RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 LRRK2Q5S007 2527 aa0.04□□□□□ -2.4
USP47-211ENST00000531513 DNHD1Q96M86 4753 aa0.03□□□□□ -2.4
USP47-211ENST00000531513 FLGP20930 4061 aaPredicted RBP0.03□□□□□ -2.4
USP47-211ENST00000531513 CELSR3Q9NYQ7 3312 aa0.03□□□□□ -2.4
USP47-211ENST00000531513 CLPSL2Q6UWE3 100 aa0.03□□□□□ -2.4
USP47-211ENST00000531513 USP9YO00507 2555 aaPredicted RBP0.03□□□□□ -2.4
USP47-211ENST00000531513 GCN1Q92616 2671 aaKnown RBP0.03□□□□□ -2.4
USP47-211ENST00000531513 SVEP1Q4LDE5 3571 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 NBEAL1Q6ZS30 2694 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 LAMA3Q16787 3333 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 MXRA5Q9NR99 2828 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 ZZEF1O43149 2961 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 CUBNO60494 3623 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 DMXL1Q9Y485 3027 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 TGP01266 2768 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 SAMD9LQ8IVG5 1584 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 DNAH3Q8TD57 4116 aa0.02□□□□□ -2.41
USP47-211ENST00000531513 ITPR3Q14573 2671 aa0.01□□□□□ -2.41
USP47-211ENST00000531513 MGAM2Q2M2H8 2515 aa0.01□□□□□ -2.41
USP47-211ENST00000531513 SRRM2Q9UQ35 2752 aaKnown RBP-0□□□□□ -2.41
USP47-211ENST00000531513 SPG11Q96JI7 2443 aa-0.01□□□□□ -2.41
USP47-211ENST00000531513 TACC2O95359 2948 aa-0.01□□□□□ -2.41
USP47-211ENST00000531513 MAP1AP78559 2803 aaPredicted RBP-0.01□□□□□ -2.41
USP47-211ENST00000531513 CFAP46Q8IYW2 2715 aa-0.01□□□□□ -2.41
USP47-211ENST00000531513 CSMD1Q96PZ7 3565 aa-0.01□□□□□ -2.41
USP47-211ENST00000531513 APOBP04114 4563 aaKnown RBP-0.01□□□□□ -2.41
USP47-211ENST00000531513 ZFHX4Q86UP3 3567 aa-0.02□□□□□ -2.41
USP47-211ENST00000531513 POLR2KP53803 58 aaKnown RBP-0.02□□□□□ -2.41
USP47-211ENST00000531513 KRTAP6-1Q3LI64 71 aa-0.02□□□□□ -2.41
USP47-211ENST00000531513 KRTAP8-1Q8IUC2 63 aa-0.02□□□□□ -2.41
USP47-211ENST00000531513 A0A0C4DFX4 3053 aa-0.02□□□□□ -2.41
USP47-211ENST00000531513 KALRNO60229 2985 aa-0.03□□□□□ -2.41
USP47-211ENST00000531513 DNAH2Q9P225 4427 aa-0.03□□□□□ -2.41
USP47-211ENST00000531513 MT4P47944 62 aa-0.03□□□□□ -2.41
USP47-211ENST00000531513 SPART-AS1P0CW21 52 aa-0.04□□□□□ -2.42
USP47-211ENST00000531513 KRTAP19-6Q3LI70 58 aa-0.04□□□□□ -2.42
USP47-211ENST00000531513 STARD9Q9P2P6 4700 aa-0.04□□□□□ -2.42
USP47-211ENST00000531513 LAMA2P24043 3122 aaKnown RBP-0.04□□□□□ -2.42
USP47-211ENST00000531513 UTP20O75691 2785 aaKnown RBP-0.04□□□□□ -2.42
USP47-211ENST00000531513 WDR87Q6ZQQ6 2873 aa-0.04□□□□□ -2.42
USP47-211ENST00000531513 DNAH7Q8WXX0 4024 aa-0.04□□□□□ -2.42
USP47-211ENST00000531513 LAMA5O15230 3695 aa-0.05□□□□□ -2.42
USP47-211ENST00000531513 MYO15AQ9UKN7 3530 aa-0.05□□□□□ -2.42
USP47-211ENST00000531513 HTTP42858 3142 aa-0.05□□□□□ -2.42
USP47-211ENST00000531513 TLN1Q9Y490 2541 aaKnown RBP-0.05□□□□□ -2.42
USP47-211ENST00000531513 SRCAPQ6ZRS2 3230 aa-0.05□□□□□ -2.42
USP47-211ENST00000531513 ACACAQ13085 2346 aa-0.05□□□□□ -2.42
USP47-211ENST00000531513 TLN2Q9Y4G6 2542 aa-0.06□□□□□ -2.42
USP47-211ENST00000531513 MKI67P46013 3256 aaKnown RBP-0.06□□□□□ -2.42
USP47-211ENST00000531513 UNC80Q8N2C7 3258 aa-0.06□□□□□ -2.42
USP47-211ENST00000531513 TOP2AP11388 1531 aaKnown RBP-0.06□□□□□ -2.42
USP47-211ENST00000531513 RELNP78509 3460 aa-0.06□□□□□ -2.42
USP47-211ENST00000531513 NBPF19A0A087WUL8 3843 aa-0.06□□□□□ -2.42
USP47-211ENST00000531513 MUC3AQ02505 3323 aa-0.07□□□□□ -2.42
USP47-211ENST00000531513 NBEAQ8NFP9 2946 aa-0.07□□□□□ -2.42
USP47-211ENST00000531513 CEP295Q9C0D2 2601 aa-0.07□□□□□ -2.42
USP47-211ENST00000531513 TEX15Q9BXT5 2789 aa-0.07□□□□□ -2.42
USP47-211ENST00000531513 BOD1L1Q8NFC6 3051 aa-0.07□□□□□ -2.42
USP47-211ENST00000531513 FAT1Q14517 4588 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 MYO9AB2RTY4 2548 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 VPS13DQ5THJ4 4388 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 AKAP9Q99996 3911 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 KRTAP19-5Q3LI72 72 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 KRTAP19-7Q3SYF9 63 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 SZT2Q5T011 3432 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 LAMA1P25391 3075 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 ITPR2Q14571 2701 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 DNAH11Q96DT5 4516 aa-0.08□□□□□ -2.42
USP47-211ENST00000531513 DCHS1Q96JQ0 3298 aa-0.09□□□□□ -2.42
USP47-211ENST00000531513 EP400Q96L91 3159 aa-0.09□□□□□ -2.42
USP47-211ENST00000531513 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.09□□□□□ -2.42
USP47-211ENST00000531513 KRTAP20-2Q3LI61 65 aa-0.09□□□□□ -2.42
USP47-211ENST00000531513 RANBP2P49792 3224 aaKnown RBP-0.09□□□□□ -2.42
USP47-211ENST00000531513 FAM186AA6NE01 2351 aa-0.09□□□□□ -2.42
USP47-211ENST00000531513 DEFB1P60022 68 aa-0.1□□□□□ -2.43
USP47-211ENST00000531513 DNAH6Q9C0G6 4158 aa-0.1□□□□□ -2.43
USP47-211ENST00000531513 DYNC1H1Q14204 4646 aaKnown RBP-0.1□□□□□ -2.43
USP47-211ENST00000531513 PCNTO95613 3336 aa-0.11□□□□□ -2.43
USP47-211ENST00000531513 VPS13CQ709C8 3753 aa-0.11□□□□□ -2.43
USP47-211ENST00000531513 VCANP13611 3396 aa-0.11□□□□□ -2.43
USP47-211ENST00000531513 SMR3BP02814 79 aaPredicted RBP-0.11□□□□□ -2.43
USP47-211ENST00000531513 TRIOO75962 3097 aa-0.11□□□□□ -2.43
USP47-211ENST00000531513 NIPBLQ6KC79 2804 aaeCLIP-0.12□□□□□ -2.43
USP47-211ENST00000531513 FRYQ5TBA9 3013 aa-0.12□□□□□ -2.43
USP47-211ENST00000531513 CSMD2Q7Z408 3487 aa-0.12□□□□□ -2.43
USP47-211ENST00000531513 KRTAP19-8Q3LI54 63 aa-0.13□□□□□ -2.43
USP47-211ENST00000531513 BRCA2P51587 3418 aa-0.13□□□□□ -2.43
USP47-211ENST00000531513 SPEGQ15772 3267 aa-0.13□□□□□ -2.43
USP47-211ENST00000531513 ADGRG4Q8IZF6 3080 aa-0.13□□□□□ -2.43
USP47-211ENST00000531513 SPENQ96T58 3664 aaKnown RBP-0.14□□□□□ -2.43
USP47-211ENST00000531513 EYSQ5T1H1 3165 aa-0.14□□□□□ -2.43
USP47-211ENST00000531513 DNAH1Q9P2D7 4330 aa-0.14□□□□□ -2.43
USP47-211ENST00000531513 CEP250Q9BV73 2442 aa-0.14□□□□□ -2.43
USP47-211ENST00000531513 SPTAN1Q13813 2472 aaKnown RBP-0.14□□□□□ -2.43
USP47-211ENST00000531513 DNAH8Q96JB1 4490 aa-0.15□□□□□ -2.43
USP47-211ENST00000531513 LRBAP50851 2863 aa-0.15□□□□□ -2.43
USP47-211ENST00000531513 USP34Q70CQ2 3546 aa-0.15□□□□□ -2.43
USP47-211ENST00000531513 MT1HP80294 61 aa-0.15□□□□□ -2.43
USP47-211ENST00000531513 PLECQ15149 4684 aaKnown RBP-0.15□□□□□ -2.43
USP47-211ENST00000531513 LOC400499M0QZD8 3231 aa-0.16□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms