RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SPRR2AP35326 72 aa3.8□□□□□ -1.8
VCAN-208ENST00000512590 TGP01266 2768 aa3.75□□□□□ -1.81
VCAN-208ENST00000512590 KRTAP3-1Q9BYR8 98 aa3.74□□□□□ -1.81
VCAN-208ENST00000512590 ANK3Q12955 4377 aaKnown RBP3.73□□□□□ -1.81
VCAN-208ENST00000512590 SPRR2DP22532 72 aa3.7□□□□□ -1.82
VCAN-208ENST00000512590 FBN3Q75N90 2809 aa3.69□□□□□ -1.82
VCAN-208ENST00000512590 SRRM2Q9UQ35 2752 aaKnown RBP3.69□□□□□ -1.82
VCAN-208ENST00000512590 COL7A1Q02388 2944 aa3.67□□□□□ -1.82
VCAN-208ENST00000512590 SPRR5A0A1B0GTR4 108 aa3.63□□□□□ -1.83
VCAN-208ENST00000512590 KRTAP23-1A1A580 65 aa3.6□□□□□ -1.83
VCAN-208ENST00000512590 LCE2BO14633 110 aa3.59□□□□□ -1.84
VCAN-208ENST00000512590 KRTAP10-4P60372 401 aaPredicted RBP3.58□□□□□ -1.84
VCAN-208ENST00000512590 KRTAP12-4P60329 112 aa3.57□□□□□ -1.84
VCAN-208ENST00000512590 MT1HP80294 61 aa3.53□□□□□ -1.84
VCAN-208ENST00000512590 ANK2Q01484 3957 aa3.52□□□□□ -1.85
VCAN-208ENST00000512590 LYSTQ99698 3801 aa3.52□□□□□ -1.85
VCAN-208ENST00000512590 MEGF8Q7Z7M0 2845 aa3.52□□□□□ -1.85
VCAN-208ENST00000512590 DNAH10Q8IVF4 4471 aa3.47□□□□□ -1.85
VCAN-208ENST00000512590 LCE2CQ5TA81 110 aa3.46□□□□□ -1.86
VCAN-208ENST00000512590 KRTAP19-5Q3LI72 72 aa3.43□□□□□ -1.86
VCAN-208ENST00000512590 HUWE1Q7Z6Z7 4374 aaKnown RBP3.42□□□□□ -1.86
VCAN-208ENST00000512590 MT2AP02795 61 aa3.41□□□□□ -1.86
VCAN-208ENST00000512590 LCE3BQ5TA77 95 aa3.4□□□□□ -1.87
VCAN-208ENST00000512590 LCE2AQ5TA79 106 aaPredicted RBP3.38□□□□□ -1.87
VCAN-208ENST00000512590 DNAH7Q8WXX0 4024 aa3.34□□□□□ -1.87
VCAN-208ENST00000512590 KMT2AQ03164 3969 aa3.33□□□□□ -1.88
VCAN-208ENST00000512590 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
VCAN-208ENST00000512590 DNAH9Q9NYC9 4486 aa3.31□□□□□ -1.88
VCAN-208ENST00000512590 ALMS1Q8TCU4 4167 aa3.31□□□□□ -1.88
VCAN-208ENST00000512590 FRAS1Q86XX4 4008 aa3.31□□□□□ -1.88
VCAN-208ENST00000512590 PLECQ15149 4684 aaKnown RBP3.31□□□□□ -1.88
VCAN-208ENST00000512590 PRKDCP78527 4128 aaKnown RBP3.3□□□□□ -1.88
VCAN-208ENST00000512590 CMYA5Q8N3K9 4069 aa3.29□□□□□ -1.88
VCAN-208ENST00000512590 MT1FP04733 61 aa3.28□□□□□ -1.88
VCAN-208ENST00000512590 KRTAP19-4Q3LI73 84 aa3.28□□□□□ -1.88
VCAN-208ENST00000512590 DNHD1Q96M86 4753 aa3.28□□□□□ -1.88
VCAN-208ENST00000512590 MT4P47944 62 aa3.27□□□□□ -1.89
VCAN-208ENST00000512590 STARD9Q9P2P6 4700 aa3.26□□□□□ -1.89
VCAN-208ENST00000512590 MT1GP13640 62 aa3.23□□□□□ -1.89
VCAN-208ENST00000512590 SPRR2GQ9BYE4 73 aa3.23□□□□□ -1.89
VCAN-208ENST00000512590 DNAH1Q9P2D7 4330 aa3.22□□□□□ -1.89
VCAN-208ENST00000512590 KRTAP4-1Q9BYQ7 146 aa3.22□□□□□ -1.89
VCAN-208ENST00000512590 DNAH11Q96DT5 4516 aa3.21□□□□□ -1.89
VCAN-208ENST00000512590 DNAH8Q96JB1 4490 aa3.2□□□□□ -1.9
VCAN-208ENST00000512590 DNAH6Q9C0G6 4158 aa3.2□□□□□ -1.9
VCAN-208ENST00000512590 DNAH5Q8TE73 4624 aa3.19□□□□□ -1.9
VCAN-208ENST00000512590 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
VCAN-208ENST00000512590 KRTAP19-1Q8IUB9 90 aa3.17□□□□□ -1.9
VCAN-208ENST00000512590 VPS13DQ5THJ4 4388 aa3.16□□□□□ -1.9
VCAN-208ENST00000512590 LCE1BQ5T7P3 118 aa3.16□□□□□ -1.9
VCAN-208ENST00000512590 KRTAP20-1Q3LI63 56 aa3.15□□□□□ -1.9
VCAN-208ENST00000512590 FAT1Q14517 4588 aa3.14□□□□□ -1.91
VCAN-208ENST00000512590 LCE3DQ9BYE3 92 aa3.13□□□□□ -1.91
VCAN-208ENST00000512590 DNAH17Q9UFH2 4485 aa3.13□□□□□ -1.91
VCAN-208ENST00000512590 HYDINQ4G0P3 5121 aa3.11□□□□□ -1.91
VCAN-208ENST00000512590 DNAH2Q9P225 4427 aa3.1□□□□□ -1.91
VCAN-208ENST00000512590 KRTAP9-6A0A140TA67 174 aa3.1□□□□□ -1.91
VCAN-208ENST00000512590 LRP1BQ9NZR2 4599 aa3.1□□□□□ -1.91
VCAN-208ENST00000512590 LCE1DQ5T752 114 aa3.09□□□□□ -1.91
VCAN-208ENST00000512590 MYCBP2O75592 4640 aa3.08□□□□□ -1.92
VCAN-208ENST00000512590 PKHD1P08F94 4074 aa3.08□□□□□ -1.92
VCAN-208ENST00000512590 DNAH3Q8TD57 4116 aa3.08□□□□□ -1.92
VCAN-208ENST00000512590 VPS13BQ7Z7G8 4022 aa3.08□□□□□ -1.92
VCAN-208ENST00000512590 LCE5AQ5TCM9 118 aa3.07□□□□□ -1.92
VCAN-208ENST00000512590 KRTAP9-2Q9BYQ4 174 aa3.06□□□□□ -1.92
VCAN-208ENST00000512590 FAT3Q8TDW7 4589 aa3.06□□□□□ -1.92
VCAN-208ENST00000512590 HECTD4Q9Y4D8 3996 aa3.06□□□□□ -1.92
VCAN-208ENST00000512590 DYNC1H1Q14204 4646 aaKnown RBP3.04□□□□□ -1.92
VCAN-208ENST00000512590 LRP1Q07954 4544 aaKnown RBP3.01□□□□□ -1.93
VCAN-208ENST00000512590 DYNC2H1Q8NCM8 4307 aaKnown RBP3□□□□□ -1.93
VCAN-208ENST00000512590 FAT2Q9NYQ8 4349 aa3□□□□□ -1.93
VCAN-208ENST00000512590 MT3P25713 68 aa3□□□□□ -1.93
VCAN-208ENST00000512590 SACSQ9NZJ4 4579 aa2.98□□□□□ -1.93
VCAN-208ENST00000512590 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
VCAN-208ENST00000512590 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
VCAN-208ENST00000512590 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
VCAN-208ENST00000512590 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
VCAN-208ENST00000512590 KRTAP17-1Q9BYP8 105 aa2.95□□□□□ -1.94
VCAN-208ENST00000512590 RYR1P21817 5038 aa2.94□□□□□ -1.94
VCAN-208ENST00000512590 KMT2CQ8NEZ4 4911 aaKnown RBP2.94□□□□□ -1.94
VCAN-208ENST00000512590 KRTAP19-3Q7Z4W3 81 aa2.94□□□□□ -1.94
VCAN-208ENST00000512590 KRTAP19-8Q3LI54 63 aa2.92□□□□□ -1.94
VCAN-208ENST00000512590 KIAA1109Q2LD37 5005 aa2.91□□□□□ -1.94
VCAN-208ENST00000512590 APOBP04114 4563 aaKnown RBP2.91□□□□□ -1.94
VCAN-208ENST00000512590 KRTAP9-7A8MTY7 169 aa2.9□□□□□ -1.95
VCAN-208ENST00000512590 KRTAP4-8A0A0G2JLE6 195 aa2.89□□□□□ -1.95
VCAN-208ENST00000512590 KRTAP4-8Q9BYQ9 185 aa2.89□□□□□ -1.95
VCAN-208ENST00000512590 KRTAP19-6Q3LI70 58 aa2.89□□□□□ -1.95
VCAN-208ENST00000512590 LPAP08519 4548 aa2.88□□□□□ -1.95
VCAN-208ENST00000512590 RYR3Q15413 4870 aa2.87□□□□□ -1.95
VCAN-208ENST00000512590 PKD1P98161 4303 aa2.85□□□□□ -1.95
VCAN-208ENST00000512590 MT1XP80297 61 aa2.85□□□□□ -1.95
VCAN-208ENST00000512590 RYR2Q92736 4967 aa2.84□□□□□ -1.95
VCAN-208ENST00000512590 KRTAP2-3P0C7H8 128 aa2.84□□□□□ -1.95
VCAN-208ENST00000512590 KRTAP2-4Q9BYR9 128 aa2.84□□□□□ -1.95
VCAN-208ENST00000512590 LRP2P98164 4655 aa2.83□□□□□ -1.96
VCAN-208ENST00000512590 HERC1Q15751 4861 aa2.82□□□□□ -1.96
VCAN-208ENST00000512590 HSPG2P98160 4391 aa2.8□□□□□ -1.96
VCAN-208ENST00000512590 MT1BP07438 61 aa2.78□□□□□ -1.96
VCAN-208ENST00000512590 EPPK1P58107 5090 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 223.9 ms