RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 TPRXLQ17RH7 258 aa9.07□□□□□ -0.96
NUP54-205ENST00000507257 DNHD1Q96M86 4753 aa9.05□□□□□ -0.96
NUP54-205ENST00000507257 S4R3F8 94 aa9.03□□□□□ -0.96
NUP54-205ENST00000507257 A0A0D9SG42 100 aa9.01□□□□□ -0.97
NUP54-205ENST00000507257 A0A1B0GVY2 172 aa9.01□□□□□ -0.97
NUP54-205ENST00000507257 FAT1Q14517 4588 aa8.99□□□□□ -0.97
NUP54-205ENST00000507257 SPINT4Q6UDR6 99 aa8.97□□□□□ -0.97
NUP54-205ENST00000507257 FAT3Q8TDW7 4589 aa8.97□□□□□ -0.97
NUP54-205ENST00000507257 LCE2DQ5TA82 110 aaPredicted RBP8.95□□□□□ -0.98
NUP54-205ENST00000507257 TNXBP22105 4242 aa8.93□□□□□ -0.98
NUP54-205ENST00000507257 LRP1Q07954 4544 aaKnown RBP8.91□□□□□ -0.98
NUP54-205ENST00000507257 KRTAP10-8P60410 259 aa8.9□□□□□ -0.98
NUP54-205ENST00000507257 KRTAP15-1Q3LI76 137 aa8.9□□□□□ -0.98
NUP54-205ENST00000507257 DMBT1Q9UGM3 2413 aaPredicted RBP8.89□□□□□ -0.99
NUP54-205ENST00000507257 KRTAP12-2P59991 146 aa8.87□□□□□ -0.99
NUP54-205ENST00000507257 XP32Q5T750 250 aa8.87□□□□□ -0.99
NUP54-205ENST00000507257 C10orf95Q9H7T3 257 aa8.87□□□□□ -0.99
NUP54-205ENST00000507257 KRTAP12-1P59990 96 aa8.84□□□□□ -1
NUP54-205ENST00000507257 HSPG2P98160 4391 aa8.81□□□□□ -1
NUP54-205ENST00000507257 M0QZ58 72 aa8.79□□□□□ -1
NUP54-205ENST00000507257 NDUFAF8A1L188 74 aa8.7□□□□□ -1.02
NUP54-205ENST00000507257 KRTAP21-3Q3LHN1 58 aa8.57□□□□□ -1.04
NUP54-205ENST00000507257 Q5VSD8 79 aa8.56□□□□□ -1.04
NUP54-205ENST00000507257 RYR2Q92736 4967 aa8.52□□□□□ -1.05
NUP54-205ENST00000507257 MYCBP2O75592 4640 aa8.51□□□□□ -1.05
NUP54-205ENST00000507257 MT1HL1P0DM35 61 aa8.44□□□□□ -1.06
NUP54-205ENST00000507257 R4GN34 69 aa8.37□□□□□ -1.07
NUP54-205ENST00000507257 KMT2CQ8NEZ4 4911 aaKnown RBP8.33□□□□□ -1.08
NUP54-205ENST00000507257 PLAC4Q8WY50 150 aa8.32□□□□□ -1.08
NUP54-205ENST00000507257 LPAP08519 4548 aa8.32□□□□□ -1.08
NUP54-205ENST00000507257 RYR1P21817 5038 aa8.3□□□□□ -1.08
NUP54-205ENST00000507257 LRP2P98164 4655 aa8.27□□□□□ -1.09
NUP54-205ENST00000507257 KRTAP17-1Q9BYP8 105 aa8.24□□□□□ -1.09
NUP54-205ENST00000507257 PP632Q6XCG6 107 aa8.23□□□□□ -1.09
NUP54-205ENST00000507257 LORP23490 312 aaPredicted RBP8.13□□□□□ -1.11
NUP54-205ENST00000507257 SEC61BP60468 96 aaKnown RBP8.1□□□□□ -1.11
NUP54-205ENST00000507257 MUC17Q685J3 4493 aa8.05□□□□□ -1.12
NUP54-205ENST00000507257 LUZP6Q538Z0 58 aa8.03□□□□□ -1.12
NUP54-205ENST00000507257 RYR3Q15413 4870 aa8□□□□□ -1.13
NUP54-205ENST00000507257 CAMK2N1Q7Z7J9 78 aa7.97□□□□□ -1.13
NUP54-205ENST00000507257 KIAA1109Q2LD37 5005 aa7.95□□□□□ -1.14
NUP54-205ENST00000507257 KRTAP23-1A1A580 65 aa7.95□□□□□ -1.14
NUP54-205ENST00000507257 KRTAP19-2Q3LHN2 52 aa7.93□□□□□ -1.14
NUP54-205ENST00000507257 KRTAP4-1Q9BYQ7 146 aa7.9□□□□□ -1.14
NUP54-205ENST00000507257 A0A0A0MQY5 61 aa7.89□□□□□ -1.15
NUP54-205ENST00000507257 SPRR5A0A1B0GTR4 108 aa7.82□□□□□ -1.16
NUP54-205ENST00000507257 TNP1P09430 55 aa7.8□□□□□ -1.16
NUP54-205ENST00000507257 ABCA13Q86UQ4 5058 aa7.77□□□□□ -1.16
NUP54-205ENST00000507257 FLGP20930 4061 aaPredicted RBP7.67□□□□□ -1.18
NUP54-205ENST00000507257 KRTAP4-5Q9BYR2 181 aa7.67□□□□□ -1.18
NUP54-205ENST00000507257 HERC1Q15751 4861 aa7.66□□□□□ -1.18
NUP54-205ENST00000507257 EPPK1P58107 5090 aaKnown RBP7.55□□□□□ -1.2
NUP54-205ENST00000507257 J3QL48 77 aa7.52□□□□□ -1.2
NUP54-205ENST00000507257 SPRR2GQ9BYE4 73 aa7.46□□□□□ -1.22
NUP54-205ENST00000507257 BIRC6Q9NR09 4857 aa7.41□□□□□ -1.22
NUP54-205ENST00000507257 KRTAP19-1Q8IUB9 90 aa7.33□□□□□ -1.24
NUP54-205ENST00000507257 HERC2O95714 4834 aa7.29□□□□□ -1.24
NUP54-205ENST00000507257 LCE3AQ5TA76 89 aa7.28□□□□□ -1.24
NUP54-205ENST00000507257 LCE2CQ5TA81 110 aa7.26□□□□□ -1.25
NUP54-205ENST00000507257 LOC100996750A0A140TA64 210 aa7.25□□□□□ -1.25
NUP54-205ENST00000507257 KRTAP4-6Q9BYQ5 205 aa7.25□□□□□ -1.25
NUP54-205ENST00000507257 PRO2289Q9P1D8 64 aa7.23□□□□□ -1.25
NUP54-205ENST00000507257 KRTAP8-1Q8IUC2 63 aa7.22□□□□□ -1.25
NUP54-205ENST00000507257 PCLOQ9Y6V0 5065 aa7.19□□□□□ -1.26
NUP54-205ENST00000507257 MUC2Q02817 5179 aa7.19□□□□□ -1.26
NUP54-205ENST00000507257 INE1O15225 51 aa7.18□□□□□ -1.26
NUP54-205ENST00000507257 KRTAP19-8Q3LI54 63 aa7.08□□□□□ -1.28
NUP54-205ENST00000507257 LCE2BO14633 110 aa7.05□□□□□ -1.28
NUP54-205ENST00000507257 MT1HP80294 61 aa7.01□□□□□ -1.29
NUP54-205ENST00000507257 MT2AP02795 61 aa7.01□□□□□ -1.29
NUP54-205ENST00000507257 MT1FP04733 61 aa7□□□□□ -1.29
NUP54-205ENST00000507257 M0R2T5 61 aa6.99□□□□□ -1.29
NUP54-205ENST00000507257 HMCN2Q8NDA2 5059 aa6.97□□□□□ -1.29
NUP54-205ENST00000507257 KRTAP10-10P60014 251 aa6.96□□□□□ -1.3
NUP54-205ENST00000507257 KRTAP12-3P60328 96 aa6.95□□□□□ -1.3
NUP54-205ENST00000507257 KRTAP10-5P60370 271 aa6.95□□□□□ -1.3
NUP54-205ENST00000507257 KRTAP9-8Q9BYQ0 159 aa6.94□□□□□ -1.3
NUP54-205ENST00000507257 MT1XP80297 61 aa6.93□□□□□ -1.3
NUP54-205ENST00000507257 KRTAP10-12P60413 245 aa6.91□□□□□ -1.3
NUP54-205ENST00000507257 MT1BP07438 61 aa6.9□□□□□ -1.3
NUP54-205ENST00000507257 FAT4Q6V0I7 4981 aa6.89□□□□□ -1.31
NUP54-205ENST00000507257 LCE2AQ5TA79 106 aaPredicted RBP6.76□□□□□ -1.33
NUP54-205ENST00000507257 UBR4Q5T4S7 5183 aa6.75□□□□□ -1.33
NUP54-205ENST00000507257 KRTAP10-7P60409 375 aaPredicted RBP6.7□□□□□ -1.34
NUP54-205ENST00000507257 KRTAP9-3Q9BYQ3 159 aa6.63□□□□□ -1.35
NUP54-205ENST00000507257 RNF213Q63HN8 5207 aa6.62□□□□□ -1.35
NUP54-205ENST00000507257 LCE3CQ5T5A8 94 aa6.58□□□□□ -1.36
NUP54-205ENST00000507257 KRTAP19-5Q3LI72 72 aa6.5□□□□□ -1.37
NUP54-205ENST00000507257 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.38
NUP54-205ENST00000507257 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
NUP54-205ENST00000507257 KRTAP2-3P0C7H8 128 aa6.35□□□□□ -1.39
NUP54-205ENST00000507257 KRTAP2-4Q9BYR9 128 aa6.35□□□□□ -1.39
NUP54-205ENST00000507257 KRTAP2-1Q9BYU5 128 aa6.35□□□□□ -1.39
NUP54-205ENST00000507257 KRTAP9-6A8MVA2 160 aa6.32□□□□□ -1.4
NUP54-205ENST00000507257 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.31□□□□□ -1.4
NUP54-205ENST00000507257 KRTAP9-2Q9BYQ4 174 aa6.31□□□□□ -1.4
NUP54-205ENST00000507257 KRTAP9-6A0A140TA67 174 aa6.28□□□□□ -1.4
NUP54-205ENST00000507257 KRTAP19-7Q3SYF9 63 aa6.18□□□□□ -1.42
NUP54-205ENST00000507257 LCE3BQ5TA77 95 aa6.16□□□□□ -1.42
NUP54-205ENST00000507257 KRTAP4-8A0A0G2JLE6 195 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms