RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 SNRPGP15A8MWD9 76 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 H0YGG7 62 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 DMXL1Q9Y485 3027 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 DDX60Q8IY21 1712 aaKnown RBP0.44□□□□□ -2.34
C11orf88-204ENST00000529661 DCHS2Q6V1P9 2916 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 LAMA1P25391 3075 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 CENPEQ02224 2701 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 FRYQ5TBA9 3013 aa0.43□□□□□ -2.34
C11orf88-204ENST00000529661 PLNP26678 52 aa0.43□□□□□ -2.34
C11orf88-204ENST00000529661 CMC2Q9NRP2 79 aa0.43□□□□□ -2.34
C11orf88-204ENST00000529661 LOC400499M0QZD8 3231 aa0.43□□□□□ -2.34
C11orf88-204ENST00000529661 CDH23Q9H251 3354 aa0.43□□□□□ -2.34
C11orf88-204ENST00000529661 XIRP2A4UGR9 3374 aa0.42□□□□□ -2.34
C11orf88-204ENST00000529661 PRLHP81277 87 aa0.42□□□□□ -2.34
C11orf88-204ENST00000529661 S4R3F8 94 aa0.42□□□□□ -2.34
C11orf88-204ENST00000529661 DNAH14Q0VDD8 3507 aa0.42□□□□□ -2.34
C11orf88-204ENST00000529661 HERC2O95714 4834 aa0.41□□□□□ -2.34
C11orf88-204ENST00000529661 HMCN2Q8NDA2 5059 aa0.41□□□□□ -2.34
C11orf88-204ENST00000529661 SRRM2Q9UQ35 2752 aaKnown RBP0.41□□□□□ -2.34
C11orf88-204ENST00000529661 MYO15AQ9UKN7 3530 aa0.41□□□□□ -2.34
C11orf88-204ENST00000529661 IQGAP1P46940 1657 aa0.4□□□□□ -2.34
C11orf88-204ENST00000529661 LPAP08519 4548 aa0.4□□□□□ -2.35
C11orf88-204ENST00000529661 LINC00308Q8TCZ7 52 aa0.4□□□□□ -2.35
C11orf88-204ENST00000529661 CSMD2Q7Z408 3487 aa0.4□□□□□ -2.35
C11orf88-204ENST00000529661 SVEP1Q4LDE5 3571 aa0.4□□□□□ -2.35
C11orf88-204ENST00000529661 WDFY3Q8IZQ1 3526 aa0.39□□□□□ -2.35
C11orf88-204ENST00000529661 MGAQ8IWI9 3026 aa0.39□□□□□ -2.35
C11orf88-204ENST00000529661 LYSTQ99698 3801 aa0.39□□□□□ -2.35
C11orf88-204ENST00000529661 ZZEF1O43149 2961 aa0.38□□□□□ -2.35
C11orf88-204ENST00000529661 H3BUA1 57 aa0.38□□□□□ -2.35
C11orf88-204ENST00000529661 DEFB106AQ8N104 65 aa0.38□□□□□ -2.35
C11orf88-204ENST00000529661 ATMQ13315 3056 aa0.38□□□□□ -2.35
C11orf88-204ENST00000529661 SMG1Q96Q15 3661 aaKnown RBP0.37□□□□□ -2.35
C11orf88-204ENST00000529661 TRIOO75962 3097 aa0.37□□□□□ -2.35
C11orf88-204ENST00000529661 SPRR2BP35325 72 aa0.37□□□□□ -2.35
C11orf88-204ENST00000529661 KIF21BO75037 1637 aa0.37□□□□□ -2.35
C11orf88-204ENST00000529661 SPENQ96T58 3664 aaKnown RBP0.36□□□□□ -2.35
C11orf88-204ENST00000529661 ADGRG4Q8IZF6 3080 aa0.36□□□□□ -2.35
C11orf88-204ENST00000529661 IQGAP2Q13576 1575 aa0.36□□□□□ -2.35
C11orf88-204ENST00000529661 NBPF19A0A087WUL8 3843 aa0.35□□□□□ -2.35
C11orf88-204ENST00000529661 PRUNE2Q8WUY3 3088 aa0.35□□□□□ -2.35
C11orf88-204ENST00000529661 CUBNO60494 3623 aa0.35□□□□□ -2.35
C11orf88-204ENST00000529661 FAM208AQ9UK61 1670 aaKnown RBP0.35□□□□□ -2.35
C11orf88-204ENST00000529661 USH2AO75445 5202 aa0.34□□□□□ -2.35
C11orf88-204ENST00000529661 TIMM8BQ9Y5J9 83 aaPredicted RBP0.34□□□□□ -2.36
C11orf88-204ENST00000529661 TACC2O95359 2948 aa0.34□□□□□ -2.36
C11orf88-204ENST00000529661 LINC01546A6NGU7 62 aa0.33□□□□□ -2.36
C11orf88-204ENST00000529661 CHD7Q9P2D1 2997 aa0.33□□□□□ -2.36
C11orf88-204ENST00000529661 SMIM27A0A1W2PRY6 76 aa0.31□□□□□ -2.36
C11orf88-204ENST00000529661 C9orf92A6NGG3 77 aa0.31□□□□□ -2.36
C11orf88-204ENST00000529661 MUC12Q9UKN1 5478 aa0.31□□□□□ -2.36
C11orf88-204ENST00000529661 LAMA5O15230 3695 aa0.3□□□□□ -2.36
C11orf88-204ENST00000529661 HECTD4Q9Y4D8 3996 aa0.3□□□□□ -2.36
C11orf88-204ENST00000529661 VPS13CQ709C8 3753 aa0.29□□□□□ -2.36
C11orf88-204ENST00000529661 PKD1P98161 4303 aa0.29□□□□□ -2.36
C11orf88-204ENST00000529661 VPS13BQ7Z7G8 4022 aa0.29□□□□□ -2.36
C11orf88-204ENST00000529661 IGLV5-48A0A075B6I7 105 aa0.28□□□□□ -2.36
C11orf88-204ENST00000529661 KRTAP19-6Q3LI70 58 aa0.28□□□□□ -2.36
C11orf88-204ENST00000529661 NOP10Q9NPE3 64 aaKnown RBP0.28□□□□□ -2.36
C11orf88-204ENST00000529661 ABRACLQ9P1F3 81 aa0.28□□□□□ -2.36
C11orf88-204ENST00000529661 HSPG2P98160 4391 aa0.28□□□□□ -2.36
C11orf88-204ENST00000529661 FAT3Q8TDW7 4589 aa0.26□□□□□ -2.37
C11orf88-204ENST00000529661 NFAT5O94916 1531 aa0.25□□□□□ -2.37
C11orf88-204ENST00000529661 MT4P47944 62 aa0.25□□□□□ -2.37
C11orf88-204ENST00000529661 ACACAQ13085 2346 aa0.23□□□□□ -2.37
C11orf88-204ENST00000529661 H3BNG1 76 aa0.23□□□□□ -2.37
C11orf88-204ENST00000529661 SPRR2AP35326 72 aa0.23□□□□□ -2.37
C11orf88-204ENST00000529661 KAAG1Q9UBP8 84 aa0.23□□□□□ -2.37
C11orf88-204ENST00000529661 CLTCL1P53675 1640 aa0.23□□□□□ -2.37
C11orf88-204ENST00000529661 SPRR2EP22531 72 aa0.22□□□□□ -2.37
C11orf88-204ENST00000529661 TFF3Q07654 80 aa0.22□□□□□ -2.37
C11orf88-204ENST00000529661 SMIM2Q9BVW6 85 aa0.22□□□□□ -2.37
C11orf88-204ENST00000529661 LRP1BQ9NZR2 4599 aa0.21□□□□□ -2.38
C11orf88-204ENST00000529661 WFDC10BQ8IUB3 73 aa0.21□□□□□ -2.38
C11orf88-204ENST00000529661 TOMM5Q8N4H5 51 aa0.21□□□□□ -2.38
C11orf88-204ENST00000529661 FLGP20930 4061 aaPredicted RBP0.21□□□□□ -2.38
C11orf88-204ENST00000529661 SACSQ9NZJ4 4579 aa0.21□□□□□ -2.38
C11orf88-204ENST00000529661 PKHD1P08F94 4074 aa0.2□□□□□ -2.38
C11orf88-204ENST00000529661 DMDP11532 3685 aa0.19□□□□□ -2.38
C11orf88-204ENST00000529661 TRPM2O94759 1503 aa0.19□□□□□ -2.38
C11orf88-204ENST00000529661 KRTAP6-2Q3LI66 62 aa0.19□□□□□ -2.38
C11orf88-204ENST00000529661 DNAH3Q8TD57 4116 aa0.18□□□□□ -2.38
C11orf88-204ENST00000529661 MMP24-AS1A0A0U1RRL7 71 aa0.18□□□□□ -2.38
C11orf88-204ENST00000529661 ATP7AQ04656 1500 aa0.18□□□□□ -2.38
C11orf88-204ENST00000529661 LRP2P98164 4655 aa0.17□□□□□ -2.38
C11orf88-204ENST00000529661 PKHD1L1Q86WI1 4243 aa0.16□□□□□ -2.38
C11orf88-204ENST00000529661 M0QY20 66 aa0.16□□□□□ -2.38
C11orf88-204ENST00000529661 DEFB131AP59861 70 aa0.16□□□□□ -2.38
C11orf88-204ENST00000529661 STARD9Q9P2P6 4700 aa0.15□□□□□ -2.39
C11orf88-204ENST00000529661 A8MTW9 85 aa0.15□□□□□ -2.39
C11orf88-204ENST00000529661 MT1AP04731 61 aa0.15□□□□□ -2.39
C11orf88-204ENST00000529661 DYNC1H1Q14204 4646 aaKnown RBP0.15□□□□□ -2.39
C11orf88-204ENST00000529661 ANK3Q12955 4377 aaKnown RBP0.14□□□□□ -2.39
C11orf88-204ENST00000529661 DNAH9Q9NYC9 4486 aa0.14□□□□□ -2.39
C11orf88-204ENST00000529661 SMR3BP02814 79 aaPredicted RBP0.14□□□□□ -2.39
C11orf88-204ENST00000529661 SPRR2GQ9BYE4 73 aa0.13□□□□□ -2.39
C11orf88-204ENST00000529661 NDUFA1O15239 70 aa0.12□□□□□ -2.39
C11orf88-204ENST00000529661 SPRR2FQ96RM1 72 aa0.12□□□□□ -2.39
C11orf88-204ENST00000529661 AKAP9Q99996 3911 aa0.12□□□□□ -2.39
C11orf88-204ENST00000529661 SAMD9LQ8IVG5 1584 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms