RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 DNAH5Q8TE73 4624 aa4.68□□□□□ -1.66
SNHG1-209ENST00000538654 KRTAP10-6P60371 365 aaPredicted RBP4.68□□□□□ -1.66
SNHG1-209ENST00000538654 LRP1BQ9NZR2 4599 aa4.66□□□□□ -1.66
SNHG1-209ENST00000538654 A0A0D9SG42 100 aa4.66□□□□□ -1.66
SNHG1-209ENST00000538654 KRTAP15-1Q3LI76 137 aa4.66□□□□□ -1.66
SNHG1-209ENST00000538654 KRTAP13-4Q3LI77 160 aa4.64□□□□□ -1.67
SNHG1-209ENST00000538654 VPS13BQ7Z7G8 4022 aa4.63□□□□□ -1.67
SNHG1-209ENST00000538654 S4R3F8 94 aa4.61□□□□□ -1.67
SNHG1-209ENST00000538654 PKD1P98161 4303 aa4.6□□□□□ -1.67
SNHG1-209ENST00000538654 C10orf95Q9H7T3 257 aa4.6□□□□□ -1.67
SNHG1-209ENST00000538654 SACSQ9NZJ4 4579 aa4.57□□□□□ -1.68
SNHG1-209ENST00000538654 KRTAP12-2P59991 146 aa4.54□□□□□ -1.68
SNHG1-209ENST00000538654 XP32Q5T750 250 aa4.52□□□□□ -1.69
SNHG1-209ENST00000538654 SMR3BP02814 79 aaPredicted RBP4.51□□□□□ -1.69
SNHG1-209ENST00000538654 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
SNHG1-209ENST00000538654 FAT2Q9NYQ8 4349 aa4.51□□□□□ -1.69
SNHG1-209ENST00000538654 PKHD1L1Q86WI1 4243 aa4.5□□□□□ -1.69
SNHG1-209ENST00000538654 PRO2289Q9P1D8 64 aa4.5□□□□□ -1.69
SNHG1-209ENST00000538654 M0QZ58 72 aa4.49□□□□□ -1.69
SNHG1-209ENST00000538654 DMBT1Q9UGM3 2413 aaPredicted RBP4.49□□□□□ -1.69
SNHG1-209ENST00000538654 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
SNHG1-209ENST00000538654 KRTAP10-8P60410 259 aa4.45□□□□□ -1.7
SNHG1-209ENST00000538654 PKHD1P08F94 4074 aa4.45□□□□□ -1.7
SNHG1-209ENST00000538654 APOBP04114 4563 aaKnown RBP4.4□□□□□ -1.71
SNHG1-209ENST00000538654 HYDINQ4G0P3 5121 aa4.38□□□□□ -1.71
SNHG1-209ENST00000538654 A0A1B0GVY2 172 aa4.36□□□□□ -1.71
SNHG1-209ENST00000538654 PLAC4Q8WY50 150 aa4.35□□□□□ -1.71
SNHG1-209ENST00000538654 DNHD1Q96M86 4753 aa4.32□□□□□ -1.72
SNHG1-209ENST00000538654 LRP1Q07954 4544 aaKnown RBP4.31□□□□□ -1.72
SNHG1-209ENST00000538654 DYNC1H1Q14204 4646 aaKnown RBP4.3□□□□□ -1.72
SNHG1-209ENST00000538654 FAT3Q8TDW7 4589 aa4.3□□□□□ -1.72
SNHG1-209ENST00000538654 TNXBP22105 4242 aa4.29□□□□□ -1.72
SNHG1-209ENST00000538654 FAT1Q14517 4588 aa4.28□□□□□ -1.73
SNHG1-209ENST00000538654 PP632Q6XCG6 107 aa4.26□□□□□ -1.73
SNHG1-209ENST00000538654 HSPG2P98160 4391 aa4.25□□□□□ -1.73
SNHG1-209ENST00000538654 Q5VSD8 79 aa4.2□□□□□ -1.74
SNHG1-209ENST00000538654 LCE4AQ5TA78 99 aa4.16□□□□□ -1.74
SNHG1-209ENST00000538654 MT1HL1P0DM35 61 aa4.11□□□□□ -1.75
SNHG1-209ENST00000538654 MYCBP2O75592 4640 aa4.09□□□□□ -1.76
SNHG1-209ENST00000538654 LCE5AQ5TCM9 118 aa4.04□□□□□ -1.76
SNHG1-209ENST00000538654 SPRR5A0A1B0GTR4 108 aa4.01□□□□□ -1.77
SNHG1-209ENST00000538654 KRTAP21-3Q3LHN1 58 aa4.01□□□□□ -1.77
SNHG1-209ENST00000538654 LPAP08519 4548 aa4□□□□□ -1.77
SNHG1-209ENST00000538654 TNP1P09430 55 aa4□□□□□ -1.77
SNHG1-209ENST00000538654 LRP2P98164 4655 aa3.98□□□□□ -1.77
SNHG1-209ENST00000538654 KMT2CQ8NEZ4 4911 aaKnown RBP3.98□□□□□ -1.77
SNHG1-209ENST00000538654 RYR2Q92736 4967 aa3.97□□□□□ -1.77
SNHG1-209ENST00000538654 INE1O15225 51 aa3.97□□□□□ -1.77
SNHG1-209ENST00000538654 KRTAP9-6A0A140TA67 174 aa3.95□□□□□ -1.78
SNHG1-209ENST00000538654 KRTAP9-7A8MTY7 169 aa3.95□□□□□ -1.78
SNHG1-209ENST00000538654 KRTAP17-1Q9BYP8 105 aa3.93□□□□□ -1.78
SNHG1-209ENST00000538654 KRTAP9-4Q9BYQ2 154 aa3.93□□□□□ -1.78
SNHG1-209ENST00000538654 KRTAP19-1Q8IUB9 90 aa3.92□□□□□ -1.78
SNHG1-209ENST00000538654 RYR1P21817 5038 aa3.89□□□□□ -1.79
SNHG1-209ENST00000538654 MUC17Q685J3 4493 aa3.86□□□□□ -1.79
SNHG1-209ENST00000538654 KRTAP19-2Q3LHN2 52 aa3.86□□□□□ -1.79
SNHG1-209ENST00000538654 KRTAP4-1Q9BYQ7 146 aa3.86□□□□□ -1.79
SNHG1-209ENST00000538654 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
SNHG1-209ENST00000538654 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
SNHG1-209ENST00000538654 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.81□□□□□ -1.8
SNHG1-209ENST00000538654 LOC100996750A0A140TA64 210 aa3.8□□□□□ -1.8
SNHG1-209ENST00000538654 KRTAP4-6Q9BYQ5 205 aa3.8□□□□□ -1.8
SNHG1-209ENST00000538654 RYR3Q15413 4870 aa3.77□□□□□ -1.81
SNHG1-209ENST00000538654 KRTAP9-2Q9BYQ4 174 aa3.76□□□□□ -1.81
SNHG1-209ENST00000538654 KIAA1109Q2LD37 5005 aa3.75□□□□□ -1.81
SNHG1-209ENST00000538654 KRTAP2-2Q9BYT5 123 aa3.74□□□□□ -1.81
SNHG1-209ENST00000538654 KRTAP4-12Q9BQ66 201 aa3.72□□□□□ -1.81
SNHG1-209ENST00000538654 ABCA13Q86UQ4 5058 aa3.71□□□□□ -1.82
SNHG1-209ENST00000538654 FLGP20930 4061 aaPredicted RBP3.7□□□□□ -1.82
SNHG1-209ENST00000538654 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
SNHG1-209ENST00000538654 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
SNHG1-209ENST00000538654 KRTAP4-8Q9BYQ9 185 aa3.68□□□□□ -1.82
SNHG1-209ENST00000538654 KRTAP4-5Q9BYR2 181 aa3.67□□□□□ -1.82
SNHG1-209ENST00000538654 HERC1Q15751 4861 aa3.67□□□□□ -1.82
SNHG1-209ENST00000538654 KRTAP8-1Q8IUC2 63 aa3.64□□□□□ -1.83
SNHG1-209ENST00000538654 EPPK1P58107 5090 aaKnown RBP3.64□□□□□ -1.83
SNHG1-209ENST00000538654 KRTAP19-4Q3LI73 84 aa3.64□□□□□ -1.83
SNHG1-209ENST00000538654 LCE3CQ5T5A8 94 aa3.63□□□□□ -1.83
SNHG1-209ENST00000538654 LCE3BQ5TA77 95 aa3.63□□□□□ -1.83
SNHG1-209ENST00000538654 KRTAP9-3Q9BYQ3 159 aa3.6□□□□□ -1.83
SNHG1-209ENST00000538654 LCE1EQ5T753 118 aa3.54□□□□□ -1.84
SNHG1-209ENST00000538654 KRTAP12-3P60328 96 aa3.53□□□□□ -1.84
SNHG1-209ENST00000538654 M0R2T5 61 aa3.5□□□□□ -1.85
SNHG1-209ENST00000538654 BIRC6Q9NR09 4857 aa3.49□□□□□ -1.85
SNHG1-209ENST00000538654 KRTAP10-12P60413 245 aa3.49□□□□□ -1.85
SNHG1-209ENST00000538654 KRTAP19-8Q3LI54 63 aa3.49□□□□□ -1.85
SNHG1-209ENST00000538654 KRTAP10-10P60014 251 aa3.47□□□□□ -1.85
SNHG1-209ENST00000538654 KRTAP10-5P60370 271 aa3.45□□□□□ -1.86
SNHG1-209ENST00000538654 LCE1AQ5T7P2 110 aa3.45□□□□□ -1.86
SNHG1-209ENST00000538654 PCLOQ9Y6V0 5065 aa3.45□□□□□ -1.86
SNHG1-209ENST00000538654 MUC2Q02817 5179 aa3.44□□□□□ -1.86
SNHG1-209ENST00000538654 MT2AP02795 61 aa3.43□□□□□ -1.86
SNHG1-209ENST00000538654 MT1FP04733 61 aa3.43□□□□□ -1.86
SNHG1-209ENST00000538654 MT1XP80297 61 aa3.43□□□□□ -1.86
SNHG1-209ENST00000538654 HERC2O95714 4834 aa3.43□□□□□ -1.86
SNHG1-209ENST00000538654 MT1HP80294 61 aa3.41□□□□□ -1.86
SNHG1-209ENST00000538654 LCE3EQ5T5B0 92 aa3.4□□□□□ -1.86
SNHG1-209ENST00000538654 MT1BP07438 61 aa3.39□□□□□ -1.87
SNHG1-209ENST00000538654 KRTAP9-8Q9BYQ0 159 aa3.37□□□□□ -1.87
SNHG1-209ENST00000538654 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms