□□ -2.05
SNHG1-218ENST00000541615 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
SNHG1-218ENST00000541615 DNAH6Q9C0G6 4158 aa2.24□□□□□ -2.05
SNHG1-218ENST00000541615 EPPK1P58107 5090 aaKnown RBP2.23□□□□□ -2.05
SNHG1-218ENST00000541615 MYCBP2O75592 4640 aa2.21□□□□□ -2.06
SNHG1-218ENST00000541615 HECTD4Q9Y4D8 3996 aa2.21□□□□□ -2.06
SNHG1-218ENST00000541615 PLECQ15149 4684 aaKnown RBP2.21□□□□□ -2.06
SNHG1-218ENST00000541615 RYR1P21817 5038 aa2.21□□□□□ -2.06
SNHG1-218ENST00000541615 DNAH2Q9P225 4427 aa2.21□□□□□ -2.06
SNHG1-218ENST00000541615 DNAH10Q8IVF4 4471 aa2.2□□□□□ -2.06
SNHG1-218ENST00000541615 DNAH17Q9UFH2 4485 aa2.2□□□□□ -2.06
SNHG1-218ENST00000541615 KRTAP5-4Q6L8H1 288 aa2.2□□□□□ -2.06
SNHG1-218ENST00000541615 SACSQ9NZJ4 4579 aa2.2□□□□□ -2.06
SNHG1-218ENST00000541615 RYR2Q92736 4967 aa2.19□□□□□ -2.06
SNHG1-218ENST00000541615 KRTAP10-5P60370 271 aa2.19□□□□□ -2.06
SNHG1-218ENST00000541615 STARD9Q9P2P6 4700 aa2.19□□□□□ -2.06
SNHG1-218ENST00000541615 KRTAP10-10P60014 251 aa2.18□□□□□ -2.06
SNHG1-218ENST00000541615 KRTAP5-9P26371 169 aa2.17□□□□□ -2.06
SNHG1-218ENST00000541615 KRTAP4-4Q9BYR3 166 aa2.17□□□□□ -2.06
SNHG1-218ENST00000541615 PCLOQ9Y6V0 5065 aa2.16□□□□□ -2.06
SNHG1-218ENST00000541615 HYDINQ4G0P3 5121 aa2.15□□□□□ -2.06
SNHG1-218ENST00000541615 KMT2AQ03164 3969 aa2.15□□□□□ -2.07
SNHG1-218ENST00000541615 HERC2O95714 4834 aa2.14□□□□□ -2.07
SNHG1-218ENST00000541615 KRTAP9-6A8MVA2 160 aa2.13□□□□□ -2.07
SNHG1-218ENST00000541615 DNAH5Q8TE73 4624 aa2.1□□□□□ -2.07
SNHG1-218ENST00000541615 PKD1P98161 4303 aa2.09□□□□□ -2.07
SNHG1-218ENST00000541615 APOBP04114 4563 aaKnown RBP2.08□□□□□ -2.08
SNHG1-218ENST00000541615 KRTAP10-1P60331 282 aa2.08□□□□□ -2.08
SNHG1-218ENST00000541615 FAT2Q9NYQ8 4349 aa2.08□□□□□ -2.08
SNHG1-218ENST00000541615 KIAA1109Q2LD37 5005 aa2.07□□□□□ -2.08
SNHG1-218ENST00000541615 PKHD1P08F94 4074 aa2.06□□□□□ -2.08
SNHG1-218ENST00000541615 KRTAP8-1Q8IUC2 63 aa2.05□□□□□ -2.08
SNHG1-218ENST00000541615 KRTAP10-12P60413 245 aa2.04□□□□□ -2.08
SNHG1-218ENST00000541615 HERC1Q15751 4861 aa2.03□□□□□ -2.08
SNHG1-218ENST00000541615 OBSCNQ5VST9 7968 aa2.03□□□□□ -2.08
SNHG1-218ENST00000541615 DYNC1H1Q14204 4646 aaKnown RBP2.03□□□□□ -2.08
SNHG1-218ENST00000541615 LRP1BQ9NZR2 4599 aa2.02□□□□□ -2.09
SNHG1-218ENST00000541615 ABCA13Q86UQ4 5058 aa2.01□□□□□ -2.09
SNHG1-218ENST00000541615 PKHD1L1Q86WI1 4243 aa2.01□□□□□ -2.09
SNHG1-218ENST00000541615 LRP1Q07954 4544 aaKnown RBP2.01□□□□□ -2.09
SNHG1-218ENST00000541615 FLGP20930 4061 aaPredicted RBP2.01□□□□□ -2.09
SNHG1-218ENST00000541615 LCE1FQ5T754 118 aa2□□□□□ -2.09
SNHG1-218ENST00000541615 HSPG2P98160 4391 aa2□□□□□ -2.09
SNHG1-218ENST00000541615 VPS13BQ7Z7G8 4022 aa1.99□□□□□ -2.09
SNHG1-218ENST00000541615 M0R2T5 61 aa1.97□□□□□ -2.09
SNHG1-218ENST00000541615 SMR3BP02814 79 aaPredicted RBP1.96□□□□□ -2.1
SNHG1-218ENST00000541615 KRTAP10-4P60372 401 aaPredicted RBP1.96□□□□□ -2.1
SNHG1-218ENST00000541615 LCE3AQ5TA76 89 aa1.96□□□□□ -2.1
SNHG1-218ENST00000541615 FAT1Q14517 4588 aa1.94□□□□□ -2.1
SNHG1-218ENST00000541615 FAT3Q8TDW7 4589 aa1.94□□□□□ -2.1
SNHG1-218ENST00000541615 KRTAP2-3P0C7H8 128 aa1.94□□□□□ -2.1
SNHG1-218ENST00000541615 KRTAP12-3P60328 96 aa1.94□□□□□ -2.1
SNHG1-218ENST00000541615 KRTAP2-4Q9BYR9 128 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms