RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 DNAH5Q8TE73 4624 aa5.28□□□□□ -1.56
CPNE4-209ENST00000512055 LYSTQ99698 3801 aa5.27□□□□□ -1.57
CPNE4-209ENST00000512055 KRTAP15-1Q3LI76 137 aa5.27□□□□□ -1.57
CPNE4-209ENST00000512055 MT1HL1P0DM35 61 aa5.25□□□□□ -1.57
CPNE4-209ENST00000512055 KRTAP12-1P59990 96 aa5.24□□□□□ -1.57
CPNE4-209ENST00000512055 CMYA5Q8N3K9 4069 aa5.23□□□□□ -1.57
CPNE4-209ENST00000512055 KMT2AQ03164 3969 aa5.22□□□□□ -1.57
CPNE4-209ENST00000512055 DNAH17Q9UFH2 4485 aa5.22□□□□□ -1.57
CPNE4-209ENST00000512055 ALMS1Q8TCU4 4167 aa5.21□□□□□ -1.57
CPNE4-209ENST00000512055 DNAH3Q8TD57 4116 aa5.19□□□□□ -1.58
CPNE4-209ENST00000512055 KRTAP4-5Q9BYR2 181 aa5.17□□□□□ -1.58
CPNE4-209ENST00000512055 FAT1Q14517 4588 aa5.15□□□□□ -1.58
CPNE4-209ENST00000512055 DNAH2Q9P225 4427 aa5.15□□□□□ -1.59
CPNE4-209ENST00000512055 KRTAP10-6P60371 365 aaPredicted RBP5.14□□□□□ -1.59
CPNE4-209ENST00000512055 LRP1BQ9NZR2 4599 aa5.14□□□□□ -1.59
CPNE4-209ENST00000512055 DNAH8Q96JB1 4490 aa5.13□□□□□ -1.59
CPNE4-209ENST00000512055 DNAH7Q8WXX0 4024 aa5.12□□□□□ -1.59
CPNE4-209ENST00000512055 DYNC1H1Q14204 4646 aaKnown RBP5.11□□□□□ -1.59
CPNE4-209ENST00000512055 KRTAP3-3Q9BYR6 98 aa5.09□□□□□ -1.59
CPNE4-209ENST00000512055 DYNC2H1Q8NCM8 4307 aaKnown RBP5.06□□□□□ -1.6
CPNE4-209ENST00000512055 KRTAP3-2Q9BYR7 98 aa5.03□□□□□ -1.6
CPNE4-209ENST00000512055 FRAS1Q86XX4 4008 aa5.03□□□□□ -1.6
CPNE4-209ENST00000512055 CRCT1Q9UGL9 99 aa5.01□□□□□ -1.61
CPNE4-209ENST00000512055 VPS13BQ7Z7G8 4022 aa5□□□□□ -1.61
CPNE4-209ENST00000512055 DNAH6Q9C0G6 4158 aa5□□□□□ -1.61
CPNE4-209ENST00000512055 KRTAP23-1A1A580 65 aa4.99□□□□□ -1.61
CPNE4-209ENST00000512055 HECTD4Q9Y4D8 3996 aa4.96□□□□□ -1.61
CPNE4-209ENST00000512055 FAT2Q9NYQ8 4349 aa4.95□□□□□ -1.62
CPNE4-209ENST00000512055 SACSQ9NZJ4 4579 aa4.92□□□□□ -1.62
CPNE4-209ENST00000512055 RYR1P21817 5038 aa4.92□□□□□ -1.62
CPNE4-209ENST00000512055 HYDINQ4G0P3 5121 aa4.9□□□□□ -1.62
CPNE4-209ENST00000512055 MYCBP2O75592 4640 aa4.89□□□□□ -1.63
CPNE4-209ENST00000512055 KIAA1109Q2LD37 5005 aa4.88□□□□□ -1.63
CPNE4-209ENST00000512055 APOBP04114 4563 aaKnown RBP4.84□□□□□ -1.63
CPNE4-209ENST00000512055 LRP1Q07954 4544 aaKnown RBP4.84□□□□□ -1.63
CPNE4-209ENST00000512055 PKHD1P08F94 4074 aa4.82□□□□□ -1.64
CPNE4-209ENST00000512055 RYR3Q15413 4870 aa4.82□□□□□ -1.64
CPNE4-209ENST00000512055 LORP23490 312 aaPredicted RBP4.8□□□□□ -1.64
CPNE4-209ENST00000512055 KRTAP17-1Q9BYP8 105 aa4.8□□□□□ -1.64
CPNE4-209ENST00000512055 KRTAP4-1Q9BYQ7 146 aa4.77□□□□□ -1.65
CPNE4-209ENST00000512055 KMT2CQ8NEZ4 4911 aaKnown RBP4.77□□□□□ -1.65
CPNE4-209ENST00000512055 KRTAP10-5P60370 271 aa4.77□□□□□ -1.65
CPNE4-209ENST00000512055 FAT3Q8TDW7 4589 aa4.76□□□□□ -1.65
CPNE4-209ENST00000512055 KRTAP10-12P60413 245 aa4.73□□□□□ -1.65
CPNE4-209ENST00000512055 RYR2Q92736 4967 aa4.73□□□□□ -1.65
CPNE4-209ENST00000512055 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
CPNE4-209ENST00000512055 PKD1P98161 4303 aa4.67□□□□□ -1.66
CPNE4-209ENST00000512055 HSPG2P98160 4391 aa4.61□□□□□ -1.67
CPNE4-209ENST00000512055 LCE3AQ5TA76 89 aa4.59□□□□□ -1.68
CPNE4-209ENST00000512055 LRP2P98164 4655 aa4.58□□□□□ -1.68
CPNE4-209ENST00000512055 HERC2O95714 4834 aa4.53□□□□□ -1.68
CPNE4-209ENST00000512055 MT1HP80294 61 aa4.48□□□□□ -1.69
CPNE4-209ENST00000512055 EPPK1P58107 5090 aaKnown RBP4.47□□□□□ -1.69
CPNE4-209ENST00000512055 LPAP08519 4548 aa4.46□□□□□ -1.7
CPNE4-209ENST00000512055 KRTAP8-1Q8IUC2 63 aa4.43□□□□□ -1.7
CPNE4-209ENST00000512055 MT2AP02795 61 aa4.41□□□□□ -1.7
CPNE4-209ENST00000512055 PKHD1L1Q86WI1 4243 aa4.4□□□□□ -1.71
CPNE4-209ENST00000512055 TNXBP22105 4242 aa4.39□□□□□ -1.71
CPNE4-209ENST00000512055 MT1FP04733 61 aa4.38□□□□□ -1.71
CPNE4-209ENST00000512055 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
CPNE4-209ENST00000512055 BIRC6Q9NR09 4857 aa4.33□□□□□ -1.72
CPNE4-209ENST00000512055 ABCA13Q86UQ4 5058 aa4.29□□□□□ -1.72
CPNE4-209ENST00000512055 KRTAP10-7P60409 375 aaPredicted RBP4.25□□□□□ -1.73
CPNE4-209ENST00000512055 KRTAP19-1Q8IUB9 90 aa4.25□□□□□ -1.73
CPNE4-209ENST00000512055 HERC1Q15751 4861 aa4.22□□□□□ -1.73
CPNE4-209ENST00000512055 LCE2CQ5TA81 110 aa4.21□□□□□ -1.74
CPNE4-209ENST00000512055 PCLOQ9Y6V0 5065 aa4.2□□□□□ -1.74
CPNE4-209ENST00000512055 MUC2Q02817 5179 aa4.19□□□□□ -1.74
CPNE4-209ENST00000512055 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
CPNE4-209ENST00000512055 KRTAP19-2Q3LHN2 52 aa4.16□□□□□ -1.74
CPNE4-209ENST00000512055 KRTAP9-8Q9BYQ0 159 aa4.13□□□□□ -1.75
CPNE4-209ENST00000512055 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
CPNE4-209ENST00000512055 MUC17Q685J3 4493 aa4.1□□□□□ -1.75
CPNE4-209ENST00000512055 RNF213Q63HN8 5207 aa4.09□□□□□ -1.75
CPNE4-209ENST00000512055 FLGP20930 4061 aaPredicted RBP4.07□□□□□ -1.76
CPNE4-209ENST00000512055 MT1BP07438 61 aa4.06□□□□□ -1.76
CPNE4-209ENST00000512055 KRTAP19-5Q3LI72 72 aa4.05□□□□□ -1.76
CPNE4-209ENST00000512055 MT1XP80297 61 aa4.05□□□□□ -1.76
CPNE4-209ENST00000512055 KRTAP12-4P60329 112 aa4.03□□□□□ -1.76
CPNE4-209ENST00000512055 FAT4Q6V0I7 4981 aa4.02□□□□□ -1.77
CPNE4-209ENST00000512055 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
CPNE4-209ENST00000512055 SPRR2EP22531 72 aa3.99□□□□□ -1.77
CPNE4-209ENST00000512055 SPRR2BP35325 72 aa3.99□□□□□ -1.77
CPNE4-209ENST00000512055 SPRR2AP35326 72 aa3.99□□□□□ -1.77
CPNE4-209ENST00000512055 KRTAP9-3Q9BYQ3 159 aa3.99□□□□□ -1.77
CPNE4-209ENST00000512055 UBR4Q5T4S7 5183 aa3.99□□□□□ -1.77
CPNE4-209ENST00000512055 HMCN2Q8NDA2 5059 aa3.91□□□□□ -1.78
CPNE4-209ENST00000512055 LCE3BQ5TA77 95 aa3.9□□□□□ -1.78
CPNE4-209ENST00000512055 KRTAP4-8A0A0G2JLE6 195 aa3.9□□□□□ -1.78
CPNE4-209ENST00000512055 KRTAP4-8Q9BYQ9 185 aa3.9□□□□□ -1.78
CPNE4-209ENST00000512055 SPRR5A0A1B0GTR4 108 aa3.88□□□□□ -1.79
CPNE4-209ENST00000512055 SPRR2DP22532 72 aa3.88□□□□□ -1.79
CPNE4-209ENST00000512055 LCE2BO14633 110 aa3.87□□□□□ -1.79
CPNE4-209ENST00000512055 FSIP2Q5CZC0 6907 aa3.85□□□□□ -1.79
CPNE4-209ENST00000512055 LCE3DQ9BYE3 92 aa3.74□□□□□ -1.81
CPNE4-209ENST00000512055 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
CPNE4-209ENST00000512055 KRTAP19-4Q3LI73 84 aa3.68□□□□□ -1.82
CPNE4-209ENST00000512055 KRTAP4-7Q9BYR0 210 aa3.68□□□□□ -1.82
CPNE4-209ENST00000512055 LCE2AQ5TA79 106 aaPredicted RBP3.67□□□□□ -1.82
CPNE4-209ENST00000512055 MT1GP13640 62 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms