RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 TTC28Q96AY4 2481 aa1.07□□□□□ -2.24
SKA3-207ENST00000536239 TGP01266 2768 aa1.07□□□□□ -2.24
SKA3-207ENST00000536239 COL7A1Q02388 2944 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 CFAP46Q8IYW2 2715 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 PKD1L2Q7Z442 2459 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 PIEZO1Q92508 2521 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 ITPR3Q14573 2671 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 ANKRD11Q6UB99 2663 aaPredicted RBP1.06□□□□□ -2.24
SKA3-207ENST00000536239 NBEAL1Q6ZS30 2694 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 ASPMQ8IZT6 3477 aa1.06□□□□□ -2.24
SKA3-207ENST00000536239 LRRK2Q5S007 2527 aa1.05□□□□□ -2.24
SKA3-207ENST00000536239 SETD2Q9BYW2 2564 aaPredicted RBP1.05□□□□□ -2.24
SKA3-207ENST00000536239 AKAP9Q99996 3911 aa1.05□□□□□ -2.24
SKA3-207ENST00000536239 MYO15AQ9UKN7 3530 aa1.05□□□□□ -2.24
SKA3-207ENST00000536239 FBN2P35556 2912 aa1.04□□□□□ -2.24
SKA3-207ENST00000536239 SMR3AQ99954 134 aa1.04□□□□□ -2.24
SKA3-207ENST00000536239 HIVEP1P15822 2718 aa1.03□□□□□ -2.24
SKA3-207ENST00000536239 ACANP16112 2415 aa1.03□□□□□ -2.24
SKA3-207ENST00000536239 C9orf92A6NGG3 77 aa1.03□□□□□ -2.24
SKA3-207ENST00000536239 TNP1P09430 55 aa1.03□□□□□ -2.24
SKA3-207ENST00000536239 PKD1L1Q8TDX9 2849 aa1.03□□□□□ -2.24
SKA3-207ENST00000536239 MUC3AQ02505 3323 aa1.02□□□□□ -2.25
SKA3-207ENST00000536239 USP9YO00507 2555 aaPredicted RBP1.02□□□□□ -2.25
SKA3-207ENST00000536239 ABCA12Q86UK0 2595 aa1.02□□□□□ -2.25
SKA3-207ENST00000536239 CACNA1AO00555 2505 aa1.01□□□□□ -2.25
SKA3-207ENST00000536239 EPG5Q9HCE0 2579 aa1.01□□□□□ -2.25
SKA3-207ENST00000536239 FASNP49327 2511 aaKnown RBP1.01□□□□□ -2.25
SKA3-207ENST00000536239 ITPR2Q14571 2701 aa1.01□□□□□ -2.25
SKA3-207ENST00000536239 ACACBO00763 2458 aa1□□□□□ -2.25
SKA3-207ENST00000536239 CSMD2Q7Z408 3487 aa1□□□□□ -2.25
SKA3-207ENST00000536239 ZNF292O60281 2723 aa1□□□□□ -2.25
SKA3-207ENST00000536239 VPS13DQ5THJ4 4388 aa1□□□□□ -2.25
SKA3-207ENST00000536239 ZANQ9Y493 2812 aa1□□□□□ -2.25
SKA3-207ENST00000536239 NBPF19A0A087WUL8 3843 aa1□□□□□ -2.25
SKA3-207ENST00000536239 BDP1A6H8Y1 2624 aa1□□□□□ -2.25
SKA3-207ENST00000536239 STAB2Q8WWQ8 2551 aa1□□□□□ -2.25
SKA3-207ENST00000536239 TENM1Q9UKZ4 2725 aa0.99□□□□□ -2.25
SKA3-207ENST00000536239 ATRQ13535 2644 aa0.99□□□□□ -2.25
SKA3-207ENST00000536239 POLQO75417 2590 aa0.99□□□□□ -2.25
SKA3-207ENST00000536239 TEP1Q99973 2627 aaKnown RBP0.99□□□□□ -2.25
SKA3-207ENST00000536239 FRAS1Q86XX4 4008 aa0.98□□□□□ -2.25
SKA3-207ENST00000536239 USP24Q9UPU5 2620 aa0.98□□□□□ -2.25
SKA3-207ENST00000536239 NOTCH1P46531 2555 aa0.98□□□□□ -2.25
SKA3-207ENST00000536239 CSMD3Q7Z407 3707 aa0.98□□□□□ -2.25
SKA3-207ENST00000536239 NSD1Q96L73 2696 aaPredicted RBP0.98□□□□□ -2.25
SKA3-207ENST00000536239 BSNQ9UPA5 3926 aa0.97□□□□□ -2.25
SKA3-207ENST00000536239 MYO18BQ8IUG5 2567 aa0.97□□□□□ -2.25
SKA3-207ENST00000536239 SVEP1Q4LDE5 3571 aa0.97□□□□□ -2.25
SKA3-207ENST00000536239 TRRAPQ9Y4A5 3859 aa0.95□□□□□ -2.26
SKA3-207ENST00000536239 TENM3Q9P273 2699 aa0.95□□□□□ -2.26
SKA3-207ENST00000536239 ANK3Q12955 4377 aaKnown RBP0.95□□□□□ -2.26
SKA3-207ENST00000536239 DNAH1Q9P2D7 4330 aa0.95□□□□□ -2.26
SKA3-207ENST00000536239 FLNAP21333 2647 aaKnown RBP0.95□□□□□ -2.26
SKA3-207ENST00000536239 FLNCQ14315 2725 aa0.95□□□□□ -2.26
SKA3-207ENST00000536239 VPS13CQ709C8 3753 aa0.94□□□□□ -2.26
SKA3-207ENST00000536239 CUBNO60494 3623 aa0.93□□□□□ -2.26
SKA3-207ENST00000536239 MAST4O15021 2626 aa0.93□□□□□ -2.26
SKA3-207ENST00000536239 STAB1Q9NY15 2570 aa0.93□□□□□ -2.26
SKA3-207ENST00000536239 IGSF10Q6WRI0 2623 aa0.92□□□□□ -2.26
SKA3-207ENST00000536239 DNAH8Q96JB1 4490 aa0.92□□□□□ -2.26
SKA3-207ENST00000536239 MGAM2Q2M2H8 2515 aa0.91□□□□□ -2.26
SKA3-207ENST00000536239 FLNBO75369 2602 aaKnown RBP0.91□□□□□ -2.26
SKA3-207ENST00000536239 KRTAP8-1Q8IUC2 63 aa0.91□□□□□ -2.26
SKA3-207ENST00000536239 ANK2Q01484 3957 aa0.91□□□□□ -2.26
SKA3-207ENST00000536239 CMYA5Q8N3K9 4069 aa0.91□□□□□ -2.26
SKA3-207ENST00000536239 LYSTQ99698 3801 aa0.91□□□□□ -2.26
SKA3-207ENST00000536239 DNAH17Q9UFH2 4485 aa0.9□□□□□ -2.26
SKA3-207ENST00000536239 DNAH6Q9C0G6 4158 aa0.89□□□□□ -2.27
SKA3-207ENST00000536239 DNAH11Q96DT5 4516 aa0.89□□□□□ -2.27
SKA3-207ENST00000536239 DNAH10Q8IVF4 4471 aa0.89□□□□□ -2.27
SKA3-207ENST00000536239 KRTAP2-3P0C7H8 128 aa0.88□□□□□ -2.27
SKA3-207ENST00000536239 KRTAP2-4Q9BYR9 128 aa0.88□□□□□ -2.27
SKA3-207ENST00000536239 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
SKA3-207ENST00000536239 DYNC2H1Q8NCM8 4307 aaKnown RBP0.88□□□□□ -2.27
SKA3-207ENST00000536239 DNAH9Q9NYC9 4486 aa0.88□□□□□ -2.27
SKA3-207ENST00000536239 PRKDCP78527 4128 aaKnown RBP0.87□□□□□ -2.27
SKA3-207ENST00000536239 DNAH3Q8TD57 4116 aa0.87□□□□□ -2.27
SKA3-207ENST00000536239 AHNAK2Q8IVF2 5795 aa0.87□□□□□ -2.27
SKA3-207ENST00000536239 HUWE1Q7Z6Z7 4374 aaKnown RBP0.87□□□□□ -2.27
SKA3-207ENST00000536239 MYCBP2O75592 4640 aa0.86□□□□□ -2.27
SKA3-207ENST00000536239 J3QKU1 62 aa0.86□□□□□ -2.27
SKA3-207ENST00000536239 M0R2T5 61 aa0.86□□□□□ -2.27
SKA3-207ENST00000536239 KMT2AQ03164 3969 aa0.86□□□□□ -2.27
SKA3-207ENST00000536239 KRTAP10-4P60372 401 aaPredicted RBP0.85□□□□□ -2.27
SKA3-207ENST00000536239 KRTAP6-3Q3LI67 103 aa0.85□□□□□ -2.27
SKA3-207ENST00000536239 DNAH2Q9P225 4427 aa0.85□□□□□ -2.27
SKA3-207ENST00000536239 HECTD4Q9Y4D8 3996 aa0.85□□□□□ -2.27
SKA3-207ENST00000536239 DNAH7Q8WXX0 4024 aa0.84□□□□□ -2.27
SKA3-207ENST00000536239 SMR3BP02814 79 aaPredicted RBP0.83□□□□□ -2.28
SKA3-207ENST00000536239 KRTAP21-3Q3LHN1 58 aa0.83□□□□□ -2.28
SKA3-207ENST00000536239 PKD1P98161 4303 aa0.83□□□□□ -2.28
SKA3-207ENST00000536239 FLGP20930 4061 aaPredicted RBP0.81□□□□□ -2.28
SKA3-207ENST00000536239 SPRR2GQ9BYE4 73 aa0.81□□□□□ -2.28
SKA3-207ENST00000536239 SACSQ9NZJ4 4579 aa0.8□□□□□ -2.28
SKA3-207ENST00000536239 KRTAP5-10Q6L8G5 202 aa0.8□□□□□ -2.28
SKA3-207ENST00000536239 STARD9Q9P2P6 4700 aa0.79□□□□□ -2.28
SKA3-207ENST00000536239 ZNF469Q96JG9 3925 aaPredicted RBP0.79□□□□□ -2.28
SKA3-207ENST00000536239 HSPG2P98160 4391 aa0.79□□□□□ -2.28
SKA3-207ENST00000536239 PKHD1P08F94 4074 aa0.79□□□□□ -2.28
SKA3-207ENST00000536239 LRP1Q07954 4544 aaKnown RBP0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms