RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 TRAV22A0A0B4J277 110 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 IGKV3D-7A0A0C4DH55 119 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 LINC00959A0A1B0GUT2 108 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 hDV103S1A0JD37 113 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 IGKV2-29A2NJV5 120 aaPredicted RBP1.25□□□□□ -2.21
SYNE1-232ENST00000535081 D6R8Y8 96 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 DNAL4O96015 105 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 SPAG11BQ08648 103 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 CLEC2BQ92478 149 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 TMEM141Q96I45 108 aa1.25□□□□□ -2.21
SYNE1-232ENST00000535081 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.24□□□□□ -2.21
SYNE1-232ENST00000535081 TRAV23DV6A0A075B6W5 121 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 A0A087WVE0 104 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 TRBV7-4A0A0J9YYF1 115 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 C11orf86A6NJI1 115 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 HCG22E2RYF7 251 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 H7C2G1 150 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 I3L3M4 83 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 SPINK1P00995 79 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 BAALC-AS2P0C853 105 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 LYZL1Q6UWQ5 148 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 Q86TA4 180 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 OBSCN-AS1Q96MR7 158 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 LIMD2Q9BT23 127 aa1.24□□□□□ -2.21
SYNE1-232ENST00000535081 MUC17Q685J3 4493 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 A0A1B0GW54 56 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 IGIPA6NJ69 53 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 M0QY20 66 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 LEPROTO15243 131 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 PPP1R17O96001 155 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 KRTAP20-1Q3LI63 56 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 Q5VV11 94 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 MUSTN1Q8IVN3 82 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 SPTSSBQ8NFR3 76 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 TMEM254Q8TBM7 123 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 SCGB3A1Q96QR1 104 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 CDC42SE1Q9NRR8 79 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 SNURFQ9Y675 71 aa1.23□□□□□ -2.21
SYNE1-232ENST00000535081 SYNE2Q8WXH0 6885 aaKnown RBP1.22□□□□□ -2.21
SYNE1-232ENST00000535081 CHKB-CPT1BH3BT56 60 aa1.22□□□□□ -2.21
SYNE1-232ENST00000535081 AMELXQ99217 191 aa1.22□□□□□ -2.21
SYNE1-232ENST00000535081 CNFNQ9BYD5 112 aa1.22□□□□□ -2.21
SYNE1-232ENST00000535081 C22orf24Q9Y442 160 aa1.22□□□□□ -2.21
SYNE1-232ENST00000535081 USH2AO75445 5202 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 RPS29P62273 56 aaKnown RBP1.21□□□□□ -2.22
SYNE1-232ENST00000535081 NREPQ16612 68 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 UBL5Q9BZL1 73 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 CDC42SE2Q9NRR3 84 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 C6orf48Q9UBA6 75 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 SSPOA2VEC9 5147 aa1.21□□□□□ -2.22
SYNE1-232ENST00000535081 MACF1Q9UPN3 7388 aaKnown RBP1.2□□□□□ -2.22
SYNE1-232ENST00000535081 LOC101927531A0A1B0GV80 90 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 C9orf92A6NGG3 77 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 JMJD7-PLA2G4BH0Y9G9 81 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 CRIP1P50238 77 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 TSPEAR-AS2P59090 65 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 ELOF1P60002 83 aaKnown RBP1.2□□□□□ -2.22
SYNE1-232ENST00000535081 PRLHP81277 87 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 UNQ6190/PRO20217Q6UXQ8 127 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 CASC2Q6XLA1 102 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 SMIM2Q9BVW6 85 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 XAGE1AQ9HD64 81 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 C14orf132Q9NPU4 83 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 TOMM7Q9P0U1 55 aa1.2□□□□□ -2.22
SYNE1-232ENST00000535081 H0YGX0 51 aa1.19□□□□□ -2.22
SYNE1-232ENST00000535081 NDUFB1O75438 58 aa1.19□□□□□ -2.22
SYNE1-232ENST00000535081 RPL39LQ96EH5 51 aaKnown RBP1.19□□□□□ -2.22
SYNE1-232ENST00000535081 Q9BRP9 147 aa1.19□□□□□ -2.22
SYNE1-232ENST00000535081 PRR15LQ9BU68 103 aa1.19□□□□□ -2.22
SYNE1-232ENST00000535081 LOC110117498A0A087WWA1 95 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 TRBV6-5A0A0K0K1A5 114 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 PDE6GP18545 87 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 KRTAP19-2Q3LHN2 52 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 SSBP3-AS1Q7Z2R9 100 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 ZNF625Q96I27 306 aaPredicted RBP1.18□□□□□ -2.22
SYNE1-232ENST00000535081 SPRR4Q96PI1 79 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 ORMDL1Q9P0S3 153 aa1.18□□□□□ -2.22
SYNE1-232ENST00000535081 ETDCA0A1B0GVM5 59 aa1.17□□□□□ -2.22
SYNE1-232ENST00000535081 NCR3O14931 201 aa1.17□□□□□ -2.22
SYNE1-232ENST00000535081 ROMO1P60602 79 aa1.17□□□□□ -2.22
SYNE1-232ENST00000535081 Q8IZM0 81 aa1.17□□□□□ -2.22
SYNE1-232ENST00000535081 LINC01558Q9Y6Z2 57 aa1.17□□□□□ -2.22
SYNE1-232ENST00000535081 RPL37P61927 97 aaKnown RBP1.16□□□□□ -2.22
SYNE1-232ENST00000535081 Q6ZQT0 140 aa1.16□□□□□ -2.22
SYNE1-232ENST00000535081 LINC00308Q8TCZ7 52 aa1.16□□□□□ -2.22
SYNE1-232ENST00000535081 LINC00208Q96KT6 92 aa1.16□□□□□ -2.22
SYNE1-232ENST00000535081 H3BPC8 53 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 KRTAP2-3P0C7H8 128 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 POLR2KP53803 58 aaKnown RBP1.15□□□□□ -2.23
SYNE1-232ENST00000535081 KRTAP19-6Q3LI70 58 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 CSAG1Q6PB30 78 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 COX7B2Q8TF08 81 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 KRTAP2-4Q9BYR9 128 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 NEBP20929 6669 aa1.15□□□□□ -2.23
SYNE1-232ENST00000535081 A0A087WSZ3 146 aa1.14□□□□□ -2.23
SYNE1-232ENST00000535081 H0Y9P7 68 aa1.14□□□□□ -2.23
SYNE1-232ENST00000535081 RPL39P62891 51 aaKnown RBP1.14□□□□□ -2.23
SYNE1-232ENST00000535081 MIR22HGQ0VDD5 57 aa1.14□□□□□ -2.23
SYNE1-232ENST00000535081 COX17Q14061 63 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms