RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 COX6B2Q6YFQ2 88 aa3.24□□□□□ -1.89
CD44-225ENST00000527326 VWFP04275 2813 aa3.23□□□□□ -1.89
CD44-225ENST00000527326 SPINK1P00995 79 aa3.22□□□□□ -1.89
CD44-225ENST00000527326 DNAH1Q9P2D7 4330 aa3.21□□□□□ -1.9
CD44-225ENST00000527326 HERC2O95714 4834 aa3.21□□□□□ -1.9
CD44-225ENST00000527326 C14orf177Q52M58 125 aa3.21□□□□□ -1.9
CD44-225ENST00000527326 SPINK6Q6UWN8 80 aa3.21□□□□□ -1.9
CD44-225ENST00000527326 CIRBP-AS1Q8TBR5 109 aa3.21□□□□□ -1.9
CD44-225ENST00000527326 DNAH9Q9NYC9 4486 aa3.2□□□□□ -1.9
CD44-225ENST00000527326 RPL37P61927 97 aaKnown RBP3.19□□□□□ -1.9
CD44-225ENST00000527326 CAMK2N1Q7Z7J9 78 aa3.18□□□□□ -1.9
CD44-225ENST00000527326 TYMSOSQ8TAI1 123 aa3.18□□□□□ -1.9
CD44-225ENST00000527326 TENM2Q9NT68 2774 aa3.17□□□□□ -1.9
CD44-225ENST00000527326 DNAH3Q8TD57 4116 aa3.16□□□□□ -1.9
CD44-225ENST00000527326 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
CD44-225ENST00000527326 ABCA13Q86UQ4 5058 aa3.13□□□□□ -1.91
CD44-225ENST00000527326 CSMD3Q7Z407 3707 aa3.13□□□□□ -1.91
CD44-225ENST00000527326 KRTAP10-3P60369 221 aa3.12□□□□□ -1.91
CD44-225ENST00000527326 LYSTQ99698 3801 aa3.12□□□□□ -1.91
CD44-225ENST00000527326 C10orf95Q9H7T3 257 aa3.12□□□□□ -1.91
CD44-225ENST00000527326 TENM3Q9P273 2699 aa3.12□□□□□ -1.91
CD44-225ENST00000527326 MT3P25713 68 aa3.11□□□□□ -1.91
CD44-225ENST00000527326 UBR4Q5T4S7 5183 aa3.1□□□□□ -1.91
CD44-225ENST00000527326 DNAH7Q8WXX0 4024 aa3.1□□□□□ -1.91
CD44-225ENST00000527326 FRAS1Q86XX4 4008 aa3.1□□□□□ -1.91
CD44-225ENST00000527326 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
CD44-225ENST00000527326 COL7A1Q02388 2944 aa3.08□□□□□ -1.92
CD44-225ENST00000527326 KIAA1109Q2LD37 5005 aa3.08□□□□□ -1.92
CD44-225ENST00000527326 PLECQ15149 4684 aaKnown RBP3.08□□□□□ -1.92
CD44-225ENST00000527326 SPACA4Q8TDM5 124 aa3.07□□□□□ -1.92
CD44-225ENST00000527326 STARD9Q9P2P6 4700 aa3.07□□□□□ -1.92
CD44-225ENST00000527326 HUWE1Q7Z6Z7 4374 aaKnown RBP3.06□□□□□ -1.92
CD44-225ENST00000527326 PLAC4Q8WY50 150 aa3.05□□□□□ -1.92
CD44-225ENST00000527326 DNAH10Q8IVF4 4471 aa3.04□□□□□ -1.92
CD44-225ENST00000527326 S4R3F8 94 aa3.04□□□□□ -1.92
CD44-225ENST00000527326 FLG2Q5D862 2391 aaPredicted RBP3.03□□□□□ -1.92
CD44-225ENST00000527326 HERC1Q15751 4861 aa3.02□□□□□ -1.93
CD44-225ENST00000527326 APLNQ9ULZ1 77 aa3.02□□□□□ -1.93
CD44-225ENST00000527326 A0A0D9SG42 100 aa3.01□□□□□ -1.93
CD44-225ENST00000527326 STAB2Q8WWQ8 2551 aa2.99□□□□□ -1.93
CD44-225ENST00000527326 KRTAP13-4Q3LI77 160 aa2.98□□□□□ -1.93
CD44-225ENST00000527326 PRO2289Q9P1D8 64 aa2.98□□□□□ -1.93
CD44-225ENST00000527326 UBE2DNLQ8IWF7 75 aa2.97□□□□□ -1.93
CD44-225ENST00000527326 DYNC1H1Q14204 4646 aaKnown RBP2.97□□□□□ -1.93
CD44-225ENST00000527326 Q6ZRN7 208 aaPredicted RBP2.95□□□□□ -1.94
CD44-225ENST00000527326 KRTAP12-2P59991 146 aa2.94□□□□□ -1.94
CD44-225ENST00000527326 KRTAP12-1P59990 96 aa2.93□□□□□ -1.94
CD44-225ENST00000527326 KMT2AQ03164 3969 aa2.93□□□□□ -1.94
CD44-225ENST00000527326 KRTAP13-2Q52LG2 175 aa2.92□□□□□ -1.94
CD44-225ENST00000527326 VPS13DQ5THJ4 4388 aa2.91□□□□□ -1.94
CD44-225ENST00000527326 DNAH11Q96DT5 4516 aa2.91□□□□□ -1.94
CD44-225ENST00000527326 KRTAP10-5P60370 271 aa2.91□□□□□ -1.94
CD44-225ENST00000527326 RPS29P62273 56 aaKnown RBP2.91□□□□□ -1.94
CD44-225ENST00000527326 PKHD1P08F94 4074 aa2.9□□□□□ -1.95
CD44-225ENST00000527326 DNAH2Q9P225 4427 aa2.89□□□□□ -1.95
CD44-225ENST00000527326 FAT2Q9NYQ8 4349 aa2.89□□□□□ -1.95
CD44-225ENST00000527326 HSPG2P98160 4391 aa2.89□□□□□ -1.95
CD44-225ENST00000527326 PP632Q6XCG6 107 aa2.89□□□□□ -1.95
CD44-225ENST00000527326 INE1O15225 51 aa2.88□□□□□ -1.95
CD44-225ENST00000527326 M0QZ58 72 aa2.87□□□□□ -1.95
CD44-225ENST00000527326 DNAH17Q9UFH2 4485 aa2.87□□□□□ -1.95
CD44-225ENST00000527326 DNAH6Q9C0G6 4158 aa2.85□□□□□ -1.95
CD44-225ENST00000527326 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
CD44-225ENST00000527326 SRRM2Q9UQ35 2752 aaKnown RBP2.84□□□□□ -1.95
CD44-225ENST00000527326 MYCBP2O75592 4640 aa2.83□□□□□ -1.96
CD44-225ENST00000527326 PKD1P98161 4303 aa2.83□□□□□ -1.96
CD44-225ENST00000527326 APOBP04114 4563 aaKnown RBP2.82□□□□□ -1.96
CD44-225ENST00000527326 R4GN34 69 aa2.82□□□□□ -1.96
CD44-225ENST00000527326 HMCN2Q8NDA2 5059 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 LRP1BQ9NZR2 4599 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 A0A1B0GVY2 172 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 KRTAP9-6A8MVA2 160 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 KRTAP1-4P0C5Y4 121 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 KRTAP10-12P60413 245 aa2.8□□□□□ -1.96
CD44-225ENST00000527326 RNF213Q63HN8 5207 aa2.79□□□□□ -1.96
CD44-225ENST00000527326 SPRR5A0A1B0GTR4 108 aa2.79□□□□□ -1.96
CD44-225ENST00000527326 KRTAP10-8P60410 259 aa2.77□□□□□ -1.97
CD44-225ENST00000527326 LCE1FQ5T754 118 aa2.77□□□□□ -1.97
CD44-225ENST00000527326 DNAH5Q8TE73 4624 aa2.77□□□□□ -1.97
CD44-225ENST00000527326 C9orf92A6NGG3 77 aa2.76□□□□□ -1.97
CD44-225ENST00000527326 DMBT1Q9UGM3 2413 aaPredicted RBP2.76□□□□□ -1.97
CD44-225ENST00000527326 FAT1Q14517 4588 aa2.75□□□□□ -1.97
CD44-225ENST00000527326 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.98
CD44-225ENST00000527326 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
CD44-225ENST00000527326 VPS13BQ7Z7G8 4022 aa2.7□□□□□ -1.98
CD44-225ENST00000527326 Q5VSD8 79 aa2.7□□□□□ -1.98
CD44-225ENST00000527326 DNAH8Q96JB1 4490 aa2.7□□□□□ -1.98
CD44-225ENST00000527326 KRTAP5-9P26371 169 aa2.66□□□□□ -1.98
CD44-225ENST00000527326 FAT4Q6V0I7 4981 aa2.65□□□□□ -1.98
CD44-225ENST00000527326 LCE3CQ5T5A8 94 aa2.64□□□□□ -1.99
CD44-225ENST00000527326 LRP1Q07954 4544 aaKnown RBP2.63□□□□□ -1.99
CD44-225ENST00000527326 FAT3Q8TDW7 4589 aa2.63□□□□□ -1.99
CD44-225ENST00000527326 MUC2Q02817 5179 aa2.62□□□□□ -1.99
CD44-225ENST00000527326 PKHD1L1Q86WI1 4243 aa2.62□□□□□ -1.99
CD44-225ENST00000527326 LRP2P98164 4655 aa2.62□□□□□ -1.99
CD44-225ENST00000527326 FSIP2Q5CZC0 6907 aa2.6□□□□□ -1.99
CD44-225ENST00000527326 SMR3BP02814 79 aaPredicted RBP2.6□□□□□ -1.99
CD44-225ENST00000527326 KRTAP10-1P60331 282 aa2.59□□□□□ -1.99
CD44-225ENST00000527326 TNP1P09430 55 aa2.57□□□□□ -2
CD44-225ENST00000527326 OBSCNQ5VST9 7968 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms